EsuBft1052_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1052_2a-0001
Unique Name	EsuBft1052_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_352	contig	Scaffold_352:366315..367926 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1052_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	161
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_2a	EsuBft1052_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_352 366315..367926 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_2a-0001-exon	EsuBft1052_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_352 366315..367926 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_2a-0001-cds	EsuBft1052_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_352 366315..366581 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_2a-0001-exon	agat-three_prime_utr-509	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_352 366582..367926 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_2a-0001	EsuBft1052_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_352 366315..366581 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_352:366315..367926+
coding sequence from alignment at Scaffold_352:366315..367926+

spliced messenger RNA

>EsuBft1052_2a-0001 ID=EsuBft1052_2a-0001|Name=EsuBft1052_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1612bp|location=Sequence derived from alignment at Scaffold_352:366315..367926+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGGTGCATATTTATACTTCAAGACGGTAAAGGCTGGGTGGCAGTT
TGCAAAGGTGGTGCAGGTGACTCCGGAACCGAGGTGGGAAGAAGGCATCA
AGCATACTATCAAGCTGGTGGACATCGGCAAAAACATCAATGTGGCACTT
CTGGAGAAGAATCTGACGACGGACAACCTGGTACAAGATCCAGGAACGTG
GTGCTGGCATGCACACAGAACGGCGAAAAGTGTCAAGAAGTACATGTTTG
AGTTGGAGGATAATTAACTGGTTGCATTTTGAAGTGCGTAGGACTGCGGA
AAAGTGTGCCAAGTGGTGCAGTCGAATACGGGTCAAAATTCATGTTTGTT
TATGTGTTTTTGAAGTGCGTAGGACTGCGGAAAAGCGTGCCAAGTGGTGC
AATCGAATACGGGTCAAAATTAATGTGTTTGGGCAATTGTTGTTTTGGCT
AAAGAATGTACCTTGTGATGGAGCCGTATTGCAGTGGTACCACGGTCGTG
ACGAAATTGAGGTGTGTGTATTACATGAGTTGGTTCTGGTGGTTACTGTT
CAAACTTGTTGCAAGAGAGTGATATTGGTTGTAGGTCAAGCATTGCACGT
TGTGGTCAAGTGTTAATTCAAACGAGACTGATCGCAGATAAGTATGCGTT
GAACCTGGGGAGGGCGAATGTCGTGCAATAAGTCAACCCTAGTTTTGGTC
GGTGTAAGAAGACTTGGGGTAGTTTAATCGCAGTATATATAATAAAGGCG
TGATGGAAGGAAGGTCAAGAAAGAGTATGAGGTGGAGACTAGAATTGAGA
AGGTGTTGGTTTATGGTTGGAATGATGAGCTTATGAGGGAATTGCAGTTA
GTTGAGAGAGAGAGAGAGAGTTGGAGAGAAAGTGAAGCGGCGCAATTAGG
TAGATACAGAGGAAGCGGCGCAATTAGCTCGTGTCAGCTGATGTCGCGTG
CCCCCCCTGTTTCAGTGTTCAATTTCCCTGCTGTTCCCAGCCCACGAAGG
CCTAAGAAACACACTTTGATCGCAAGCAACATCGAGACGCGCAAACCCAC
GACCCCACTGGCACATCTACACATATATCTACGCGCGATAGGCCATCGCC
GGCCGATTCCACGTCAATAGTTCTTTGGGATTGCTAGTGAAATTGGATGT
TTTTGCGATGGTAGGGGCGCGGGCACGAAGTAGAGTTCAACCCGCCCAGG
AAGTGCATACAGTAGTAGGACGTTCCTAGCTCGTAGTGGTAGTTTGGTGT
GAGTGTTTACTTCGTTTTTGGTTTCATCTGCGTTTAGAATTGTTGAGTGG
AGGATGCCGTTTGCCGATTTCCCGATCTTGATTCTCCAGAACGAAAAGAA
GAGAACAAAGAGTACAAATGCCACAATTTTGAACATCGTCATGGTGCCAA
GGGCAGCAGTAGCAGTGGACCACGCGATTCAAGCCCCCACAGAACCCGGA
ATTTCCAGCACAAGATGCTGGTGAAAGGGTATCACTACCGCCAAAAAACC
TCACCGCACATATCGGCGTCTCCGCACACTGTGCGGAGACAACGATACCT
GTGCGATAATCTAGCAAATCATTCGGAACCCGCTTTTTTTCCGCACACCC
TGCGCCAAGACC

protein sequence of EsuBft1052_2a-0001

>EsuBft1052_2 ID=EsuBft1052_2|Name=EsuBft1052_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=88bp
MIGAYLYFKTVKAGWQFAKVVQVTPEPRWEEGIKHTIKLVDIGKNINVAL
LEKNLTTDNLVQDPGTWCWHAHRTAKSVKKYMFELEDN

