EsuBft1055_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1055_11a-0001
Unique Name	EsuBft1055_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_61	contig	Scaffold_61:90453..91660 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1055_11
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	120
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1055_11a	EsuBft1055_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_61 90453..91660 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1055_11a-0001-exon	EsuBft1055_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_61 90453..91660 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1055_11a-0001-exon	agat-three_prime_utr-532	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_61 90453..91504 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1055_11a-0001-cds	EsuBft1055_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_61 91505..91660 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1055_11a-0001	EsuBft1055_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_61 91505..91660 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_61:90453..91660-
coding sequence from alignment at Scaffold_61:90453..91660-

spliced messenger RNA

>EsuBft1055_11a-0001 ID=EsuBft1055_11a-0001|Name=EsuBft1055_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1208bp|location=Sequence derived from alignment at Scaffold_61:90453..91660- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCGGGGCAGGGTCAGACGATGACTTCCACGAGTCCTCTGTGGCG
GCCTGTGGGCGCAGGTAGACCTCGCTGGCCTGACCAGCATGACGCGGCTC
TGAGACGGGGGGGGAAGGGAGGGAACGTGTGCTGTTTCCTGTATACAGGC
TGCTAACTGCAACGACAGTCAAATGCTTTGGAGACTTGTGTTCTGTTGTT
CCATTTCCTTTCACCGATCGATTGTGGTGATTTTGTTTCAGTTTCGCTCG
ACCGTCTGTTGCGAAAGATAAAAGAAAAAAAACAACGCCGGAAACGGTTG
TGTATCGGCGCTCGTGGGTTCTACTTTTGTGGTGCCGTGATGTCCTTGGT
CCCCCCCCCCCTCGTATTCGCGTATTCGCGTACTCGCGTAGGTGATTTCT
TCAGGGGGTTGGTGAGGTGTTGCTTCCTCGTTTGTTTCTTGCCCCGTCGT
GCCACAAGCGTGGATATTGTGGCGTGTGTGCTTCCATTTCTGTGCGTCTT
CCAGTTGAAATGTTTTGTTAGTACATCCCTTTTGTCGTGCTGTCGTACGC
CCATCATGAGTGTGTTGGCTGCCCGAGGTTTACATATATTCTATCCCAGC
TTGTTGGTGAAGTCGTCGTTTCCTCGGACGAGGCTGTACGTGTGTAGGGT
GGTGGTTCGTGACTTCCAACAAGTCACTGGGCGTCACTTCTCGAGTTTTG
TTTATTTTTTCAATGACATCAGTCTTTTTCAGCACTCCGAGTAAACACTT
ACGGTAGTTTTGTAGTGTTTTCGCACTTGGCTGTGATCCGCACTTCAACA
AGTCATTGGGCGTCACTTGTCGTTGTTGTTGATTTCTTCAATTACACCAG
TCCTTTCCAAAACACTTACAGGTGTTTTTTTTAGAGCTTACTTGCTTGGC
TGTGATTCGCGTGTCGTTTTATAGGTCGTTCGATCTGGGCCTCTGCTTGC
GCCATCCCCGAAGGAGTGGTAAATTGTTTTTTTTTGGGATGATGCTTGCC
GCGTGCCGTGTTGGTGTGTGTGTGTCTATTCTGTCCAGTCTGGACAACGT
GATGTGTGGGTGGCAATACAAGTGTTCAGTACCGTTGTGTGTATCCTTGG
AGCCAAAATCGTTTACGCAACACTCTTGAGCCAAACGGAACAGAATGTAG
ACGATTGGGGGCCCTTGGCGCTTGTGTCAGTGTGGAAGGATGTATCCATT
CGAGGTAG

protein sequence of EsuBft1055_11a-0001

>EsuBft1055_11 ID=EsuBft1055_11|Name=EsuBft1055_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=51bp
MVAGQGQTMTSTSPLWRPVGAGRPRWPDQHDAALRRGGKGGNVCCFLYTG
C

