EsuBft1052_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1052_5a-0001
Unique NameEsuBft1052_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_352contigScaffold_352:397081..401499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1052_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length191
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1052_5aEsuBft1052_5aEctocarpus subulatus male Bft15bgeneScaffold_352 397081..401499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1052_5a-0001EsuBft1052_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_352 400522..401499 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1052_5a-0001-exonagat-exon-109336Ectocarpus subulatus male Bft15bexonScaffold_352 397081..398080 -
EsuBft1052_5a-0001-exonagat-exon-109333Ectocarpus subulatus male Bft15bexonScaffold_352 398498..398619 -
EsuBft1052_5a-0001-exonagat-exon-109335Ectocarpus subulatus male Bft15bexonScaffold_352 399000..399153 -
EsuBft1052_5a-0001-exonEsuBft1052_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_352 400100..400650 -
EsuBft1052_5a-0001-exonagat-exon-109334Ectocarpus subulatus male Bft15bexonScaffold_352 401410..401499 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1052_5a-0001-exonagat-three_prime_utr-511Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_352 397081..398080 -
EsuBft1052_5a-0001-exonagat-three_prime_utr-512Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_352 398498..398619 -
EsuBft1052_5a-0001-exonagat-three_prime_utr-513Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_352 399000..399153 -
EsuBft1052_5a-0001-exonagat-three_prime_utr-514Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_352 400100..400521 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1052_5a-0001-cdsEsuBft1052_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_352 400522..400650 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1052_5a-0001 ID=EsuBft1052_5a-0001|Name=EsuBft1052_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1917bp|location=Sequence derived from alignment at Scaffold_352:397081..401499- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATAGAAGGATCGTCTCTCTTCTCTTGCCACCAAACAACCTGCTGGC
ACCACCGCAACAGACTAAACATATCATAGTGCGCCCCCTGGATCAAGACC
AAGAAGAGAGGAATGACATGTCAGTACGAACCGCCGGCGAGCGCATCAGG
AGACAGGCACACCGGATGCACACGCTCTCGCTCACTCGGCCATGGCATTT
GGAGCCATGGGCCCGCTAATGGAACAGGGTAGAGTGACAAATGGCTCATC
ATCTTTCTGACTGTCGGTATGGTAGTGCTCTGTTGATGTCCACTTCTGCG
TGCGGAATGTGCCTGATGCGGCTGTCAGCTCTTCTGCATCCTCGGTCGTG
GCACTTGGTTGGGGTGAACCAGAAATCCATCCATACAACTCCGGGGACAA
ACGTTTCGTGTCCCCTGCGGTGGACTACATACACACCGATGGCAAGGCAG
CGCTACGACTTACTGCTGCTGTTGCGCCAATGGGGGACGCCGACCGCAAG
ATTCCGGCCGTGAAACTGTTCGTCTCTCAGCTGAATAACGCCCGCCAGCC
CGTCGAAGCCGCTAGTCTGAACGGTCTGGAAGAGAGCAACCTCGTGGGGC
TAGTCCTCATGGGCGTTGAGTTTACTCGGGTGTGGGTTCAGGGCATTGTG
ATCGAGGTGAATCCTGCCGAGCGCAGCTTCATCGTTGACGATAACACGGG
CACAGTTGCAGCCGTTGTGCCCGGAGTCGGACTCGACGGCGGCTCCAACG
AAGCAGGGCATGGTTTTGGTGATGCTGACGGCTTGCCCAAGAAAGGCCAG
TACGTCCTAATGGTTGGAGCGGTGGAGGCTCCGTGCGATAATAATGGGCA
AGGTTGGCGGGTGCAGCGAAGAAGAAGCTCGTGCAGGCGATATCGTGTGC
TTTGTGACGTTGTCAAGGATGTGGGCCCCGAAAGCCCGAACAGGGATGCA
TTGTGGGGTCTAGAGGTCATAGATTTTTGGATGAGTCGACCGCGAAATAC
TCAGGGCTAATCGGACGAGCCAGGCCAGCTTGTAAGTAGAATTCGACGGA
CCTTTGAGTACCTACGGTCAGGTCGTTCATGAACGCAGTGTCTGTTTGTC
TTTGTTGAGTTGTACTGTCCTCTTGTTGAGGAATTTGATGCGTTTGGGCC
TAGGGTCTTCGTGCAAGCATTTGTGTATTTCACCGCGATACTGCCGTGTT
GCTGAGTACCTTGCTTCCTTCAGGGACCTCCAGCTTATGCAGGGCGCGCG
TACCTTAGCTGCTCACAGAGCAACGTTTGTGTCTCATTCGCTAGCTAGCC
TAGGTGACGCCAGCCCTACCCCTTCGACAACAGACACCAGGAGGGACAGG
TTACGGGGGTAGCAGGCGGTAGAAGTCGTTGGGGCGGAAGGCTGTGTATA
TTTTGTCCCGTCCATGGGACGGGCAGGCCGGGTAGCTTCTTAGGGTCGGT
GGTATTTACGATGCGAGAGCGCTACAATGTAGATATATGTCCGTCGGCAA
ATGCATTTTCATTTGCTTTCTCTTGTTTTTGCTGCCCAGGGCACGACTTG
TTGTGGAATGCAGCTGTCCCAACGGCCAACCAACGAGTATTATTGGGGTT
TGATTAGCAGTAGAGTGACAACGGCTGATGAAGTGGGACTCGATGATATT
GGCCACAGGGAAGGAGGTGTTCTTGAGGGAGAGACGTGGGCAACGGAGGG
AAATGGTTTCGTATATGTAGGCCCTACAAGACAGCTGGTCCTGTAGATAC
ATCGAAGGCCACAGCTACGTTCGAGGAGCGTTGGAGGATGAATATGATTC
CACACGCACGTGAAGCTGTTCGACAAGTGTGCAGGGCGCATTTGCACTTG
AAGTGACTCTACGACAAAAGTTCATGTTGGCGTCTCGAACGAGATCTGCG
TAGTCGGCGACAACTGA
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protein sequence of EsuBft1052_5a-0001

>EsuBft1052_5 ID=EsuBft1052_5|Name=EsuBft1052_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=72bp
MNRRIVSLLLPPNNLLAPPQQTKHIIVRPLDQDQEERNDMSVRTAGERIR
RQAHRMHTLSLTRPWHLEPWAR
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mRNA from alignment at Scaffold_352:397081..401499-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1052_5a-0001 ID=EsuBft1052_5a-0001|Name=EsuBft1052_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4419bp|location=Sequence derived from alignment at Scaffold_352:397081..401499- (Ectocarpus subulatus male Bft15b)
ATGAATAGAAGGATCGTCTCTCTTCTCTTGCCACCAAACAACCTGCTGGC
ACCACCGCAACAGACTAAACATATCATAGTGCGCCCCCTGGTACGTTGAG
GCCCTAGATACTTGAGCTCTACCGCGGAAGCGCAGAGATGCAGGCAACTG
CGGCGGATGGAAGAGGCAGGCTGCAGGCTGCGTGCCGCGGGAAGCGGAAC
