EsuBft1052_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1052_7a-0001
Unique Name	EsuBft1052_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_352	contig	Scaffold_352:415950..418830 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1052_7
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	TRANSMEMBRANE
Protein domains	NON_CYTOPLASMIC_DOMAIN
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	250
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_7a	EsuBft1052_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_352 415950..418830 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_7a-0001-exon	agat-exon-109347	Ectocarpus subulatus male Bft15b	exon	Scaffold_352 415950..416428 +
EsuBft1052_7a-0001-exon	EsuBft1052_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_352 416808..418830 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_7a-0001-exon	agat-five_prime_utr-320	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_352 415950..416055 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_7a-0001-cds	EsuBft1052_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_352 416056..416428 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_7a-0001-exon	agat-three_prime_utr-515	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_352 417134..418830 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_7a-0001	EsuBft1052_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_352 416056..417133 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_352:415950..418830+
coding sequence from alignment at Scaffold_352:415950..418830+

spliced messenger RNA

>EsuBft1052_7a-0001 ID=EsuBft1052_7a-0001|Name=EsuBft1052_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2502bp|location=Sequence derived from alignment at Scaffold_352:415950..418830+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCTCTCGCCCCACTTCTCTCTCTGCTCCCCGAATGGCTGGTGGTTTCCT
CTGCAGCCGCAGCCCGCGTGAAAAACTTCTAGCGAAGGAGCTGCTTTGAA
GGCTGAATGGATCCAGAAGCCGGTACATGGCTTGCCAGACAGCGCCTGCG
GAGTGTATTGCCCAAGCGCCCAGCGGCAACGGACACCAGTTTAATCTTGA
AACAGAAGGGCCTGCTGTGCCACCAAGCCCGCGCCGCGATGCCGTTGTGC
GGTGAAATGTGTCTAGGAGGGAATACTCGGCGTGTCAGTGCCGACAATAT
GAGGTGCGAGCAGCAGGGCTACGTGGAGCGAGCCTCGCACGGCGATTGCT
GCAGGAGTTCAAAAGGCAGAGTTCTGAGCAGAGCACTGCTGACAGAGAGG
CAAGAAAGGTGGTGGCTTCTGCAGGCGACAAAGAGGTGCGACGGACACCA
GAACTGCCACCCAAGTGGCGAGAAAGCAGCCTGGGAGCTCGGGGAGTGGG
AATCGGGTCTGAATGAGCGCCACGGCAGTACGCCAGACCTCCTCTGCCAA
AGGAGAGCCGGTGGAGATGTGGGTGCACAAAGCGTGACGTTAGCCCTCGC
CTCTGGCTGTTTTTTTTTTTTTTTCTTTTGTCTCTCATCATTGGACTCTG
TCGTCTGCCCCTCTGGCCCCTATCCTCCACTTCTACCAGCTAGACGACCC
AACCGGGATCACATAGGAGGGGGGGGTTGGACCCCCTCCTGCGGTTCTGT
ATGTTGGCGTGGCAACTTGCCTTCCTGGCCCGGAGAGAGGGAGCTGTACA
AGTAGACGACACGCGTTAGAAGAAGTCGAACCAACGTGTGCGTGTCGACG
TCACCACCACTCTACCCTCCTGCTCAGGCAGGACAGTGTTTGGTGAAGGA
CGACTACTGGTTTGCCGCCGACCCTCGTAAGTCATGTTGTGTGTTGTGTG
TCGTCTTTATTTCTCTTGTGTTCTATGTAGGCGCCGGCTTTGTACGAGTT
CCCAGGTTATTGAAGTATGCGTTGCATCCTTGAGCCCTTCAGCCAGGTTG
GGCGCCTTACAACAGATGCTGTCGTCCTTCACGCAACAAGAAACGTTCTT
CCTTGTTGTGTGTTGCTGTTCTCTCTCTCTAGCTTTAAGTATGTTTGGGG
TCTCGCGTTGTCCCCAACGAGTGCCTACTGTATCTCGCCGGGTCGGACCG
GAGAGAGCGCAAGCCCGCAAGGTATTGGTCCCCTAGTCCGTTATTGCCAC
AACTATCGGGTCATGGGCTTACACACGCGCGACCGCGTTCTTGAAGGATA
CCGTGTAGCTGAAGCCGAAAGTTTCCCTCGCTGCACCAGAAGGGCATCGA
TTGGTTTACAACTCGTTCCGACCCCATGCCTTTTGAGTCCTCCAAACGAC
GGCCCTTCGTTACCGAGCTCGCCATCGTTCGACGTCTCGCACCTTGTTGC
CACTTTTCTGCGCTATTGGCTGGCACTTCTTCGGCAGGTGGGGTCCTCTC
GTCTGCAGCAAAGCACAGCATAGTGTAAGGCCATCAAGCAACACTACAGG
GCATGCCGTGAAACATTTGCTCAACACATCCGTCGAGCGAGCGACCAAAG
TGGTATTCTTTGCAGTGTGGTACACGGCTTCTCTTGTGTTCTGCTTTCTC
CGTCCGTGAAGGCGGCGCGATTCTAGTAGGTCGAAGACTTACCTGTTTGG
TGGTGATCTGACTGCTGTGACCCATGGTGACGATCGCCAATGGTATGTTG
GCGGAGGCGTTGGGACGTATTCGGCAGTACATAGCAAACTTCACCGCGTG
CGTTGACAAGTGATGTTGGTGAAGAGATTGCCGCGTACTGATGACCGTCG
TCGAAGCGAGGGACCAGGCACTAAGGCTGAAAGGCATTGCGCAAGTCTTA
GCCACGAGGAATAAGCATTGGGTGTTCGGCAAGGACGTTTATAGCATGAC
GCCTTCGGGAATACAACGGCGTGCTCGCTTGTGAGTAGAACAACGAATCC
TCGCCATATCCCGTTCGATCTCCGATTGATGTGCTGGACGTTCGCTGTCC
CTGAAGAAGAACGGGCTTTGGCAAACGGGTGTCCCTGCTGGGTGCGCGGG
CATGTTGGTCACGGGTCATCCGGATTGATTATTACCAATGTAGCCTGACG
TGTGCGATGCATTCTGCACCGACGCGCATAATAGTTTGCGTGTGTCAGGC
TCACCGAGATAGTCGACGCGGCCGCTCAGTTCGAGCCCGTGGCATTGCGG
GCGGGCCTGCCTTCCACCTCTATGACCTTCGTGAAAACAATGTTCTACGT
TCATGGGATACATGGTCACACGCGCCAACTGGTAGTGTTCGTACTGCTCC
TGGAGGTACGGAGCTCCGGCGTGTGTAGGTCGTATTGTGGGGTTCGCTTT
TAGGGGCTGGTTTGGCGACGTCTGCAACGGTTGTTGAGAGAGTGACGATG
ATTCACAAAGAAACGAACGTATGCTTTGTGGAGGAGAGGAGTAAAACCTC
TT

protein sequence of EsuBft1052_7a-0001

>EsuBft1052_7 ID=EsuBft1052_7|Name=EsuBft1052_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=232bp
MDPEAGTWLARQRLRSVLPKRPAATDTSLILKQKGLLCHQARAAMPLCGE
MCLGGNTRRVSADNMRCEQQGYVERASHGDCCRSSKGRVLSRALLTERQE
RWWLLQATKRCDGHQNCHPSGEKAAWELGEWESGLNERHGSTPDLLCQRR
AGGDVGAQSVTLALASGCFFFFFFCLSSLDSVVCPSGPYPPLLPARRPNR
DHIGGGGWTPSCGSVCWRGNLPSWPGERELYK

mRNA from alignment at Scaffold_352:415950..418830+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1052_7a-0001 ID=EsuBft1052_7a-0001|Name=EsuBft1052_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2881bp|location=Sequence derived from alignment at Scaffold_352:415950..418830+ (Ectocarpus subulatus male Bft15b)
GCCTCTCGCCCCACTTCTCTCTCTGCTCCCCGAATGGCTGGTGGTTTCCT
CTGCAGCCGCAGCCCGCGTGAAAAACTTCTAGCGAAGGAGCTGCTTTGAA
GGCTGAATGGATCCAGAAGCCGGTACATGGCTTGCCAGACAGCGCCTGCG
GAGTGTATTGCCCAAGCGCCCAGCGGCAACGGACACCAGTTTAATCTTGA
AACAGAAGGGCCTGCTGTGCCACCAAGCCCGCGCCGCGATGCCGTTGTGC
GGTGAAATGTGTCTAGGAGGGAATACTCGGCGTGTCAGTGCCGACAATAT
GAGGTGCGAGCAGCAGGGCTACGTGGAGCGAGCCTCGCACGGCGATTGCT
GCAGGAGTTCAAAAGGCAGAGTTCTGAGCAGAGCACTGCTGACAGAGAGG
CAAGAAAGGTGGTGGCTTCTGCAGGCGACAAAGAGGTGCGACGGACACCA
GAACTGCCACCCAAGTGGCGAGAAAGCAGGTATAACAATGGAAGAATTCT
GCTCACGGCAAGACAAGGAAGGGCTGAGTGGTCGGTCGATGTCCTCAACG
TAGAGGTGGCTCTCACCAAGAGATCAAAAGGTTGGTATGCACAGCAGCGT
TCTGATTTTGGGTCGGCAGAGGGACAGCAATATCGCGAACTGTCCGCCAG
CACGCCCAGAGGCTGGTGGCGATGCACACGACGTCGGGCCATGGATCCCA
TGAAGGCCTGGTGGTCTTCGGGCAAGAGCATCCTGATATTTTTACCAGCG
CTCCCGAATGAGGCGATACTGGTACATATTGGCGACCTCCGCATCTTTGT
TGGTTGCATTTATCTCTTTGTTGGTTACATGTGTCGCGGGGGGTTGTCTC
TCCAACAGCCTGGGAGCTCGGGGAGTGGGAATCGGGTCTGAATGAGCGCC
ACGGCAGTACGCCAGACCTCCTCTGCCAAAGGAGAGCCGGTGGAGATGTG
GGTGCACAAAGCGTGACGTTAGCCCTCGCCTCTGGCTGTTTTTTTTTTTT
TTTCTTTTGTCTCTCATCATTGGACTCTGTCGTCTGCCCCTCTGGCCCCT
ATCCTCCACTTCTACCAGCTAGACGACCCAACCGGGATCACATAGGAGGG
