EsuBft1054_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1054_2a-0001
Unique NameEsuBft1054_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_128contigScaffold_128:49569..52600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog400682.PAC_15725762
ProteomeIdEsuBft1054_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl33208|Metazoa
Length264
Hectar predicted targeting categoryother localisation
Evalue1.22e-31
EggNOG OGs2CC8B@1|root,2S3BW@2759|Eukaryota,3A3QP@33154|Opisthokonta,3C1YH@33208|Metazoa
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1054_2aEsuBft1054_2aEctocarpus subulatus male Bft15bgeneScaffold_128 49569..52600 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1054_2a-0001-exonagat-exon-107058Ectocarpus subulatus male Bft15bexonScaffold_128 49569..51621 -
EsuBft1054_2a-0001-exonagat-exon-107057Ectocarpus subulatus male Bft15bexonScaffold_128 51853..51857 -
EsuBft1054_2a-0001-exonEsuBft1054_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_128 52012..52600 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1054_2a-0001-exonagat-three_prime_utr-526Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_128 49569..51543 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1054_2a-0001-cdsEsuBft1054_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_128 51544..51621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1054_2a-0001EsuBft1054_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_128 51544..52600 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1054_2a-0001 ID=EsuBft1054_2a-0001|Name=EsuBft1054_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2647bp|location=Sequence derived from alignment at Scaffold_128:49569..52600- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCTGGGAGCGTACCCGTCGAGCTCCAGGGCCTGACCCAGACGGA
GGAGATGCTCATCGCGCGGTGCTGTCCGATCATGCGCGTCCTCCACCTCA
AGGGTGGGCAGCTAGGGTACGGTGGCCATGTCGTCAACGTCGCTCAGGAC
ATCAGTACCTTAGCCGCTGCCCTCCCCAGGTTGGCCGCCGATGTACCGAT
CATCATCATCCGGAGGGAGGGGCAGGAACCCGGCCAGCACAAGGACCTAC
ACGTGCGGAGGGCTCGCGTGCAACGGGCTTTGCAATGGCTCATTGCCAAC
AACCCGTACTACCGCGACATCGTCCTTGACAACACGGCCCTATCCCAGCT
CCCCGTCGACGGGCAACTACGTGGACTGCGAACCACCGTCAGCGGGGGAG
ACTCGGAGCGTGACCTTGGCCCTCGGGGGGAGGGGGGAGGGGAGGAGGAC
GGCGATAGCGATAGGATTGGTAACCTTGGAAATTCGCCGACGATGAAGGC
TAGGCTGCAGGAAGAGGTTAGACTTGGGGAGTTAGCACAGAGTACGAGGG
TCAAGTACACGGACATGGGCGTCTTCAGCGCCGTCGCGGGTGTAGCCGCT
GTAAAGCCCCTACGCAGCCTCACGTCGCGACCAGTAAAGCAGCACCCGGT
CTACAGCCACCACAGCCTCTAGCACCGCCGTAGAAATTTACGAGGTGTGT
CCTTTTCCGCTTGTCTGGATAAGAATTTTGTTCGAATGTCGTTTTGGCGG
