EsuBft1052_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1052_9a-0001
Unique Name	EsuBft1052_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_352	contig	Scaffold_352:446680..448163 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1052_9
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	148
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_9a	EsuBft1052_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_352 446680..448163 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_9a-0001-exon	EsuBft1052_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_352 446680..448163 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_9a-0001-exon	agat-three_prime_utr-516	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_352 446680..448013 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_9a-0001-cds	EsuBft1052_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_352 448014..448163 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_9a-0001	EsuBft1052_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_352 448014..448163 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_352:446680..448163-
coding sequence from alignment at Scaffold_352:446680..448163-

spliced messenger RNA

>EsuBft1052_9a-0001 ID=EsuBft1052_9a-0001|Name=EsuBft1052_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1484bp|location=Sequence derived from alignment at Scaffold_352:446680..448163- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTGCGGCAACTACCGGGGCATCTCTCTCGTCGCACACGCCGGTAA
GGTGCTGCTTAAGGTCGTCGCTACACGACTGGGCCACTACTGCGAGCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
GAAGCAGAGAGTACGGCCATCTCAGGACCGAAGAGAAAGAGAGCCGGGGA
AGCGGCGGTGGGGGGGAAGAAACGGCGACCGGGCACTGCTGTAGAAGCGA
GTAGGGCGGCCGAGGTAGCACTTGCGGCGAACGTTTTACCCGGCTGATGT
TGTTGCGCCCTGTTTCCTTCCCTGCTGTATGCAATACTCCTTTATGTATG
TCCTTTGTATTGCCTTCGGCCTCTGTGCTGTGTT

protein sequence of EsuBft1052_9a-0001

>EsuBft1052_9 ID=EsuBft1052_9|Name=EsuBft1052_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MECGNYRGISLVAHAGKVLLKVVATRLGHYCEXXXXXXXXXXXXXXXXXX

mRNA from alignment at Scaffold_352:446680..448163-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1052_9a-0001 ID=EsuBft1052_9a-0001|Name=EsuBft1052_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1484bp|location=Sequence derived from alignment at Scaffold_352:446680..448163- (Ectocarpus subulatus male Bft15b)
ATGGAGTGCGGCAACTACCGGGGCATCTCTCTCGTCGCACACGCCGGTAA
GGTGCTGCTTAAGGTCGTCGCTACACGACTGGGCCACTACTGCGAGCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
GAAGCAGAGAGTACGGCCATCTCAGGACCGAAGAGAAAGAGAGCCGGGGA
AGCGGCGGTGGGGGGGAAGAAACGGCGACCGGGCACTGCTGTAGAAGCGA
GTAGGGCGGCCGAGGTAGCACTTGCGGCGAACGTTTTACCCGGCTGATGT
TGTTGCGCCCTGTTTCCTTCCCTGCTGTATGCAATACTCCTTTATGTATG
TCCTTTGTATTGCCTTCGGCCTCTGTGCTGTGTT

Coding sequence (CDS) from alignment at Scaffold_352:446680..448163-

>EsuBft1052_9a-0001 ID=EsuBft1052_9a-0001|Name=EsuBft1052_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_352:446680..448163- (Ectocarpus subulatus male Bft15b)
ATGGAGTGCGGCAACTACCGGGGCATCTCTCTCGTCGCACACGCCGGTAA
GGTGCTGCTTAAGGTCGTCGCTACACGACTGGGCCACTACTGCGAGCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN