EsuBft1053_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1053_5a-0001
Unique Name	EsuBft1053_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_550	contig	Scaffold_550:57010..61213 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1053_5
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	351
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Mannuronan C-5-epimerase 4
Ec32 ortholog	Ec-20_004700.2
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1053_5a	EsuBft1053_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_550 57010..61213 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1053_5a-0001	EsuBft1053_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_550 60998..61213 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1053_5a-0001-exon	agat-exon-21080	Ectocarpus subulatus male Bft15b	exon	Scaffold_550 57010..57316 -
EsuBft1053_5a-0001-exon	agat-exon-21081	Ectocarpus subulatus male Bft15b	exon	Scaffold_550 57465..57641 -
EsuBft1053_5a-0001-exon	EsuBft1053_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_550 57704..60481 -
EsuBft1053_5a-0001-exon	agat-exon-21079	Ectocarpus subulatus male Bft15b	exon	Scaffold_550 60958..61213 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1053_5a-0001-exon	agat-three_prime_utr-519	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_550 57010..57316 -
EsuBft1053_5a-0001-exon	agat-three_prime_utr-520	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_550 57465..57641 -
EsuBft1053_5a-0001-exon	agat-three_prime_utr-521	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_550 57704..60481 -
EsuBft1053_5a-0001-exon	agat-three_prime_utr-522	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_550 60958..60997 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1053_5a-0001-cds	EsuBft1053_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_550 60998..61213 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_550:57010..61213-
coding sequence from alignment at Scaffold_550:57010..61213-

spliced messenger RNA

>EsuBft1053_5a-0001 ID=EsuBft1053_5a-0001|Name=EsuBft1053_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3518bp|location=Sequence derived from alignment at Scaffold_550:57010..61213- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCTCCGCGGCCGTAACCAAACCCCCCTTTTGAAATCGGTGCCCAC
CGAAACCGAACACGACCAAACGAACACGACCAAAACGTGTCCCAGATTCA
CACGGTCTGACGAGACCCGGTTGTGGAATAACACGGGTGGCGCCGCGGAT
TCACCCCCCTACGTGGAGGATTCGTGCTTCACCGCAGACTCGGGGCTGTC
CCCTGAGTGCACATAATATAAGAATAGTAGTAACTTTCTCTTTTTTGGGG
AGCACGGTATGCGCCCCGCCAGCCGCTTTTGAGTGTTTTTTTACAGGCTA
GCGTGTTCCCGGCGTCGTCCCGAACGATGGACCAACATCACGCGGTCGTT
GCGTTGTTGACCACTGACTCACTCACTCCCCTGCTTGCGGGGAAACATGG
CTCGTATCACCGAGCGGTGTTTATTCCGAGTCTAGGCCGCCGGTGGTCCC
GTCGAAATTCACTTGAGAAAGACATTCCGGTCTTTCTCCCCCAAGTTTCA
GGACTGATGTCACGACTGACTGCTGCTTCCTGATCTCCTGTGAGACATGT
GTTGCTGTCTTATGGTTCTGTTGCTGTTGTTGTTGTGTTTTTTGTTTTTT
AACCGACGAGAGCGGGCTGAGCTTTTCGCTTGCTCAATGATCCGCCACCC
CCCGCCTCCAACTGAGCCAGCATGGTCACACAGCGGGCAGTCACGCTAAG
TAGCCTGTTCCGCGTGCCCAGCGCAACAGCGCCGTTTCTCCCGCTGTTCT
GGGGTGCTAGCGTGTTTCGGTTGACGGTGTGCTTGGCGATTATTTGCTGA
CGTGCGGAGGGATGTGCCGAGACACTTTGGGAGGAGGAAGTAGGTGTGGG
CTGACGGTATCACAACTGGATTGATCGGTTCGGGCGTGGGAACTATGGTC
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCGGGTTCTCACCGGA
CCAGGCTCTCACATCACCAAGCGCGAAGCGCCGTGAGATATTCGGCGAGT
CGCATGAAGGGTGCGCTGCATCCTGCTAAGGGTTTTCGGCATCTTGTGCT
TGCTTCCTTGCGTGCGGATGACAGCTGCGTATGAATTAATTTATTTTCTG
GTGTTTTCACTTTCAGAGACAGTTGTAAGCACTGTGTAACTGCCTCGAGG
GTGCTTGACCATTTTAACACAACGTGGTGCGATCATCCCCCTTGTACGGA
GTGAGGGTTCTCCACCCCGCACAACATGATCTACTCGACCACCATTATGG
TTATCGGAGGGGGGGGGGAGGGCATAATATGTTGGCTGCCTGTGCTTAAA
TGCTTAAGTGCTCGGGGGCATCTCTTATCGATTGAAGAGAGGGAAGAGCC
AGAGCACCTGATGAGGGGCCACGTGTGACGCCGTGCCTTGGTCACCCACA
AGGCCATGTGCTTGCAGTTTTGCTATATTTATAAGTCGGTTGCGACCGTC
TCAATTATGATATTTGTCGTGATGAGTGTTGTTCGTCTTGTAGCAGTGTA
GCATAATGAGTAGCTATTTTTTGGGAATGAAAAAGTGCAGTGGATGGACG
GGTGGATATGATGACACGGTTAAAAGCGCTGACGACGTGTTTGGATGTGG
TGCCAGCGCGTATGACACGGTTGGCTGTGGTAGTCGTTGATGGTCGTTTC
GACTATCAGTCGTAACCATCACTCCCCAAAGCAGTGCTCTGTGCGCCGGT
CGGTGTTATTGATGTCATACCATGAGTTTCTGCGCTACCGCCGCCTCCCT
ACGCTTCTTCCCCTCACGACAGCAGTTCGTTTTCTCATTTTATCGCGTAG
GGAAAAACAAGTGTTTTTCCAGTATCAACAATGTTTTTGTTGCTTGTTTG
CATGTTTTTAATCAACAAAATGAACCCGGCTTCGTCCGTGGTGTTAGCTT
GCAGCAGCGTCGTTCCGCGTGTGTTTGTTGATTAGGGGCGGGAGGGGAGG
GAGTCAGCATTGACTGAAGGCGAAAGCAGCGCGTCTGTTGTCGGCGTGGG
GGTAGGGGAAGGTCGGGGTGGCCGTGCTGTGTGGTGGTATATACAACTTG
CTCGAAACGATGAAGACGTTGAGATGGCCCTTTTGCTGAATTATGATCAA
TCAATCGTGGACTCTTGTCTGAAAGCGCACGGAGCATACGTATTACAACC
CGCCGTTGTTATTCTCGTGCTTTCAATCGCTTCAGATGTTTTCCCATTGC
ACCATGTCAAAAGTGGAGTCACCTGCGCCCGGAGGTGATGGCATCGGGGG
AAGGAAGCGACATGCATACTGTACGGCTCAGCACCATCCATCTGTCTTAT
CTCCGGTCAGGTTCAACCCAGGGTAGGACGCCCTCCCTGACCTACCACGG
AACTGGTGTTCAGTAGTAATAGGTTGGTGTAGGCGTGTTGAGGCCCAGGG
GTGACGGGTCGGACTTACACAATGTGTTCGTTCGTGGTTTTGTTTCCAGT
TCATCTTGGAGAGTATTTAGTACTATGACAGAGGTTAATACTCTGCTGCT
GGCCGGGAGGGTCGAGCGAGGTGTTGAAGGGCTGCCAGCGTTTACTTTTT
GCGACGTGGTTTCGGTCGTCGTGTGAAAGTACTGCGAGCATTTTCGCGAC
AGACTGCAGTGTACGAAGTAGTACATCTTAGCACGATCTACCGTCCGACA
TGGATGGGGGTGTGCCTGCTACGGGTGTGAGTTGGATGATGATGCTTGCC
GAAACCAAAAAGATCGAT

protein sequence of EsuBft1053_5a-0001

>EsuBft1053_5 ID=EsuBft1053_5|Name=EsuBft1053_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=71bp
MHLRGRNQTPLLKSVPTETEHDQTNTTKTCPRFTRSDETRLWNNTGGAAD
SPPYVEDSCFTADSGLSPECT

