EsuBft1053_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1053_7a-0001
Unique NameEsuBft1053_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_550contigScaffold_550:43821..45119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1053_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length86
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_004880.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1053_7aEsuBft1053_7aEctocarpus subulatus male Bft15bgeneScaffold_550 43821..45119 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1053_7a-0001-exonEsuBft1053_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_550 43821..43999 +
EsuBft1053_7a-0001-exonagat-exon-21093Ectocarpus subulatus male Bft15bexonScaffold_550 44437..45119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1053_7a-0001-cdsEsuBft1053_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_550 43821..43999 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1053_7a-0001-exonagat-three_prime_utr-525Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_550 44591..45119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1053_7a-0001EsuBft1053_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_550 43821..44590 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1053_7a-0001 ID=EsuBft1053_7a-0001|Name=EsuBft1053_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=862bp|location=Sequence derived from alignment at Scaffold_550:43821..45119+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCGATGCAGGGCGAGCTGTGACGATTTGAGGAGCGCCCTCTCCTC
TCCTCTCACGGGGGATACCACCCTCGAACTCTCCGGAGACGCCGACTGCC
CCATCCTCGAAGACAATGAGCTGGAGGAGTTCACTGTCGAGGGCGGAACG
CTGACCCTCACCGGCCCGTCCACCACCAAATTCACGAACCTCAAGTTCAC
CATCATGGACCAGGCTGGCCTAATCTTCGACTACGACACGACTGAGTTCG
GCCCCAACCTTGGCTATGTAAGATGCGTCCGTCCATTCCTCTTTTGTGTG
CAAGCAATTCAGAATGTTGCGAGGTTATCATGAACACGTCTGGCGGGTGG
GGGCTGGGGGGGGGGCATGCGTAGTACGATTCTGCGTAGTACGATTCTGT
GTTTGGTAGACTTTGCAGGCGAGTCACGCTCGTAATACCGTTGGTGATGG
TCTCCAAATCCCTTTTCGGGAATACATCTCCTATTGTAGAGACAGCATGT
GGTTTCATTACACGCGTTGCGCCGTTGAAATAATTTCGGGGCAATCTTGT
TTCTCTTCGGCAGCTTACAGCGGTGGGTTGTATCGCGCGGCGATTCCGGG
GTGATTTTGAAGGCCGGAAAGTTGTGGTGTACATCCTGGCACACCTTTTG
GAACGCCGGGGGTTACTTATTTGAGTTCCACAGCTTATCTGCTTTCGGGC
CGAAGGTGGTTGTAAGAACGTATCTACCCTAGTTTTTTCCTCTCTCGTCG
GAAAGTTGACACCAAAACACACGACGGACACACGAGTCTTTTTTCTTTTT
GCATGGAACAGAGCCAGCTGCTTTGGCAAGTACTTCGAAGTACCAAATTG
GTTGACCCCCAC
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protein sequence of EsuBft1053_7a-0001

>EsuBft1053_7 ID=EsuBft1053_7|Name=EsuBft1053_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=110bp
MIRCRASCDDLRSALSSPLTGDTTLELSGDADCPILEDNELEEFTVEGGT
LTLTGPSTTKFTNLKFTIMDQAGLIFDYDTTEFGPNLGYVRCVRPFLFCV
QAIQNVARLS
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mRNA from alignment at Scaffold_550:43821..45119+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1053_7a-0001 ID=EsuBft1053_7a-0001|Name=EsuBft1053_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1299bp|location=Sequence derived from alignment at Scaffold_550:43821..45119+ (Ectocarpus subulatus male Bft15b)
ATGATCCGATGCAGGGCGAGCTGTGACGATTTGAGGAGCGCCCTCTCCTC
TCCTCTCACGGGGGATACCACCCTCGAACTCTCCGGAGACGCCGACTGCC
CCATCCTCGAAGACAATGAGCTGGAGGAGTTCACTGTCGAGGGCGGAACG
CTGACCCTCACCGGCCCGTCCACCACCAAGTGAGTGCGCGTGTGTTGTGT
GCGTGTGTTTAGGAAGAATAGGTGTGTTCGTCCCACTTACTCTGGCGCCG
GTTCACAGGCCTTCCGGCGTATATAGCTGAGGTATCAGCCGGGGTAATCA
CAAGAGGAAGGTCACACTGGAGGAACGTTTTTCTTGTTTTTCGTTTTGTT
TCATTGCCCCACGTTTCCCCCTGTGGTGCTTGCCTTAGTTCGTATCGGGG
GAAGCGCTGAGCCGTCCCTTTCCCCTCGTCGACCGCGAAGCCGGAGTGAG
TGCGCCACCAGAACAAAAACAAGCAAACGGCAGCGGGTCTTCAGTCGTTG
GTTGCAGCTAGAAAGGAAGAACGAAGGAGAGTGTTTACGCGGGTTTTTGG
TTTGGCGCAAACCCGTCCCACCCCGCCGCCTCGTCCCGTCCCATGATTGA
TTTTCGCCATCCCAAGATTCACGAACCTCAAGTTCACCATCATGGACCAG
GCTGGCCTAATCTTCGACTACGACACGACTGAGTTCGGCCCCAACCTTGG
CTATGTAAGATGCGTCCGTCCATTCCTCTTTTGTGTGCAAGCAATTCAGA
ATGTTGCGAGGTTATCATGAACACGTCTGGCGGGTGGGGGCTGGGGGGGG
GGCATGCGTAGTACGATTCTGCGTAGTACGATTCTGTGTTTGGTAGACTT
TGCAGGCGAGTCACGCTCGTAATACCGTTGGTGATGGTCTCCAAATCCCT
TTTCGGGAATACATCTCCTATTGTAGAGACAGCATGTGGTTTCATTACAC
GCGTTGCGCCGTTGAAATAATTTCGGGGCAATCTTGTTTCTCTTCGGCAG
CTTACAGCGGTGGGTTGTATCGCGCGGCGATTCCGGGGTGATTTTGAAGG
CCGGAAAGTTGTGGTGTACATCCTGGCACACCTTTTGGAACGCCGGGGGT
TACTTATTTGAGTTCCACAGCTTATCTGCTTTCGGGCCGAAGGTGGTTGT
AAGAACGTATCTACCCTAGTTTTTTCCTCTCTCGTCGGAAAGTTGACACC
AAAACACACGACGGACACACGAGTCTTTTTTCTTTTTGCATGGAACAGAG
CCAGCTGCTTTGGCAAGTACTTCGAAGTACCAAATTGGTTGACCCCCAC
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Coding sequence (CDS) from alignment at Scaffold_550:43821..45119+

>EsuBft1053_7a-0001 ID=EsuBft1053_7a-0001|Name=EsuBft1053_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=333bp|location=Sequence derived from alignment at Scaffold_550:43821..45119+ (Ectocarpus subulatus male Bft15b)
ATGATCCGATGCAGGGCGAGCTGTGACGATTTGAGGAGCGCCCTCTCCTC
TCCTCTCACGGGGGATACCACCCTCGAACTCTCCGGAGACGCCGACTGCC
CCATCCTCGAAGACAATGAGCTGGAGGAGTTCACTGTCGAGGGCGGAACG
CTGACCCTCACCGGCCCGTCCACCACCAAATTCACGAACCTCAAGTTCAC
CATCATGGACCAGGCTGGCCTAATCTTCGACTACGACACGACTGAGTTCG
GCCCCAACCTTGGCTATGTAAGATGCGTCCGTCCATTCCTCTTTTGTGTG
CAAGCAATTCAGAATGTTGCGAGGTTATCATGA
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