TGGTAGAGCCGTGTTTGCCCGCATGGAAAACATGGCCTCTCCCAAGTGCT
AGAAACTGCTACAGCTACTCCGGCAAATTCATCAGCTTGCGCCGGTGATA
CTGCAGACTGGCCCTGCGGATGGCCTTGGTGAGGAGGTCCGCGTGTTGCT
CCGTTGTCGGGACAAACTTGACCGAAATATCCCCCGACCTTAACAATCCG
CGGATGAAATGAAACCGCACGTCGATGTGTTTCGTGCGACCTGAGCTGAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNCTTGTTCCATGCCTACCATGGTGTTTTTGTACAGACAGCACTTCAGA
CAGCAAGTATGCTGTAGTCGGCAATCATTCGTTTTGGTACAGAGTGGGAC
AAGTAGGGGGTGATGTTGCTGTAGTCGAACGGTGAGACGGACGTGTAGTT
CAGTTTTGGGCACGCGTACGGTGCTGCAGGGATTATATATAGGTGTAGTA
GTACCTCTTCGGGCTCTTGTACACCTTTTTCTTGCTACGTGTGCGTGTTC
TTTAGATCCTCAGATGGCTCCAGCACTTTCGTGACCACGGGCCGAGAGTC
TTTGCTAGATTTTGGCATTTAGCAACTGGCATACGGTTTAATGTGAAGTC
AACAACAACAACAACAGTCCCCGCATTTTCATGGTGAGACGTGTACTACA
TGTTTCAGCGTATGTAGAGTACTACACTTTTCAGTGCATATTTCGTACAA
CTACAACCATCCAAGGTCACACAGGAGGGGGTAAACACCAGGGCTTTTCT
CTTCTTTTTATTTCTTTTCATGCCCCACCTTCCTCCTGCGGTGCGTGCTG
AATTTTTATTTTTATCGCGAGAAAGGTCCAGCCGTCCCTTTCCCTCGTCA
ACGGTGCTACCGCCGAAGTTTGGTACCCACGGGAGCTTGTCAGCTATATT
TCGCTTTCACCCGCACATTTCGTAAATGTTTCACCCCATGGGGATTC
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protein sequence of EsuBft1054_2a-0001

>EsuBft1054_2 ID=EsuBft1054_2|Name=EsuBft1054_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=223bp
MDPGSVPVELQGLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQD
ISTLAAALPRLAADVPIIIIRREGQEPGQHKDLHVRRARVQRALQWLIAN
NPYYRDIVLDNTALSQLPVDGQLRGLRTTVSGGDSERDLGPRGEGGGEED
GDSDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGVFSAVAGVAA
VKPLRSLTSRPVKQHPVYSHHSL
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mRNA from alignment at Scaffold_128:49569..52600-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1054_2a-0001 ID=EsuBft1054_2a-0001|Name=EsuBft1054_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3032bp|location=Sequence derived from alignment at Scaffold_128:49569..52600- (Ectocarpus subulatus male Bft15b)
ATGGATCCTGGGAGCGTACCCGTCGAGCTCCAGGGCCTGACCCAGACGGA
GGAGATGCTCATCGCGCGGTGCTGTCCGATCATGCGCGTCCTCCACCTCA
AGGGTGGGCAGCTAGGGTACGGTGGCCATGTCGTCAACGTCGCTCAGGAC
ATCAGTACCTTAGCCGCTGCCCTCCCCAGGTTGGCCGCCGATGTACCGAT
CATCATCATCCGGAGGGAGGGGCAGGAACCCGGCCAGCACAAGGACCTAC
ACGTGCGGAGGGCTCGCGTGCAACGGGCTTTGCAATGGCTCATTGCCAAC
AACCCGTACTACCGCGACATCGTCCTTGACAACACGGCCCTATCCCAGCT
CCCCGTCGACGGGCAACTACGTGGACTGCGAACCACCGTCAGCGGGGGAG
ACTCGGAGCGTGACCTTGGCCCTCGGGGGGAGGGGGGAGGGGAGGAGGAC
GGCGATAGCGATAGGATTGGTAACCTTGGAAATTCGCCGACGATGAAGGC
TAGGCTGCAGGAAGAGGTTAGACTTGGGGAGTTAGCACAGAGTACGAGGG
TCAAGTACACGGACATGGGCGTCTTCAGCGCCGTCGCGGGTAACCAATGA
CGTGAATTGCAAAGAGAAAAAGAAGAAGAAAGGGTCTCTTCCACCTCCCG
CGGACGCACACGTCTGACGACAGTTACATCTATCAGCTGTCGCTCGTTTT
