EsuBft1054_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1054_4a-0001
Unique NameEsuBft1054_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_128contigScaffold_128:24152..26181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FSX1
ProteomeIdEsuBft1054_4
Protein domainsIPR011990
Protein domainsIPR019734
Protein domainsIPR029044
Protein domainsSSF48452
Protein domainsIPR013026
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length106
Hectar predicted targeting categoryother localisation
Evalue1.21e-226
EggNOG OGs2CN00@1|root,2QT19@2759|Eukaryota
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-27_006680.1
Date last modified2016-06-14
Date creation2016-06-14
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1054_4aEsuBft1054_4aEctocarpus subulatus male Bft15bgeneScaffold_128 24152..26181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1054_4a-0001EsuBft1054_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_128 24189..26181 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1054_4a-0001-exonEsuBft1054_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_128 24152..24429 -
EsuBft1054_4a-0001-exonagat-exon-107067Ectocarpus subulatus male Bft15bexonScaffold_128 24780..25372 -
EsuBft1054_4a-0001-exonagat-exon-107068Ectocarpus subulatus male Bft15bexonScaffold_128 25559..25748 -
EsuBft1054_4a-0001-exonagat-exon-107066Ectocarpus subulatus male Bft15bexonScaffold_128 26177..26181 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1054_4a-0001-exonagat-three_prime_utr-528Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_128 24152..24188 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1054_4a-0001-cdsEsuBft1054_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_128 24189..24429 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1054_4a-0001 ID=EsuBft1054_4a-0001|Name=EsuBft1054_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1066bp|location=Sequence derived from alignment at Scaffold_128:24152..26181- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCCGTTCGATCCCAAGGCGTACTACAATCATGGCGTCTGTATTGA
TGCCTTGGGAGAAAAGGAAGCGGCGCTCTCTAGCTTCGAGAAAGCTTTCG
ATCTGCAACCGAGCTTGGCAGATGCTGGGGCGAACGCGGCTGGCCTGCTC
ATTCAATCTGGCGAAGCCGAGCGCGCCTGCACCCTCTGTTTGCTCGCACT
TGACGGGAACCCCGACTGCGCAGCCGCGTTGTACAATCTGAACACCGCTC
TGCGAATGGCCGGGCGACCCAGGGAAGCGATCGCCTTGTCGTGGAGATGG
ATCCGGGAACGGCTTCCCGCGGGCACCCCGAGTTACGCCTCGGCAGTTTC
CTTGGAAAACCTGGCCGCTGCATCCAGTAGCAACAGCGAAGACGGAGGTA
ATCCTCGCCCTTCTGCTGTTGCAACGACGAGAGCGGAGCTGCCACGTTTT
GGTGGCTCGATAGGAGGCTTCGAATCGGAGGTCGGAAAGAGAATGGTCTG
