EsuBft1051_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1051_7a-0001
Unique Name	EsuBft1051_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_614	contig	Scaffold_614:1186..4656 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FM24
ProteomeId	EsuBft1051_7
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	298
Hectar predicted targeting category	signal peptide
Evalue	4.98e-18
EggNOG OGs	COG2059@1\|root,2QRJG@2759\|Eukaryota
Ec32 ortholog description	Chromate transporter
Ec32 ortholog	Ec-01_010380.3
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K07240
KEGG TC	2.A.51.1
Description	Chromate transporter
COG category	P
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1051_7a	EsuBft1051_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_614 1186..4656 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1051_7a-0001-exon	EsuBft1051_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_614 1186..1191 +
EsuBft1051_7a-0001-exon	agat-exon-99287	Ectocarpus subulatus male Bft15b	exon	Scaffold_614 1674..4656 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1051_7a-0001-cds	EsuBft1051_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_614 1186..1191 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1051_7a-0001-exon	agat-three_prime_utr-508	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_614 1791..4656 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1051_7a-0001	EsuBft1051_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_614 1186..1790 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_614:1186..4656+
coding sequence from alignment at Scaffold_614:1186..4656+

spliced messenger RNA

>EsuBft1051_7a-0001 ID=EsuBft1051_7a-0001|Name=EsuBft1051_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2989bp|location=Sequence derived from alignment at Scaffold_614:1186..4656+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGCGTTCTTGGGTTTCCAGGCCCCGTGGTGCATTCTTGTCGGCGG
CGTGCTTGGCTTCCTGTTGAGCGACACCTTGGCGTCCCTTGGGCAGGAGC
CATTTTTCCCTATCGAGACGTAGCGTTACTGTCCTCTCAACTGTCTCCCT
TTCTCTTTTCGCTTCCTCGTTATATGACTGTTGCTTTTTGCTGAGGGTAT
CTCAATTTTTTTCCGTCTTCGTCTCATCTCGAAGGATAGAGTGAAAGGAG
GCACATTGTTGGTGCACGGGAGGGGGGGGGGGGGGGGGGGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAAACCCAATCCCGATGGCAAACACCGAGGGGGGGGGCGT
ACTCTTATGTTTTGCATGTCTTAGCGGTTAGACCATTGACCACGCGTCCT
CGAGAGGACGGAGCATTGTTCCCACAGGACCGATCACCGATGGCCATTTT