AGCGACAGCTACTATATCTTTTCTGCAAGTGTAACCGCGGCAGGTGTAGT
ACGTGAATTCCATGATCGAGTTCAACCAACACACACTGGTGGGACGACGT
ACGAGGCCAGTAGCAGCACGCAGAAAGAGATCCGAAGTTATTCGGAGCCC
ATGGCGGTGAGGAACCTCGGTTCTAGCGTTTCCCCCCGCATTTTGGCCGA
AGCGAAACAAAAATTTAATGTAGAACCTGAAATTTTAAGAAGTTGTTCCG
GCAACAGAATCGGGTCTCCGCTGCCTCAGGCCGCTGTAAAGCCCCTACGC
AGCCTCACGTCGCGACCAGTAAAGCAGCACCCGGTCTACAGCCACCACAG
CCTCTAGCACCGCCGTAGAAATTTACGAGGTGTGTCCTTTTCCGCTTGTC
TGGATAAGAATTTTGTTCGAATGTCGTTTTGGCGGTGGTAGAGCCGTGTT
TGCCCGCATGGAAAACATGGCCTCTCCCAAGTGCTAGAAACTGCTACAGC
TACTCCGGCAAATTCATCAGCTTGCGCCGGTGATACTGCAGACTGGCCCT
GCGGATGGCCTTGGTGAGGAGGTCCGCGTGTTGCTCCGTTGTCGGGACAA
ACTTGACCGAAATATCCCCCGACCTTAACAATCCGCGGATGAAATGAAAC
CGCACGTCGATGTGTTTCGTGCGACCTGAGCTGAGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGTTCCATGC
CTACCATGGTGTTTTTGTACAGACAGCACTTCAGACAGCAAGTATGCTGT
AGTCGGCAATCATTCGTTTTGGTACAGAGTGGGACAAGTAGGGGGTGATG
TTGCTGTAGTCGAACGGTGAGACGGACGTGTAGTTCAGTTTTGGGCACGC
GTACGGTGCTGCAGGGATTATATATAGGTGTAGTAGTACCTCTTCGGGCT
CTTGTACACCTTTTTCTTGCTACGTGTGCGTGTTCTTTAGATCCTCAGAT
GGCTCCAGCACTTTCGTGACCACGGGCCGAGAGTCTTTGCTAGATTTTGG
CATTTAGCAACTGGCATACGGTTTAATGTGAAGTCAACAACAACAACAAC
AGTCCCCGCATTTTCATGGTGAGACGTGTACTACATGTTTCAGCGTATGT
AGAGTACTACACTTTTCAGTGCATATTTCGTACAACTACAACCATCCAAG
GTCACACAGGAGGGGGTAAACACCAGGGCTTTTCTCTTCTTTTTATTTCT
TTTCATGCCCCACCTTCCTCCTGCGGTGCGTGCTGAATTTTTATTTTTAT
CGCGAGAAAGGTCCAGCCGTCCCTTTCCCTCGTCAACGGTGCTACCGCCG
AAGTTTGGTACCCACGGGAGCTTGTCAGCTATATTTCGCTTTCACCCGCA
CATTTCGTAAATGTTTCACCCCATGGGGATTC
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Coding sequence (CDS) from alignment at Scaffold_128:49569..52600-

>EsuBft1054_2a-0001 ID=EsuBft1054_2a-0001|Name=EsuBft1054_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=672bp|location=Sequence derived from alignment at Scaffold_128:49569..52600- (Ectocarpus subulatus male Bft15b)
ATGGATCCTGGGAGCGTACCCGTCGAGCTCCAGGGCCTGACCCAGACGGA
GGAGATGCTCATCGCGCGGTGCTGTCCGATCATGCGCGTCCTCCACCTCA
AGGGTGGGCAGCTAGGGTACGGTGGCCATGTCGTCAACGTCGCTCAGGAC
ATCAGTACCTTAGCCGCTGCCCTCCCCAGGTTGGCCGCCGATGTACCGAT
CATCATCATCCGGAGGGAGGGGCAGGAACCCGGCCAGCACAAGGACCTAC
ACGTGCGGAGGGCTCGCGTGCAACGGGCTTTGCAATGGCTCATTGCCAAC
AACCCGTACTACCGCGACATCGTCCTTGACAACACGGCCCTATCCCAGCT
CCCCGTCGACGGGCAACTACGTGGACTGCGAACCACCGTCAGCGGGGGAG
ACTCGGAGCGTGACCTTGGCCCTCGGGGGGAGGGGGGAGGGGAGGAGGAC
GGCGATAGCGATAGGATTGGTAACCTTGGAAATTCGCCGACGATGAAGGC
TAGGCTGCAGGAAGAGGTTAGACTTGGGGAGTTAGCACAGAGTACGAGGG
TCAAGTACACGGACATGGGCGTCTTCAGCGCCGTCGCGGGTGTAGCCGCT
GTAAAGCCCCTACGCAGCCTCACGTCGCGACCAGTAAAGCAGCACCCGGT
CTACAGCCACCACAGCCTCTAG
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