GTTTTCTGCGTTTTTCGTGCCGTATAATTTCGGAATCATGGATTCGGCAA
CGGGAGACGGAGGACTCTCCTCATGTCTCTACGTCACGGTTGTCCATGCG
CCCAAAAGCTCACCTGGGAAAGTTGACGTATTCGTCTTTCGTGCTGAGCT
CTACAAGACGGTCTCCCCCACCCGCAGAAAAATGTCGCACACAGAGCGGC
TTCGACGCCTGTGGCCCCCACTGGCGGCACTGCTGATGGATTGCTCGACC
TGCTGTGCGAAGCATTGTTTTTCGAATCTCCCCCCTCTGGTTGCAGTGCG
AATGCACCAGCCTCTCTCTTGTGCGTTCCTCGCCCTCCGTCTTCTCCTTC
TCTCTCCCGCTCTCGCTGGGACGGGTGTGCCACGTTGGCTGTATCGTATG
CAGCGCGCGGTTCGCTGTGAACGAGGTGGGGGGGGGCCACAGCTGAAAAC
AATGGGTACGTGTAAGAACACGCCGGAAGCGGGACGATTTGAAACATTTG
TTCCGCAGCTCTTGTTCCGCGCCATGGGTGCTGTCTCCTGTTCTCTCTGC
TCTGCCTGCCTCGTGTCATCGCGTCGTATGACCAACAGCCAACTCCGGAA
TTAGATTAGATCTATGGTTTATCCAGACACGGCGGTCGGGCTCACACAGG
ATCAAGACCAAGAAGAGAGGAATGACATGTCAGTACGAACCGCCGGCGAG
CGCATCAGGAGACAGGCACACCGGATGCACACGCTCTCGCTCACTCGGCC
ATGGCATTTGGAGCCATGGGCCCGCTAATGGAACAGGGTAGAGTGACAAA
TGGCTCATCATCTTTCTGACTGTCGGTATGGTAGTGCTCTGTTGATGTCC
ACTTCTGCGTGCGGAATGTGCCTGATGCGGCTGTCAGCTCTTCTGCATCC
TCGGTCGTGGCACTTGGTTGGGGTGAACCAGAAATCCATCCATACAACTC
CGGGGACAAACGTTTCGTGTCCCCTGCGGTGGACTACATACACACCGATG
GCAAGGCAGCGCTACGACTTACTGCTGCTGTTGCGCCAATGGGGGACGCC
GACCGCAAGATTCCGGCCGTGAAACTGTTCGTCTCTCAGCTGAATAACGC
CCGCCAGCCCGTCGAAGCCGCTAGTCTGAACGGTCTGGAAGAGAGCAACC
TCGTGGGGCTAGTCCTCATGGGCGTTGAGTTTACTCGGGTGTGGGTTCAG
GTACGCAGCAGCTGGTGCAGGCTTGCCCCAACGCCAGAGAGTGCAGATGA
CCGTTTCTTTATCACGCGCTCGTGCGTTGGCTATTTCGATGGCCCTCTCA
TCGAAGAACCGTTGCGACCTCTAAGCAATCTGCCTCGATACCGTCACGAG
TGTAGACTAAGTTGTAGCCATTGAAGATTGCGTACGTATTCGGTACCGCC
GTTTAACGGGCAAAACGTGATGAACCCATTAGTTCCCCCGGCAATCACGA
GCTCAATCCAGATCTCAGTCCAGATCTCAATCCAGATCTCAATCCAGATT
CCACCCATACCATTGAAGGTTGGCTTGTCCGCGTGTCACCCACGCAGTGT
TGTGCCCAAACCTTGCGGCGTTGCTCATCAAGCAAGTACAATCACCCCGC
TAACACATTCGGGCACGCCGGCAGAAGCTCACAACGAGGCAACTACTGTG
ATACATGACACGAGGATGGCTGGCAACGTGGAGGTGCAAGAGTCTCATTT
TGAAACTAAATGGCCCAACTTTGAGTGGAGTGCATGCGTGATCGATTTTC
TTCGGTAGTTGTTCCGACGCCAGCGTCTACCGTTGAGACGGTGATGATCG
CCCTGTGCATACGTAGGCCCATCACGGACTTTGTTCATGAAACAGCACGG
CGTGTGTACACCGCAGGGTGTGTTCGCTGCGCACCATCATGCCTGGCCAT
TACGTATATGAGAGCTCACGAATGATATATGCATGCCGGACGACTTCATG
ATGCGTGACTCGAAGTTGAACTTGGCTATAACGTCTATGGGATCGGCAAG
CCAAATAGGTCTTGCTACAAGTCTCCTTTTGGCGCTGTCCCAAGCCTCCG
GCATCCCATGGTTTGCCGGAAGTTGGTGGCAGGTATTCATCCCAGCGATC
ATCCTACAAACCTCCTCACTTCCGCCCATTCCGTGTGCCCCAGCAGGGCA
TTGTGATCGAGGTGAATCCTGCCGAGCGCAGCTTCATCGTTGACGATAAC
ACGGGCACAGTTGCAGCCGTTGTGCCCGGAGTCGGACTCGACGGCGGCTC
CAACGAAGCAGGGCATGGTTTTGGTGATGCTGACGGCTTGCCCAAGAAAG
GTGTGTCGCATGTGCTGTGGACCACCACCGGTATGGTGGAATTTCGAGGT
AGTGCAGCAGCAGGCGCAGTCCGCTCTAAGTACTTGGGTTCTGTGAGCTT