AAGCCTCGTCCCCCACACACACGCTTTAAACTGGGATTTAGAGCGAATCT
TCGCGCTGAGGGGGGCCGGCGTGCATGGGGTCTGTCTCTTTTGGGGTGTT
GGGGTTAGAGACGACCGACTGCTGCTGGTGTTTGTTTACCCTGGTATACG
TTTGTTGTGGTTCATGAACGGTGGTGAACGCGATGCTGTAAGGTTGATTA
TTCATAGCCGGCCCCTTCAATCGGAGAATTGGTTGAGTTTGTTACACCTC
GATGCGTGTATGTATGCATAAGATGCTTCGTGCTTGCGCACAGCTTTCCT
ACGTGAAATGGTATGTACTGTATGAGGTGCTCTCAATTTCAGGATGAACG
GCTTTGCGAATTCGAACGCAAGTCTGTGATTTCCTCGATTGGAGACAAAG
CAAACACAGCAAACCGCTTCACTGTTTCGTGTCTTTTCGTTGGTGTACTG
CTGTAGAAGTAGGTCTGGTGATGATAACTCGGTGAGTAGCGACCCTTTTT
GGTTCACGCGCACCCACGTTCGGGTGTTGAATTTTCGGAGCGTGCGTGAT
CGTACAACCGAGCAAGAAGAAGGGAAGGTAGTCACCGTAATATTTTCGAT
TAAGAATTAACAGAAAATGCGCCCTCCCCAGTCGTTTTTCGCCTCGGAAT
ACTTTGGTGATGAGCTGGTGCGCCGCGCTATCCAGCCGCGTTTCTTGCGG
GAGTAGACTCGGTGTTGTGAGAACACCGACTTTTTGTCGTTTTGCTGTGA
TGGGTCTCTCCCTCTCTCTGCAAGAGCGCGCCGTTGCTATTTGTTGTCGT
TGTCTGTGTCTTGTCTTGTCTCTCGTTGGTGTTGAACAACATCACTTTGT
CGTTTCCAAGCGAACGTTAAGAGGGGAGGAACCCAAGCGCTACTTCTCTG
CCGAACGAGTTTTCTAGTGTAGGGACGGACAGAGTTTTTAGAAAGCATAT
GTATCATGCTTAGTTGGGGTGTGACCGGGGAAGGCGTCCGCGTCAGCTGA
ACAGCGCATTTATCACAGGGGATGTGTTGCAGTCTTCGTATGTGAGAGCT
TGAGCCTACCTGCTGGATGTACTGGGCTCAGTTGGAGTCTGTTTGAAGCC
CTGACATGGAATTCACTCGCGCGCCATTAGGCAATGGGCCTTTAGCTTTC
CAAACACGAAATAGATGTTCCCTCAAGGTCTACTGTATCAATAGCCAAGG
GCCACTGAAGCTCATCAGTACAGAACAGGGTTTGGTCATGAGATCACTTT
CGGCAGTATGCGACCCAAGAGGTGTGGAACACGAAACGCAAAGAAATGTC
CGGTCTAGCCACTGCTGCAGTCGCTACTCCAACCTTCACCCAAGGCTAGT
GAGCAGATGGCAGGAGCACGTTGTTTTCCGATGAAACTACAGGCTATGCA
CTTCTAAGTTCAACAACAAGCGATGGTCACTTTCGTTCAAGAAACGACAC
TACAATGATAGTCCATGTCGGCACACGCAAGCACGCCTTTGGCAAGGTAA
AAAAAGGTTTCGTGGCTCAGGACCTGCCGCCGCGAAAAATCCACTCGCAG
CAACACCCGTACCCTCACATTTTCGACCGCAACCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCCCCCCCCCCCCTGCCCTACGCTAAACCACCAAGAC
CGACTCTAGGGCCATGTTGAGACATGGACCTCCCCCTAAGACGACAACAT
TCCTTCCTTCGAGACAACAACAGCAGTGCCGCCTCTCGCATGTCGCAGCT
CTTCGCAATCCCCCGGACCACCAACCGGCACGAAGTCTTGCCTCGAGACT
TTCACGTCACGTTGGTGAGAGACCTTGTGTCTACTAACCCTCCATCCAAT
CGTCATCCTCCTTCTCGGCCTGATTCCGCGTCGCCCCCGCGCCCGCTGCC
GCCGCTCCAACGTGTGATTTCCTCTCAGACGCACAGCGGTCAGTTCCATC
CCCAAAAATTGTTCTCCCTCCACCACCTCCAGCGCTCCTACTCTCGCCAC
CATTTCCATCCCCCGACCGGCTCGCCGCATTGCCTTCCCACCCCCCTGAC
GTGCAGCAGGTCGAGGGCGGGGAGTGCGCAGCGTTATCGCGGGAGGGTGG
GTGCCTGTGCCTGTGATGGTGGTGGCGGTGGTGCCGCCTGTCTGTGTGCT
TGTTCTTCTCGTCCGGACGGGTACGGGGAGAGCACAGGAGTGTGCTTGTT
GCGCTCTACGGTTCGTAGTCGTCGTTGGTGTTGCCCCGGCAGCGGGTGTC
CCTGCTGGTGCTGCAGCTGCTGGTGCTGCTGTTGCTGCT