GGGGGTTGGACCCCCTCCTGCGGTTCTGTATGTTGGCGTGGCAACTTGCC
TTCCTGGCCCGGAGAGAGGGAGCTGTACAAGTAGACGACACGCGTTAGAA
GAAGTCGAACCAACGTGTGCGTGTCGACGTCACCACCACTCTACCCTCCT
GCTCAGGCAGGACAGTGTTTGGTGAAGGACGACTACTGGTTTGCCGCCGA
CCCTCGTAAGTCATGTTGTGTGTTGTGTGTCGTCTTTATTTCTCTTGTGT
TCTATGTAGGCGCCGGCTTTGTACGAGTTCCCAGGTTATTGAAGTATGCG
TTGCATCCTTGAGCCCTTCAGCCAGGTTGGGCGCCTTACAACAGATGCTG
TCGTCCTTCACGCAACAAGAAACGTTCTTCCTTGTTGTGTGTTGCTGTTC
TCTCTCTCTAGCTTTAAGTATGTTTGGGGTCTCGCGTTGTCCCCAACGAG
TGCCTACTGTATCTCGCCGGGTCGGACCGGAGAGAGCGCAAGCCCGCAAG
GTATTGGTCCCCTAGTCCGTTATTGCCACAACTATCGGGTCATGGGCTTA
CACACGCGCGACCGCGTTCTTGAAGGATACCGTGTAGCTGAAGCCGAAAG
TTTCCCTCGCTGCACCAGAAGGGCATCGATTGGTTTACAACTCGTTCCGA
CCCCATGCCTTTTGAGTCCTCCAAACGACGGCCCTTCGTTACCGAGCTCG
CCATCGTTCGACGTCTCGCACCTTGTTGCCACTTTTCTGCGCTATTGGCT
GGCACTTCTTCGGCAGGTGGGGTCCTCTCGTCTGCAGCAAAGCACAGCAT
AGTGTAAGGCCATCAAGCAACACTACAGGGCATGCCGTGAAACATTTGCT
CAACACATCCGTCGAGCGAGCGACCAAAGTGGTATTCTTTGCAGTGTGGT
ACACGGCTTCTCTTGTGTTCTGCTTTCTCCGTCCGTGAAGGCGGCGCGAT
TCTAGTAGGTCGAAGACTTACCTGTTTGGTGGTGATCTGACTGCTGTGAC
CCATGGTGACGATCGCCAATGGTATGTTGGCGGAGGCGTTGGGACGTATT
CGGCAGTACATAGCAAACTTCACCGCGTGCGTTGACAAGTGATGTTGGTG
AAGAGATTGCCGCGTACTGATGACCGTCGTCGAAGCGAGGGACCAGGCAC
TAAGGCTGAAAGGCATTGCGCAAGTCTTAGCCACGAGGAATAAGCATTGG
GTGTTCGGCAAGGACGTTTATAGCATGACGCCTTCGGGAATACAACGGCG
TGCTCGCTTGTGAGTAGAACAACGAATCCTCGCCATATCCCGTTCGATCT
CCGATTGATGTGCTGGACGTTCGCTGTCCCTGAAGAAGAACGGGCTTTGG
CAAACGGGTGTCCCTGCTGGGTGCGCGGGCATGTTGGTCACGGGTCATCC
GGATTGATTATTACCAATGTAGCCTGACGTGTGCGATGCATTCTGCACCG
ACGCGCATAATAGTTTGCGTGTGTCAGGCTCACCGAGATAGTCGACGCGG
CCGCTCAGTTCGAGCCCGTGGCATTGCGGGCGGGCCTGCCTTCCACCTCT
ATGACCTTCGTGAAAACAATGTTCTACGTTCATGGGATACATGGTCACAC
GCGCCAACTGGTAGTGTTCGTACTGCTCCTGGAGGTACGGAGCTCCGGCG
TGTGTAGGTCGTATTGTGGGGTTCGCTTTTAGGGGCTGGTTTGGCGACGT
CTGCAACGGTTGTTGAGAGAGTGACGATGATTCACAAAGAAACGAACGTA
TGCTTTGTGGAGGAGAGGAGTAAAACCTCTT