CCGGAACAACAGTTCCATGGGACTCCGCCAGAGGTGGTACATGCTGCCAT
TCTACGAAAAAAGTACAACCATGAATCGGACTTGAGACATTTGGAAGCAA
GCACTTGAGCGATACTTGTGCAACAACAGCGCGACCCCCTAGGGCATTCA
CGTTACTTGCCCTGTAACGATCCGTTGTATCACCACGTTGTGTCTCCTAC
TTGCTACCTGCTTACGCTGCTGCCTCTTTTGTCGCGCTTGTTGGCCGTTC
CAATGGTGGGAATTAACCTTCTTCGGGCAGGCCAGTACGTCCTAATGGTT
GGAGCGGTGGAGGCTCCGTGCGATAATAATGGGCAAGGTTGGCGGGTGCA
GCGAAGAAGAAGCTCGTGCAGGCGATATCGTGTGCTTTGTGACGTTGTCA
AGGTGCGAGCGCCTCGCCCCCGTAGGACGAGGCACCTTTTTGGTAGGGCT
TCCCCGCACCAAGTTTTTTTTTTTTTTCCAACCCTAACATCGTATCTACA
CATCATGTAAGCACGGTGATAGAATATCACCAAGGGTATCAAGGCGTCCT
ACCTCGTGTCTACAACTGGGAAGTATCTAACCAGGGCGTGGGTACGTTTT
CTTCACACCCACGACTTGTGGGACCACACCAGGCTCTGCTCGGACGAATA
CCAGAACTTCCTGCCGCGACTGGCAAATATTCGGCTTTTTTTATCCTTTC
AACGCTGCCTCTTCGCTCAAACGTGCCCATGAACCTGACGAACGCCGTTC
TCGTCCTTCGATTGTTCGCCTTGCGCCGGCCTCGTGTTCGCCGGTCGGTC
TCGCGTCTCGTCGTCTCAGGATGTGGGCCCCGAAAGCCCGAACAGGGATG
CATTGTGGGGTCTAGAGGTCATAGATTTTTGGATGAGTCGACCGCGAAAT
ACTCAGGGCTAATCGGACGAGCCAGGCCAGCTTGTAAGTAGAATTCGACG
GACCTTTGAGTACCTACGGTCAGGTCGTTCATGAACGCAGTGTCTGTTTG
TCTTTGTTGAGTTGTACTGTCCTCTTGTTGAGGAATTTGATGCGTTTGGG
CCTAGGGTCTTCGTGCAAGCATTTGTGTATTTCACCGCGATACTGCCGTG
TTGCTGAGTACCTTGCTTCCTTCAGGGACCTCCAGCTTATGCAGGGCGCG
CGTACCTTAGCTGCTCACAGAGCAACGTTTGTGTCTCATTCGCTAGCTAG
CCTAGGTGACGCCAGCCCTACCCCTTCGACAACAGACACCAGGAGGGACA
GGTTACGGGGGTAGCAGGCGGTAGAAGTCGTTGGGGCGGAAGGCTGTGTA
TATTTTGTCCCGTCCATGGGACGGGCAGGCCGGGTAGCTTCTTAGGGTCG
GTGGTATTTACGATGCGAGAGCGCTACAATGTAGATATATGTCCGTCGGC
AAATGCATTTTCATTTGCTTTCTCTTGTTTTTGCTGCCCAGGGCACGACT
TGTTGTGGAATGCAGCTGTCCCAACGGCCAACCAACGAGTATTATTGGGG
TTTGATTAGCAGTAGAGTGACAACGGCTGATGAAGTGGGACTCGATGATA
TTGGCCACAGGGAAGGAGGTGTTCTTGAGGGAGAGACGTGGGCAACGGAG
GGAAATGGTTTCGTATATGTAGGCCCTACAAGACAGCTGGTCCTGTAGAT
ACATCGAAGGCCACAGCTACGTTCGAGGAGCGTTGGAGGATGAATATGAT
TCCACACGCACGTGAAGCTGTTCGACAAGTGTGCAGGGCGCATTTGCACT
TGAAGTGACTCTACGACAAAAGTTCATGTTGGCGTCTCGAACGAGATCTG
CGTAGTCGGCGACAACTGA
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Coding sequence (CDS) from alignment at Scaffold_352:397081..401499-

>EsuBft1052_5a-0001 ID=EsuBft1052_5a-0001|Name=EsuBft1052_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=219bp|location=Sequence derived from alignment at Scaffold_352:397081..401499- (Ectocarpus subulatus male Bft15b)
ATGAATAGAAGGATCGTCTCTCTTCTCTTGCCACCAAACAACCTGCTGGC
ACCACCGCAACAGACTAAACATATCATAGTGCGCCCCCTGGATCAAGACC
AAGAAGAGAGGAATGACATGTCAGTACGAACCGCCGGCGAGCGCATCAGG
AGACAGGCACACCGGATGCACACGCTCTCGCTCACTCGGCCATGGCATTT
GGAGCCATGGGCCCGCTAA
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