mRNA from alignment at Scaffold_550:57010..61213-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1053_5a-0001 ID=EsuBft1053_5a-0001|Name=EsuBft1053_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4204bp|location=Sequence derived from alignment at Scaffold_550:57010..61213- (Ectocarpus subulatus male Bft15b)
ATGCACCTCCGCGGCCGTAACCAAACCCCCCTTTTGAAATCGGTGCCCAC
CGAAACCGAACACGACCAAACGAACACGACCAAAACGTGTCCCAGATTCA
CACGGTCTGACGAGACCCGGTTGTGGAATAACACGGGTGGCGCCGCGGAT
TCACCCCCCTACGTGGAGGATTCGTGCTTCACCGCAGACTCGGGGCTGTC
CCCTGAGTGCACATAATATAAGAATAGTAGTAACTTTCTCTTTTTTGGGG
AGCACGGTATGTAGATACGTACACACGGATGAGCGACCAATGAAGCAAGA
AGAGAGGCTCTATCCGGGTTTCGTTTTTTGTTGCTGGTGCGCGTGCGTTT
GTTGTTCGGAAAAAGCCCGGAATATGTATGGTACGGAAGGTACAATTTGT
GTTGATGAGGCGGGTGCCGACGGTGACTGCCTTGCTTGCCCGGGATCGAT
GATCTCGCCGGCTTTGTGCCTCCATCTGTCTTACTTGCCTGCTTTTGGTT
ATATATTCGTCGTGTTAGTGGGTGTCGTGATTGTACGGATGGATGCGTGT
GTGTGACGGTTTCCTTTTGTGGTTTTGAGGTGTTGCTCTCTCCCCCCCCC
GCGCCCCGCCAGCACAAGAAAGTACAACAGTTTCTTTTGTTTTCTTGTCG
TTTCCCGCCGAACACAAGCGCTACATAGCTAGGCTGCAGAACTTCCTAAC
CGCCTGCATGGCGCGCTCCGTCAAAAAAATAGGTATGCGCCCCGCCAGCC
GCTTTTGAGTGTTTTTTTACAGGCTAGCGTGTTCCCGGCGTCGTCCCGAA
CGATGGACCAACATCACGCGGTCGTTGCGTTGTTGACCACTGACTCACTC
ACTCCCCTGCTTGCGGGGAAACATGGCTCGTATCACCGAGCGGTGTTTAT
TCCGAGTCTAGGCCGCCGGTGGTCCCGTCGAAATTCACTTGAGAAAGACA
TTCCGGTCTTTCTCCCCCAAGTTTCAGGACTGATGTCACGACTGACTGCT
GCTTCCTGATCTCCTGTGAGACATGTGTTGCTGTCTTATGGTTCTGTTGC
TGTTGTTGTTGTGTTTTTTGTTTTTTAACCGACGAGAGCGGGCTGAGCTT
TTCGCTTGCTCAATGATCCGCCACCCCCCGCCTCCAACTGAGCCAGCATG
GTCACACAGCGGGCAGTCACGCTAAGTAGCCTGTTCCGCGTGCCCAGCGC
AACAGCGCCGTTTCTCCCGCTGTTCTGGGGTGCTAGCGTGTTTCGGTTGA
CGGTGTGCTTGGCGATTATTTGCTGACGTGCGGAGGGATGTGCCGAGACA
CTTTGGGAGGAGGAAGTAGGTGTGGGCTGACGGTATCACAACTGGATTGA
TCGGTTCGGGCGTGGGAACTATGGTCGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCGCCGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGCGC
GAAGCGCCGTGAGATATTCGGCGAGTCGCATGAAGGGTGCGCTGCATCCT
GCTAAGGGTTTTCGGCATCTTGTGCTTGCTTCCTTGCGTGCGGATGACAG
CTGCGTATGAATTAATTTATTTTCTGGTGTTTTCACTTTCAGAGACAGTT
GTAAGCACTGTGTAACTGCCTCGAGGGTGCTTGACCATTTTAACACAACG
TGGTGCGATCATCCCCCTTGTACGGAGTGAGGGTTCTCCACCCCGCACAA
CATGATCTACTCGACCACCATTATGGTTATCGGAGGGGGGGGGGAGGGCA
TAATATGTTGGCTGCCTGTGCTTAAATGCTTAAGTGCTCGGGGGCATCTC