mRNA from alignment at Scaffold_352:366315..367926+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1052_2a-0001 ID=EsuBft1052_2a-0001|Name=EsuBft1052_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1612bp|location=Sequence derived from alignment at Scaffold_352:366315..367926+ (Ectocarpus subulatus male Bft15b)
ATGATTGGTGCATATTTATACTTCAAGACGGTAAAGGCTGGGTGGCAGTT
TGCAAAGGTGGTGCAGGTGACTCCGGAACCGAGGTGGGAAGAAGGCATCA
AGCATACTATCAAGCTGGTGGACATCGGCAAAAACATCAATGTGGCACTT
CTGGAGAAGAATCTGACGACGGACAACCTGGTACAAGATCCAGGAACGTG
GTGCTGGCATGCACACAGAACGGCGAAAAGTGTCAAGAAGTACATGTTTG
AGTTGGAGGATAATTAACTGGTTGCATTTTGAAGTGCGTAGGACTGCGGA
AAAGTGTGCCAAGTGGTGCAGTCGAATACGGGTCAAAATTCATGTTTGTT
TATGTGTTTTTGAAGTGCGTAGGACTGCGGAAAAGCGTGCCAAGTGGTGC
AATCGAATACGGGTCAAAATTAATGTGTTTGGGCAATTGTTGTTTTGGCT
AAAGAATGTACCTTGTGATGGAGCCGTATTGCAGTGGTACCACGGTCGTG
ACGAAATTGAGGTGTGTGTATTACATGAGTTGGTTCTGGTGGTTACTGTT
CAAACTTGTTGCAAGAGAGTGATATTGGTTGTAGGTCAAGCATTGCACGT
TGTGGTCAAGTGTTAATTCAAACGAGACTGATCGCAGATAAGTATGCGTT
GAACCTGGGGAGGGCGAATGTCGTGCAATAAGTCAACCCTAGTTTTGGTC
GGTGTAAGAAGACTTGGGGTAGTTTAATCGCAGTATATATAATAAAGGCG
TGATGGAAGGAAGGTCAAGAAAGAGTATGAGGTGGAGACTAGAATTGAGA
AGGTGTTGGTTTATGGTTGGAATGATGAGCTTATGAGGGAATTGCAGTTA
GTTGAGAGAGAGAGAGAGAGTTGGAGAGAAAGTGAAGCGGCGCAATTAGG
TAGATACAGAGGAAGCGGCGCAATTAGCTCGTGTCAGCTGATGTCGCGTG
CCCCCCCTGTTTCAGTGTTCAATTTCCCTGCTGTTCCCAGCCCACGAAGG
CCTAAGAAACACACTTTGATCGCAAGCAACATCGAGACGCGCAAACCCAC
GACCCCACTGGCACATCTACACATATATCTACGCGCGATAGGCCATCGCC
GGCCGATTCCACGTCAATAGTTCTTTGGGATTGCTAGTGAAATTGGATGT
TTTTGCGATGGTAGGGGCGCGGGCACGAAGTAGAGTTCAACCCGCCCAGG
AAGTGCATACAGTAGTAGGACGTTCCTAGCTCGTAGTGGTAGTTTGGTGT
GAGTGTTTACTTCGTTTTTGGTTTCATCTGCGTTTAGAATTGTTGAGTGG
AGGATGCCGTTTGCCGATTTCCCGATCTTGATTCTCCAGAACGAAAAGAA
GAGAACAAAGAGTACAAATGCCACAATTTTGAACATCGTCATGGTGCCAA
GGGCAGCAGTAGCAGTGGACCACGCGATTCAAGCCCCCACAGAACCCGGA
ATTTCCAGCACAAGATGCTGGTGAAAGGGTATCACTACCGCCAAAAAACC
TCACCGCACATATCGGCGTCTCCGCACACTGTGCGGAGACAACGATACCT
GTGCGATAATCTAGCAAATCATTCGGAACCCGCTTTTTTTCCGCACACCC
TGCGCCAAGACC

Coding sequence (CDS) from alignment at Scaffold_352:366315..367926+

>EsuBft1052_2a-0001 ID=EsuBft1052_2a-0001|Name=EsuBft1052_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=267bp|location=Sequence derived from alignment at Scaffold_352:366315..367926+ (Ectocarpus subulatus male Bft15b)
ATGATTGGTGCATATTTATACTTCAAGACGGTAAAGGCTGGGTGGCAGTT
TGCAAAGGTGGTGCAGGTGACTCCGGAACCGAGGTGGGAAGAAGGCATCA
AGCATACTATCAAGCTGGTGGACATCGGCAAAAACATCAATGTGGCACTT
CTGGAGAAGAATCTGACGACGGACAACCTGGTACAAGATCCAGGAACGTG
GTGCTGGCATGCACACAGAACGGCGAAAAGTGTCAAGAAGTACATGTTTG
AGTTGGAGGATAATTAA