EsuBft1053_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1053_4a-0001
Unique NameEsuBft1053_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_550contigScaffold_550:64105..65385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog13735.ENSPSIP00000000205
ProteomeIdEsuBft1053_4
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl33208|Metazoa
Length123
Evalue2.8e-13
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria,48HSD@7711|Chordata,49FJM@7742|Vertebrata
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1053_4aEsuBft1053_4aEctocarpus subulatus male Bft15bgeneScaffold_550 64105..65385 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1053_4a-0001-exonagat-exon-21078Ectocarpus subulatus male Bft15bexonScaffold_550 64105..64290 -
EsuBft1053_4a-0001-exonEsuBft1053_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_550 64334..65385 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1053_4a-0001-cdsEsuBft1053_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_550 64105..64290 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1053_4a-0001-exonagat-five_prime_utr-324Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_550 65297..65385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1053_4a-0001EsuBft1053_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_550 64105..65296 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1053_4a-0001 ID=EsuBft1053_4a-0001|Name=EsuBft1053_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1238bp|location=Sequence derived from alignment at Scaffold_550:64105..65385- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCTTGACCGAGTTCGGAGGGCAGGATGGGGGATGCTGTATGC
CGATGATGCCGGCGTCGTATCGAGGTCTGCAGAAGGACTGGCGAGAATGA
TGACCATCATCGTTAAGGTGTTCGGGGAGTTCGGGCTAACGGTGTCGGAG
AAGCAAACGGAGACGCTCCTAATGCGCGCGAAGGACAAGGCGACTACAAC
ATCACAGCCCGCTCCGCCTCCACCGCGGACCATCGAAGCCGCGGGACCGA
AAAACACCCAGACGACCGAGTTCCGGTACCTCGCTGGCCTCTTCAACGAA
CATGGCGACCTCACCCGGGAGATCAACTACAGGAGCAGAGGAGCGTGGGC
GTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACAGACCGAAAGCTCCAT
TCCGACTCAAGATCCACCTGCTCCAGACGGAGGCGATGGAGGCACTGCTG
TATGGCTGCATGACATGGTCACCACTCAGCGGCCACTATCAGACGCTGCG
GTCGATACACCACCGACTGCTCCTTCGAGTTACCGGGTACAAGCGCAAGA
AAGACACCTTCCGGCAGCTCTCTTTCGCCCAGACGCTGAAGCGGGTCGAA
TGCCAGAGCGTTGAAGTCACGCTCCGACAACGACGCCTACTGTTCGCGGG
AGCGTTGGCAAGGCAGCCGGACGGGCGACTCCCGAAACGACTGATGCTCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGAAGCGACGTAGGG
GGAGACAGGAACAGAACTGGCCAAAGTGTGTGCTCGACGACCTGAGGGCA
TTCGGGGCCGACCACGGATCTACGAAAGCCGATCCATGTTGTTTCGGAAT
CCCGGTACCGAAAGACACGGCACCGACGTTAAAGTGGACGGAAGCCGCGA
AGGGAGCTGAGAGGTTCATGACCTCCTGGCACGAGAAGGAAGAAGAGGCC
AGCCGACAACGGGCGCTCAAACGAAACCACAAGCCACCAACCAATGGGGC
GGGAGGGGGGCAGGAGACGGACGAGACGGGGAGGGAAGAAAGTAAACGAG
AAGAGACGGACCGAGTGGCACGATACGTGCCGGATTGA
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protein sequence of EsuBft1053_4a-0001

>EsuBft1053_4 ID=EsuBft1053_4|Name=EsuBft1053_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=382bp
MLYADDAGVVSRSAEGLARMMTIIVKVFGEFGLTVSEKQTETLLMRAKDK
ATTTSQPAPPPPRTIEAAGPKNTQTTEFRYLAGLFNEHGDLTREINYRSR
GAWACLRRYGRELFDRPKAPFRLKIHLLQTEAMEALLYGCMTWSPLSGHY
QTLRSIHHRLLLRVTGYKRKKDTFRQLSFAQTLKRVECQSVEVTLRQRRL
LFAGALARQPDGRLPKRLMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXEKRRRGRQEQNWPKCVLDDLRAFGADHGSTKADPC
CFGIPVPKDTAPTLKWTEAAKGAERFMTSWHEKEEEASRQRALKRNHKPP
TNGAGGGQETDETGREESKREETDRVARYVPD
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mRNA from alignment at Scaffold_550:64105..65385-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1053_4a-0001 ID=EsuBft1053_4a-0001|Name=EsuBft1053_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1281bp|location=Sequence derived from alignment at Scaffold_550:64105..65385- (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCTTGACCGAGTTCGGAGGGCAGGATGGGGGATGCTGTATGC
CGATGATGCCGGCGTCGTATCGAGGTCTGCAGAAGGACTGGCGAGAATGA
TGACCATCATCGTTAAGGTGTTCGGGGAGTTCGGGCTAACGGTGTCGGAG
AAGCAAACGGAGACGCTCCTAATGCGCGCGAAGGACAAGGCGACTACAAC
ATCACAGCCCGCTCCGCCTCCACCGCGGACCATCGAAGCCGCGGGACCGA
AAAACACCCAGACGACCGAGTTCCGGTACCTCGCTGGCCTCTTCAACGAA
CATGGCGACCTCACCCGGGAGATCAACTACAGGAGCAGAGGAGCGTGGGC
GTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACAGACCGAAAGCTCCAT
TCCGACTCAAGATCCACCTGCTCCAGACGGAGGCGATGGAGGCACTGCTG
TATGGCTGCATGACATGGTCACCACTCAGCGGCCACTATCAGACGCTGCG
GTCGATACACCACCGACTGCTCCTTCGAGTTACCGGGTACAAGCGCAAGA
AAGACACCTTCCGGCAGCTCTCTTTCGCCCAGACGCTGAAGCGGGTCGAA
TGCCAGAGCGTTGAAGTCACGCTCCGACAACGACGCCTACTGTTCGCGGG
AGCGTTGGCAAGGCAGCCGGACGGGCGACTCCCGAAACGACTGATGCTCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGAAGCGACGTAGGG
GGAGACAGGAACAGAACTGGCCAAAGTGTGTGCTCGACGACCTGAGGGCA
TTCGGGGCCGACCACGGATCTACGAAAGCCGATCCATGTTGTTTCGGAAT
CCCGGTACCGAAAGACACGGCACCGACGTTAAAGTGGACGGAAGCCGCGA
AGGTGAATGGGGGAGTACCCTGGCATGCTTGCAGCGGTGCTGCAGGGAGC
TGAGAGGTTCATGACCTCCTGGCACGAGAAGGAAGAAGAGGCCAGCCGAC
AACGGGCGCTCAAACGAAACCACAAGCCACCAACCAATGGGGCGGGAGGG
GGGCAGGAGACGGACGAGACGGGGAGGGAAGAAAGTAAACGAGAAGAGAC
GGACCGAGTGGCACGATACGTGCCGGATTGA
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Coding sequence (CDS) from alignment at Scaffold_550:64105..65385-

>EsuBft1053_4a-0001 ID=EsuBft1053_4a-0001|Name=EsuBft1053_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1149bp|location=Sequence derived from alignment at Scaffold_550:64105..65385- (Ectocarpus subulatus male Bft15b)
ATGCTGTATGCCGATGATGCCGGCGTCGTATCGAGGTCTGCAGAAGGACT
GGCGAGAATGATGACCATCATCGTTAAGGTGTTCGGGGAGTTCGGGCTAA
CGGTGTCGGAGAAGCAAACGGAGACGCTCCTAATGCGCGCGAAGGACAAG
GCGACTACAACATCACAGCCCGCTCCGCCTCCACCGCGGACCATCGAAGC
CGCGGGACCGAAAAACACCCAGACGACCGAGTTCCGGTACCTCGCTGGCC
TCTTCAACGAACATGGCGACCTCACCCGGGAGATCAACTACAGGAGCAGA
GGAGCGTGGGCGTGCCTCAGGCGATATGGCCGGGAGCTCTTCGACAGACC
GAAAGCTCCATTCCGACTCAAGATCCACCTGCTCCAGACGGAGGCGATGG
AGGCACTGCTGTATGGCTGCATGACATGGTCACCACTCAGCGGCCACTAT
CAGACGCTGCGGTCGATACACCACCGACTGCTCCTTCGAGTTACCGGGTA
CAAGCGCAAGAAAGACACCTTCCGGCAGCTCTCTTTCGCCCAGACGCTGA
AGCGGGTCGAATGCCAGAGCGTTGAAGTCACGCTCCGACAACGACGCCTA
CTGTTCGCGGGAGCGTTGGCAAGGCAGCCGGACGGGCGACTCCCGAAACG
ACTGATGCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGAA
GCGACGTAGGGGGAGACAGGAACAGAACTGGCCAAAGTGTGTGCTCGACG
ACCTGAGGGCATTCGGGGCCGACCACGGATCTACGAAAGCCGATCCATGT
TGTTTCGGAATCCCGGTACCGAAAGACACGGCACCGACGTTAAAGTGGAC
GGAAGCCGCGAAGGGAGCTGAGAGGTTCATGACCTCCTGGCACGAGAAGG
AAGAAGAGGCCAGCCGACAACGGGCGCTCAAACGAAACCACAAGCCACCA
ACCAATGGGGCGGGAGGGGGGCAGGAGACGGACGAGACGGGGAGGGAAGA
AAGTAAACGAGAAGAGACGGACCGAGTGGCACGATACGTGCCGGATTGA
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