EsuBft1052_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1052_3a-0001
Unique NameEsuBft1052_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_352contigScaffold_352:380657..381811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1052_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length46
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1052_3aEsuBft1052_3aEctocarpus subulatus male Bft15bgeneScaffold_352 380657..381811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1052_3a-0001EsuBft1052_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_352 381546..381779 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1052_3a-0001-exonEsuBft1052_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_352 380657..380806 +
EsuBft1052_3a-0001-exonagat-exon-109324Ectocarpus subulatus male Bft15bexonScaffold_352 381493..381811 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1052_3a-0001-exonagat-five_prime_utr-316Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_352 380657..380806 +
EsuBft1052_3a-0001-exonagat-five_prime_utr-317Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_352 381493..381545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1052_3a-0001-cdsEsuBft1052_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_352 381546..381779 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1052_3a-0001-exonagat-three_prime_utr-510Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_352 381780..381811 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1052_3a-0001 ID=EsuBft1052_3a-0001|Name=EsuBft1052_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=469bp|location=Sequence derived from alignment at Scaffold_352:380657..381811+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCACATGCACACCATATATTCCAGGGCGAGTATGAAGAGGCGGACTCCTT
GTTGTTGCGGGTCCTGGAAATTCTGGGTACAACTGTAGGCAGAGACCACC
CCAGCTATGCTGCAGCGCTTAACAACCGGGCGGAATTGTTGAGACTGCAG
CGAGCTGCTTGACGCAGACTTTGGAGAGCCGCAGTGCTAATACAACTCGT
CATATGCCGGACGATCAGCTCCCTCGACGCCAAGCTGTTCCGTTGGTATA
TAGGGTGACTGAAGGCCCGATCGAACGGTCGCCAGTTGAGCAACCGCCAG
TTAGCGAGGACGGCATCAAGGTAGTCGCTGAGCTGGATCTAGGCGACCGA
TGCCTTTTCAATTTTGCCCAGCCTCGACGGACTTGCGGCGTTCACGGACG
CCTAACGACGTCGGGTTGGACGCCTGCAGCTGGTTAATACCTGCAAGGTG
TCGAGCGTGTGGGTGCCGT
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protein sequence of EsuBft1052_3a-0001

>EsuBft1052_3 ID=EsuBft1052_3|Name=EsuBft1052_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=77bp
MPDDQLPRRQAVPLVYRVTEGPIERSPVEQPPVSEDGIKVVAELDLGDRC
LFNFAQPRRTCGVHGRLTTSGWTPAAG
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mRNA from alignment at Scaffold_352:380657..381811+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1052_3a-0001 ID=EsuBft1052_3a-0001|Name=EsuBft1052_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1155bp|location=Sequence derived from alignment at Scaffold_352:380657..381811+ (Ectocarpus subulatus male Bft15b)
TCACATGCACACCATATATTCCAGGGCGAGTATGAAGAGGCGGACTCCTT
GTTGTTGCGGGTCCTGGAAATTCTGGGTACAACTGTAGGCAGAGACCACC
CCAGCTATGCTGCAGCGCTTAACAACCGGGCGGAATTGTTGAGACTGCAG
GTGAGAGCCACAAGAATTCACCACAACTGTTGTTGCGTTCCACCTCTGGA
TATTGCCGTCCTTGCCGGGTTTTTGAAGAAGGCGGCGAGAGCTACTGGAA
GTTTACACAGATATTTGCAATGTGAAGAGAAATTTTCAGAACGGTTCTGG
AACCATTGTCTTCGAAGGCTTTTCTCTATTAACGGTGTTGCTCAGCAACC
GCACAAGCGGGCGAGAGCCATCACTTGCCTGTTGTTGACTTCCGTGCTGT
ATAACTAGCCGGGGTTTTGAAAGCAAGTTTGAACCATCAATATTTTCTAT
GAGAATGGTTTGTATCGGGGGCTGCTGAAATCGAGTGATTGCGAGGGAAC
ACTCCACGAAACGTCTAGTAAAATATACATGTCTTGTTGGACGATTGAGG
CACTACCGTGGTACGTATGTCGCAATATTGTTTCCCATCCTCATGCCGTT
CGTTCACTACACCATCCATGCATGTCATGCTTTTGCCAATGCTTTCCGCC
GGAAGTCGTTCTTGCTCCTTGGTTGGGGCACTTTATAACTCTTCATTTTC
GTTTCATTCTTGGTTGTGGTGACATCATGGCGTCCATCCGTTCGCTATTC
CCGGTCCAACCTGAGAGCGAGGTCCTGCACGTTGTCGCTTAATCGATTTG
CCTCTCCGCCCCTGTCACGCCCCATTGATACCTCAGCGAGCTGCTTGACG
CAGACTTTGGAGAGCCGCAGTGCTAATACAACTCGTCATATGCCGGACGA
TCAGCTCCCTCGACGCCAAGCTGTTCCGTTGGTATATAGGGTGACTGAAG
GCCCGATCGAACGGTCGCCAGTTGAGCAACCGCCAGTTAGCGAGGACGGC
ATCAAGGTAGTCGCTGAGCTGGATCTAGGCGACCGATGCCTTTTCAATTT
TGCCCAGCCTCGACGGACTTGCGGCGTTCACGGACGCCTAACGACGTCGG
GTTGGACGCCTGCAGCTGGTTAATACCTGCAAGGTGTCGAGCGTGTGGGT
GCCGT
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Coding sequence (CDS) from alignment at Scaffold_352:380657..381811+

>EsuBft1052_3a-0001 ID=EsuBft1052_3a-0001|Name=EsuBft1052_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=234bp|location=Sequence derived from alignment at Scaffold_352:380657..381811+ (Ectocarpus subulatus male Bft15b)
ATGCCGGACGATCAGCTCCCTCGACGCCAAGCTGTTCCGTTGGTATATAG
GGTGACTGAAGGCCCGATCGAACGGTCGCCAGTTGAGCAACCGCCAGTTA
GCGAGGACGGCATCAAGGTAGTCGCTGAGCTGGATCTAGGCGACCGATGC
CTTTTCAATTTTGCCCAGCCTCGACGGACTTGCGGCGTTCACGGACGCCT
AACGACGTCGGGTTGGACGCCTGCAGCTGGTTAA
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