Coding sequence (CDS) from alignment at Scaffold_352:415950..418830+

>EsuBft1052_7a-0001 ID=EsuBft1052_7a-0001|Name=EsuBft1052_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=699bp|location=Sequence derived from alignment at Scaffold_352:415950..418830+ (Ectocarpus subulatus male Bft15b)
ATGGATCCAGAAGCCGGTACATGGCTTGCCAGACAGCGCCTGCGGAGTGT
ATTGCCCAAGCGCCCAGCGGCAACGGACACCAGTTTAATCTTGAAACAGA
AGGGCCTGCTGTGCCACCAAGCCCGCGCCGCGATGCCGTTGTGCGGTGAA
ATGTGTCTAGGAGGGAATACTCGGCGTGTCAGTGCCGACAATATGAGGTG
CGAGCAGCAGGGCTACGTGGAGCGAGCCTCGCACGGCGATTGCTGCAGGA
GTTCAAAAGGCAGAGTTCTGAGCAGAGCACTGCTGACAGAGAGGCAAGAA
AGGTGGTGGCTTCTGCAGGCGACAAAGAGGTGCGACGGACACCAGAACTG
CCACCCAAGTGGCGAGAAAGCAGCCTGGGAGCTCGGGGAGTGGGAATCGG
GTCTGAATGAGCGCCACGGCAGTACGCCAGACCTCCTCTGCCAAAGGAGA
GCCGGTGGAGATGTGGGTGCACAAAGCGTGACGTTAGCCCTCGCCTCTGG
CTGTTTTTTTTTTTTTTTCTTTTGTCTCTCATCATTGGACTCTGTCGTCT
GCCCCTCTGGCCCCTATCCTCCACTTCTACCAGCTAGACGACCCAACCGG
GATCACATAGGAGGGGGGGGTTGGACCCCCTCCTGCGGTTCTGTATGTTG
GCGTGGCAACTTGCCTTCCTGGCCCGGAGAGAGGGAGCTGTACAAGTAG