CGTTGAAGATTGCTCTGCTGAAGGTTCGGCAGCCAAAGAACAAGGCGCGG
ACGGAGCGAGTCGTCTCACAGTTGTGTGCATTCGGTGGGGGCCCAAGTAC
GGGCCGGAATACGTGGAGAGGCTGGCGGCGGGTGTACGACGAAACTTGCT
GAGGGACCACCGCTTCGTGTGCTTCACTGATGATGTGGAAGCGCTTAGCG
AGATGCCTGGGGTGGTGGCAAGGCCGCTCGGTTCGGCTAGGCGTGGGGAG
TGGCGAGGGTGGTGGCACAAGGCGTTCCTGTTCTCGAGGGAGACGACATT
GGCTGGACGCGTTATGTACATCGACCTCGACACGGTCATCGCCGACTCTT
TGGATGACATCGCCGGCTATGCTGGTCCTTTTGCCGTCCTTTCTGCGGAG
GGGATGGCAAACGAGCGCCGTCCAGGGGGATTGAACAGCTCGGTCATGTC
TTGGGATGCTGGTAGCGAAGTAAATACCGTCCAGCCTGTGTACGATCTGC
TGAAAGAGGCATATGCGGTGGTGAGCTAAGTCAACCTCGTTGTCGTTGTT
CCACATTGCAATCCGT
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protein sequence of EsuBft1054_4a-0001

>EsuBft1054_4 ID=EsuBft1054_4|Name=EsuBft1054_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=342bp
MRPFDPKAYYNHGVCIDALGEKEAALSSFEKAFDLQPSLADAGANAAGLL
IQSGEAERACTLCLLALDGNPDCAAALYNLNTALRMAGRPREAIALSWRW
IRERLPAGTPSYASAVSLENLAAASSSNSEDGGNPRPSAVATTRAELPRF
GGSIGGFESEVGKRMVCVEDCSAEGSAAKEQGADGASRLTVVCIRWGPKY
GPEYVERLAAGVRRNLLRDHRFVCFTDDVEALSEMPGVVARPLGSARRGE
WRGWWHKAFLFSRETTLAGRVMYIDLDTVIADSLDDIAGYAGPFAVLSAE
GMANERRPGGLNSSVMSWDAGSEVNTVQPVYDLLKEAYAVVS
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mRNA from alignment at Scaffold_128:24152..26181-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1054_4a-0001 ID=EsuBft1054_4a-0001|Name=EsuBft1054_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2030bp|location=Sequence derived from alignment at Scaffold_128:24152..26181- (Ectocarpus subulatus male Bft15b)
ATGAGGTATGTCATCGCCGTTCGGTTCTGGGCTAATATAGTTCCCATACT
CGACCCCACCCTCTGCGGGAAAAATGCGGTGTTACGCGAAGGGTCGACAA
ATTGTCACAGCGGACCAACAAATACGGTCGAATACCAGCCTTACTGGCAC
GCAGAAACTGTGCCCCAAAAGCCGCCGGGAGAACGAGTTGTAGGCCTGAC
AGCCACCGAGACCTCTTCCGCTCCAACATGGCCATTAGCAGTGAGCCCAT
TGTGTGCAGGTTGTAGTTTGTAGCCCCTACTGCTGCTTCCTGCTGCTGCT
GCTGATGCTGGTGCTGCCTTTGTCGTTTGCACCCATGCCCCACGACACGC
CGTATTCTGAACAGGGTTGAAAAGTAGCAGTGGACCGGTTACACGTACCC
AACCTGTGTCACCGCGCCGAAATCTTTCACCAGGCCGTTCGATCCCAAGG
CGTACTACAATCATGGCGTCTGTATTGATGCCTTGGGAGAAAAGGAAGCG
GCGCTCTCTAGCTTCGAGAAAGCTTTCGATCTGCAACCGAGCTTGGCAGA
TGCTGGGGCGAACGCGGCTGGCCTGCTCATTCAATCTGGCGAAGCCGAGC
GCGCCTGCACCCTCTGTTTGCTCGTGAGTGTCTCATTAACGTTTTGCTGC
CATAGTTACACACATTCCGCCACCTGTGTGATAACCTTGTGCTGGCATAT
GCTGATGCGCTGTTGTTGCAGCCAAGCTGTCCTATGCTTTGGCCGGCCCC
TTCATTGAGCTAGAAAGAAACTGACAAGCTTGGTCGTTTGACCGGTTGAC
TTACGGCAGGCACTTGACGGGAACCCCGACTGCGCAGCCGCGTTGTACAA
TCTGAACACCGCTCTGCGAATGGCCGGGCGACCCAGGGAAGCGATCGCCT
TGTCGTGGAGATGGATCCGGGAACGGCTTCCCGCGGGCACCCCGAGTTAC
GCCTCGGCAGTTTCCTTGGAAAACCTGGCCGCTGCATCCAGTAGCAACAG
CGAAGACGGAGGTAATCCTCGCCCTTCTGCTGTTGCAACGACGAGAGCGG
AGCTGCCACGTTTTGGTGGCTCGATAGGAGGCTTCGAATCGGAGGTCGGA
AAGAGAATGGTCTGCGTTGAAGATTGCTCTGCTGAAGGTTCGGCAGCCAA
AGAACAAGGCGCGGACGGAGCGAGTCGTCTCACAGTTGTGTGCATTCGGT
GGGGGCCCAAGTACGGGCCGGAATACGTGGAGAGGCTGGCGGCGGGTGTA
CGACGAAACTTGCTGAGGGACCACCGCTTCGTGTGCTTCACTGATGATGT
GGAAGCGCTTAGCGAGATGCCTGGGGTGGTGGCAAGGCCGCTCGGTTCGG
CTAGGCGTGGGGAGTGGCGAGGGTGGTGGCACAAGGCGTTCCTGTTCTCG
AGGTGAATCCGGGTGTCGTTGTGACGAGCGACATACATCCACGGTACCAT
CGAGTCCCCGCAGTATTTTCACGAGGGGGCAATAGGTGGCGGCAGGATAC
GTCGATTCTAGGTTTCAAGCCCCCGCTTTGGTGGCATACGATAGTTGCAA
GGATCATGGGATCGGTCTTCTTGTTCGCTCAACTGCCTTGCTGCTCCTCA
CTCTTGGTATCATTGCCAAAATCGCCCCCGAGGTGCCGCACATGCAACGT
ACATTTGTTTTTCGAGTGTGGAAATATAGACGTTTTGATTTTCGGTTGCG
TGAGTGTATTCTACGGCCCTGACTAAAACCCTGGGACATGTTGCCGACAC
AGGGAGACGACATTGGCTGGACGCGTTATGTACATCGACCTCGACACGGT
CATCGCCGACTCTTTGGATGACATCGCCGGCTATGCTGGTCCTTTTGCCG
TCCTTTCTGCGGAGGGGATGGCAAACGAGCGCCGTCCAGGGGGATTGAAC
AGCTCGGTCATGTCTTGGGATGCTGGTAGCGAAGTAAATACCGTCCAGCC
TGTGTACGATCTGCTGAAAGAGGCATATGCGGTGGTGAGCTAAGTCAACC
TCGTTGTCGTTGTTCCACATTGCAATCCGT
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Coding sequence (CDS) from alignment at Scaffold_128:24152..26181-

>EsuBft1054_4a-0001 ID=EsuBft1054_4a-0001|Name=EsuBft1054_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1029bp|location=Sequence derived from alignment at Scaffold_128:24152..26181- (Ectocarpus subulatus male Bft15b)
ATGAGGCCGTTCGATCCCAAGGCGTACTACAATCATGGCGTCTGTATTGA
TGCCTTGGGAGAAAAGGAAGCGGCGCTCTCTAGCTTCGAGAAAGCTTTCG
ATCTGCAACCGAGCTTGGCAGATGCTGGGGCGAACGCGGCTGGCCTGCTC
ATTCAATCTGGCGAAGCCGAGCGCGCCTGCACCCTCTGTTTGCTCGCACT
TGACGGGAACCCCGACTGCGCAGCCGCGTTGTACAATCTGAACACCGCTC
TGCGAATGGCCGGGCGACCCAGGGAAGCGATCGCCTTGTCGTGGAGATGG
ATCCGGGAACGGCTTCCCGCGGGCACCCCGAGTTACGCCTCGGCAGTTTC
CTTGGAAAACCTGGCCGCTGCATCCAGTAGCAACAGCGAAGACGGAGGTA
ATCCTCGCCCTTCTGCTGTTGCAACGACGAGAGCGGAGCTGCCACGTTTT
GGTGGCTCGATAGGAGGCTTCGAATCGGAGGTCGGAAAGAGAATGGTCTG
CGTTGAAGATTGCTCTGCTGAAGGTTCGGCAGCCAAAGAACAAGGCGCGG
ACGGAGCGAGTCGTCTCACAGTTGTGTGCATTCGGTGGGGGCCCAAGTAC
GGGCCGGAATACGTGGAGAGGCTGGCGGCGGGTGTACGACGAAACTTGCT
GAGGGACCACCGCTTCGTGTGCTTCACTGATGATGTGGAAGCGCTTAGCG
AGATGCCTGGGGTGGTGGCAAGGCCGCTCGGTTCGGCTAGGCGTGGGGAG
TGGCGAGGGTGGTGGCACAAGGCGTTCCTGTTCTCGAGGGAGACGACATT
GGCTGGACGCGTTATGTACATCGACCTCGACACGGTCATCGCCGACTCTT
TGGATGACATCGCCGGCTATGCTGGTCCTTTTGCCGTCCTTTCTGCGGAG
GGGATGGCAAACGAGCGCCGTCCAGGGGGATTGAACAGCTCGGTCATGTC
TTGGGATGCTGGTAGCGAAGTAAATACCGTCCAGCCTGTGTACGATCTGC
TGAAAGAGGCATATGCGGTGGTGAGCTAA
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