mRNA from alignment at Scaffold_61:90453..91660-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1055_11a-0001 ID=EsuBft1055_11a-0001|Name=EsuBft1055_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1208bp|location=Sequence derived from alignment at Scaffold_61:90453..91660- (Ectocarpus subulatus male Bft15b)
ATGGTGGCGGGGCAGGGTCAGACGATGACTTCCACGAGTCCTCTGTGGCG
GCCTGTGGGCGCAGGTAGACCTCGCTGGCCTGACCAGCATGACGCGGCTC
TGAGACGGGGGGGGAAGGGAGGGAACGTGTGCTGTTTCCTGTATACAGGC
TGCTAACTGCAACGACAGTCAAATGCTTTGGAGACTTGTGTTCTGTTGTT
CCATTTCCTTTCACCGATCGATTGTGGTGATTTTGTTTCAGTTTCGCTCG
ACCGTCTGTTGCGAAAGATAAAAGAAAAAAAACAACGCCGGAAACGGTTG
TGTATCGGCGCTCGTGGGTTCTACTTTTGTGGTGCCGTGATGTCCTTGGT
CCCCCCCCCCCTCGTATTCGCGTATTCGCGTACTCGCGTAGGTGATTTCT
TCAGGGGGTTGGTGAGGTGTTGCTTCCTCGTTTGTTTCTTGCCCCGTCGT
GCCACAAGCGTGGATATTGTGGCGTGTGTGCTTCCATTTCTGTGCGTCTT
CCAGTTGAAATGTTTTGTTAGTACATCCCTTTTGTCGTGCTGTCGTACGC
CCATCATGAGTGTGTTGGCTGCCCGAGGTTTACATATATTCTATCCCAGC
TTGTTGGTGAAGTCGTCGTTTCCTCGGACGAGGCTGTACGTGTGTAGGGT
GGTGGTTCGTGACTTCCAACAAGTCACTGGGCGTCACTTCTCGAGTTTTG
TTTATTTTTTCAATGACATCAGTCTTTTTCAGCACTCCGAGTAAACACTT
ACGGTAGTTTTGTAGTGTTTTCGCACTTGGCTGTGATCCGCACTTCAACA
AGTCATTGGGCGTCACTTGTCGTTGTTGTTGATTTCTTCAATTACACCAG
TCCTTTCCAAAACACTTACAGGTGTTTTTTTTAGAGCTTACTTGCTTGGC
TGTGATTCGCGTGTCGTTTTATAGGTCGTTCGATCTGGGCCTCTGCTTGC
GCCATCCCCGAAGGAGTGGTAAATTGTTTTTTTTTGGGATGATGCTTGCC
GCGTGCCGTGTTGGTGTGTGTGTGTCTATTCTGTCCAGTCTGGACAACGT
GATGTGTGGGTGGCAATACAAGTGTTCAGTACCGTTGTGTGTATCCTTGG
AGCCAAAATCGTTTACGCAACACTCTTGAGCCAAACGGAACAGAATGTAG
ACGATTGGGGGCCCTTGGCGCTTGTGTCAGTGTGGAAGGATGTATCCATT
CGAGGTAG

Coding sequence (CDS) from alignment at Scaffold_61:90453..91660-

>EsuBft1055_11a-0001 ID=EsuBft1055_11a-0001|Name=EsuBft1055_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=156bp|location=Sequence derived from alignment at Scaffold_61:90453..91660- (Ectocarpus subulatus male Bft15b)
ATGGTGGCGGGGCAGGGTCAGACGATGACTTCCACGAGTCCTCTGTGGCG
GCCTGTGGGCGCAGGTAGACCTCGCTGGCCTGACCAGCATGACGCGGCTC
TGAGACGGGGGGGGAAGGGAGGGAACGTGTGCTGTTTCCTGTATACAGGC
TGCTAA