EsuBft1053_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1053_8a-0001
Unique NameEsuBft1053_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_550contigScaffold_550:36345..37139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft1053_8
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Notetransposon tx1 uncharacterized 149 kda protein os:xenopus laevis pe:3 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl33208|Metazoa
Length744
Evalue1.12e-40
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1053_8aEsuBft1053_8aEctocarpus subulatus male Bft15bgeneScaffold_550 36345..37139 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1053_8a-0001-exonEsuBft1053_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_550 36345..36740 +
EsuBft1053_8a-0001-exonagat-exon-21094Ectocarpus subulatus male Bft15bexonScaffold_550 36792..37139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1053_8a-0001-cdsEsuBft1053_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_550 36345..36740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1053_8a-0001EsuBft1053_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_550 36345..37139 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1053_8a-0001 ID=EsuBft1053_8a-0001|Name=EsuBft1053_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=744bp|location=Sequence derived from alignment at Scaffold_550:36345..37139+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGGATTACTAGTACTACATCAACACCTCAAGAGATCAGTGGGCCT
CAGCGGGAGACATGCGGGGGGACAACAGTTCGTCGCGGATGAGAACGGCG
TGTTGCTCAGGAACAGGGACGACATCCTCCAGCGGTGGGCGAGATTCTTC
AGCACCCTACTCAACACCAAATCCCCCACCCTGAACCCAGACATCATCGA
ACGAGTGACGCAGCGGCGAGCGACACGTGACACTCAACGGTTGGGAGATG
TGCCAGAACTCGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAGAACTGG
AAGGCACCCGGCCATGACTCCCTCCCTGCCGAGTTGCTCAAGATCGATGA
CGACGAACCCTTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTAC
TGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGTTTTCG
CTACTATCTCAAGCAGGCAAGGTCCCCGTCAAGATCATCGCCAACCATCT
AAGCGCATTCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCAGAT
TTCGACCCGGGCGATCCACCGTCGACATGCTGTTCATCGTGCGCCGGGTC
CAGGAGCTGGGGCGGAGAAAGACAATACCGCTCTACATGTGCTTCGTCGA
CTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTGC
TGGCCAGGGCCGGGATTCCCGCGGAGCTGATCGAAGTCATCTNA
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protein sequence of EsuBft1053_8a-0001

>EsuBft1053_8 ID=EsuBft1053_8|Name=EsuBft1053_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=248bp
MRGLLVLHQHLKRSVGLSGRHAGGQQFVADENGVLLRNRDDILQRWARFF
STLLNTKSPTLNPDIIERVTQRRATRDTQRLGDVPELEEVARATKGLKNW
KAPGHDSLPAELLKIDDDEPFVLGHLHTILVKVLYKKGDRSNCNNYRGFS
LLSQAGKVPVKIIANHLSAFCEANNILPEEQCRFRPGRSTVDMLFIVRRV
QELGRRKTIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAELIEVIX
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mRNA from alignment at Scaffold_550:36345..37139+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1053_8a-0001 ID=EsuBft1053_8a-0001|Name=EsuBft1053_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=795bp|location=Sequence derived from alignment at Scaffold_550:36345..37139+ (Ectocarpus subulatus male Bft15b)
ATGCGAGGATTACTAGTACTACATCAACACCTCAAGAGATCAGTGGGCCT
CAGCGGGAGACATGCGGGGGGACAACAGTTCGTCGCGGATGAGAACGGCG
TGTTGCTCAGGAACAGGGACGACATCCTCCAGCGGTGGGCGAGATTCTTC
AGCACCCTACTCAACACCAAATCCCCCACCCTGAACCCAGACATCATCGA
ACGAGTGACGCAGCGGCGAGCGACACGTGACACTCAACGGTTGGGAGATG
TGCCAGAACTCGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAGAACTGG
AAGGCACCCGGCCATGACTCCCTCCCTGCCGAGTTGCTCAAGATCGATGA
CGACGAACCCTTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTGT
GGAACGGAGGAGACATCTCGCGAGAGTAAAAGGATGCAACCATCCAGGTA
CTGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGTTTTC
GCTACTATCTCAAGCAGGCAAGGTCCCCGTCAAGATCATCGCCAACCATC
TAAGCGCATTCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCAGA
TTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCATCGTGCGCCGGGT
CCAGGAGCTGGGGCGGAGAAAGACAATACCGCTCTACATGTGCTTCGTCG
ACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTG
CTGGCCAGGGCCGGGATTCCCGCGGAGCTGATCGAAGTCATCTNA
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Coding sequence (CDS) from alignment at Scaffold_550:36345..37139+

>EsuBft1053_8a-0001 ID=EsuBft1053_8a-0001|Name=EsuBft1053_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=744bp|location=Sequence derived from alignment at Scaffold_550:36345..37139+ (Ectocarpus subulatus male Bft15b)
ATGCGAGGATTACTAGTACTACATCAACACCTCAAGAGATCAGTGGGCCT
CAGCGGGAGACATGCGGGGGGACAACAGTTCGTCGCGGATGAGAACGGCG
TGTTGCTCAGGAACAGGGACGACATCCTCCAGCGGTGGGCGAGATTCTTC
AGCACCCTACTCAACACCAAATCCCCCACCCTGAACCCAGACATCATCGA
ACGAGTGACGCAGCGGCGAGCGACACGTGACACTCAACGGTTGGGAGATG
TGCCAGAACTCGAGGAGGTGGCACGGGCAACGAAAGGCCTCAAGAACTGG
AAGGCACCCGGCCATGACTCCCTCCCTGCCGAGTTGCTCAAGATCGATGA
CGACGAACCCTTCGTCCTGGGACACCTCCATACCATCCTCGTCAAGGTAC
TGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGTTTTCG
CTACTATCTCAAGCAGGCAAGGTCCCCGTCAAGATCATCGCCAACCATCT
AAGCGCATTCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCAGAT
TTCGACCCGGGCGATCCACCGTCGACATGCTGTTCATCGTGCGCCGGGTC
CAGGAGCTGGGGCGGAGAAAGACAATACCGCTCTACATGTGCTTCGTCGA
CTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGTGC
TGGCCAGGGCCGGGATTCCCGCGGAGCTGATCGAAGTCATCTNA
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