TTATCGATTGAAGAGAGGGAAGAGCCAGAGCACCTGATGAGGGGCCACGT
GTGACGCCGTGCCTTGGTCACCCACAAGGCCATGTGCTTGCAGTTTTGCT
ATATTTATAAGTCGGTTGCGACCGTCTCAATTATGATATTTGTCGTGATG
AGTGTTGTTCGTCTTGTAGCAGTGTAGCATAATGAGTAGCTATTTTTTGG
GAATGAAAAAGTGCAGTGGATGGACGGGTGGATATGATGACACGGTTAAA
AGCGCTGACGACGTGTTTGGATGTGGTGCCAGCGCGTATGACACGGTTGG
CTGTGGTAGTCGTTGATGGTCGTTTCGACTATCAGTCGTAACCATCACTC
CCCAAAGCAGTGCTCTGTGCGCCGGTCGGTGTTATTGATGTCATACCATG
AGTTTCTGCGCTACCGCCGCCTCCCTACGCTTCTTCCCCTCACGACAGCA
GTTCGTTTTCTCATTTTATCGCGTAGGGAAAAACAAGTGTTTTTCCAGTA
TCAACAATGTTTTTGTTGCTTGTTTGCATGTTTTTAATCAACAAAATGAA
CCCGGCTTCGTCCGTGGTGTTAGCTTGCAGCAGCGTCGTTCCGCGTGTGT
TTGTTGATTAGGGGCGGGAGGGGAGGGAGTCAGCATTGACTGAAGGCGAA
AGCAGCGCGTCTGTTGTCGGCGTGGGGGTAGGGGAAGGTCGGGGTGGCCG
TGCTGTGTGGTGGTATATACAACTTGCTCGAAACGATGAAGACGTTGAGA
TGGCCCTTTTGCTGAATTATGATCAATCAATCGTGGACTCTTGTCTGAAA
GCGCACGGAGCATACGTATTACAACCCGCCGTTGTTATTCTCGTGCTTTC
AATCGCTTCAGATGTTTTCCCATTGCACCATGTCAAAAGTGGAGTCACCT
GCGCCCGGAGGTTCGTCTACATCCTGCAGCAGCAGTAGCTAGCCTGCTTT
TCGCGGTGACTCCGACCGGCAGGTGATGGCATCGGGGGAAGGAAGCGACA
TGCATACTGTACGGCTCAGCACCATCCATCTGTCTTATCTCCGGTCAGGT
TCAACCCAGGGTAGGACGCCCTCCCTGACCTACCACGGAACTGGTGTTCA
GTAGTAATAGGTTGGTGTAGGCGTGTTGAGGCCCAGGGGTGACGGGTCGG
TAAGTATGCTGACGCTGCTTGCGGAGGGGGCGCTTTTCTGCGTCCTGCCT
TAGTTGTGTTGGTCACTCGTTTTGAGATTATCAATGTAGTCTATTTTGCT
GATTGTTTCCACGGCCTGCATTCGGTAGTCATTGGCACAAAGTACAGGAC
TTACACAATGTGTTCGTTCGTGGTTTTGTTTCCAGTTCATCTTGGAGAGT
ATTTAGTACTATGACAGAGGTTAATACTCTGCTGCTGGCCGGGAGGGTCG
AGCGAGGTGTTGAAGGGCTGCCAGCGTTTACTTTTTGCGACGTGGTTTCG
GTCGTCGTGTGAAAGTACTGCGAGCATTTTCGCGACAGACTGCAGTGTAC
GAAGTAGTACATCTTAGCACGATCTACCGTCCGACATGGATGGGGGTGTG
CCTGCTACGGGTGTGAGTTGGATGATGATGCTTGCCGAAACCAAAAAGAT
CGAT

Coding sequence (CDS) from alignment at Scaffold_550:57010..61213-

>EsuBft1053_5a-0001 ID=EsuBft1053_5a-0001|Name=EsuBft1053_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=216bp|location=Sequence derived from alignment at Scaffold_550:57010..61213- (Ectocarpus subulatus male Bft15b)
ATGCACCTCCGCGGCCGTAACCAAACCCCCCTTTTGAAATCGGTGCCCAC
CGAAACCGAACACGACCAAACGAACACGACCAAAACGTGTCCCAGATTCA
CACGGTCTGACGAGACCCGGTTGTGGAATAACACGGGTGGCGCCGCGGAT
TCACCCCCCTACGTGGAGGATTCGTGCTTCACCGCAGACTCGGGGCTGTC
CCCTGAGTGCACATAA