protein sequence of EsuBft1051_7a-0001

>EsuBft1051_7 ID=EsuBft1051_7|Name=EsuBft1051_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=40bp
MQAFLGFQAPWCILVGGVLGFLLSDTLASLGQEPFFPIET

mRNA from alignment at Scaffold_614:1186..4656+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1051_7a-0001 ID=EsuBft1051_7a-0001|Name=EsuBft1051_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3471bp|location=Sequence derived from alignment at Scaffold_614:1186..4656+ (Ectocarpus subulatus male Bft15b)
ATGCAGGTGAACTGCTTTCCACTGGTACTAATCTTGCCGTCGCGTTTCCT
TCGTCCATGTTCTCTACGGATTCGTTTTGGCACGTGCTTGCCTTTCACCG
GGGGACTCCGTGCAGATGAAAGCATATGGGCACTGCTGTTTTTTTTTGTT
TGTTTTGCCGTTTTTTTCTTGGTTTGCTTCACTCTGCTCTGCTACGTTTC
CCTTGTGCAAGTGAAGGTTGCTCGCGTTTGGCACTCGTGGAAGTTGCATC
TATTGTTTCGGACGAAGAAGCGGTCTCGCGCACGACACGAGTGCGCGGCT
AGCCGGCTCCAAGAGAAGCAAATGATTGCTCCATGCTCAAGGGGACGCAC
ATCGTCACTGGTAGAACGACTGATACAAAACAATCCGCAATATGTATGGT
CATTCGAGTGACGTCAATGGCGAGCAATCCACGATGGTGAGCACCCTCCT
GCCCCCGGCAATCGACCGCGTGTGTGTCCCCCTGTCAGGCGTTCTTGGGT
TTCCAGGCCCCGTGGTGCATTCTTGTCGGCGGCGTGCTTGGCTTCCTGTT
GAGCGACACCTTGGCGTCCCTTGGGCAGGAGCCATTTTTCCCTATCGAGA
CGTAGCGTTACTGTCCTCTCAACTGTCTCCCTTTCTCTTTTCGCTTCCTC
GTTATATGACTGTTGCTTTTTGCTGAGGGTATCTCAATTTTTTTCCGTCT
TCGTCTCATCTCGAAGGATAGAGTGAAAGGAGGCACATTGTTGGTGCACG
GGAGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCCA
ATCCCGATGGCAAACACCGAGGGGGGGGGCGTACTCTTATGTTTTGCATG
TCTTAGCGGTTAGACCATTGACCACGCGTCCTCGAGAGGACGGAGCATTG
TTCCCACAGGACCGATCACCGATGGCCATTTTAAGCCTCGTCCCCCACAC
ACACGCTTTAAACTGGGATTTAGAGCGAATCTTCGCGCTGAGGGGGGCCG
GCGTGCATGGGGTCTGTCTCTTTTGGGGTGTTGGGGTTAGAGACGACCGA
CTGCTGCTGGTGTTTGTTTACCCTGGTATACGTTTGTTGTGGTTCATGAA
CGGTGGTGAACGCGATGCTGTAAGGTTGATTATTCATAGCCGGCCCCTTC
AATCGGAGAATTGGTTGAGTTTGTTACACCTCGATGCGTGTATGTATGCA
TAAGATGCTTCGTGCTTGCGCACAGCTTTCCTACGTGAAATGGTATGTAC
TGTATGAGGTGCTCTCAATTTCAGGATGAACGGCTTTGCGAATTCGAACG
CAAGTCTGTGATTTCCTCGATTGGAGACAAAGCAAACACAGCAAACCGCT
TCACTGTTTCGTGTCTTTTCGTTGGTGTACTGCTGTAGAAGTAGGTCTGG
TGATGATAACTCGGTGAGTAGCGACCCTTTTTGGTTCACGCGCACCCACG
TTCGGGTGTTGAATTTTCGGAGCGTGCGTGATCGTACAACCGAGCAAGAA
GAAGGGAAGGTAGTCACCGTAATATTTTCGATTAAGAATTAACAGAAAAT
GCGCCCTCCCCAGTCGTTTTTCGCCTCGGAATACTTTGGTGATGAGCTGG
TGCGCCGCGCTATCCAGCCGCGTTTCTTGCGGGAGTAGACTCGGTGTTGT
GAGAACACCGACTTTTTGTCGTTTTGCTGTGATGGGTCTCTCCCTCTCTC
TGCAAGAGCGCGCCGTTGCTATTTGTTGTCGTTGTCTGTGTCTTGTCTTG
TCTCTCGTTGGTGTTGAACAACATCACTTTGTCGTTTCCAAGCGAACGTT
AAGAGGGGAGGAACCCAAGCGCTACTTCTCTGCCGAACGAGTTTTCTAGT
GTAGGGACGGACAGAGTTTTTAGAAAGCATATGTATCATGCTTAGTTGGG
GTGTGACCGGGGAAGGCGTCCGCGTCAGCTGAACAGCGCATTTATCACAG
GGGATGTGTTGCAGTCTTCGTATGTGAGAGCTTGAGCCTACCTGCTGGAT
GTACTGGGCTCAGTTGGAGTCTGTTTGAAGCCCTGACATGGAATTCACTC
GCGCGCCATTAGGCAATGGGCCTTTAGCTTTCCAAACACGAAATAGATGT
TCCCTCAAGGTCTACTGTATCAATAGCCAAGGGCCACTGAAGCTCATCAG
TACAGAACAGGGTTTGGTCATGAGATCACTTTCGGCAGTATGCGACCCAA
GAGGTGTGGAACACGAAACGCAAAGAAATGTCCGGTCTAGCCACTGCTGC
AGTCGCTACTCCAACCTTCACCCAAGGCTAGTGAGCAGATGGCAGGAGCA
CGTTGTTTTCCGATGAAACTACAGGCTATGCACTTCTAAGTTCAACAACA
AGCGATGGTCACTTTCGTTCAAGAAACGACACTACAATGATAGTCCATGT
CGGCACACGCAAGCACGCCTTTGGCAAGGTAAAAAAAGGTTTCGTGGCTC
AGGACCTGCCGCCGCGAAAAATCCACTCGCAGCAACACCCGTACCCTCAC
ATTTTCGACCGCAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCC
CCCCCCCCTGCCCTACGCTAAACCACCAAGACCGACTCTAGGGCCATGTT
GAGACATGGACCTCCCCCTAAGACGACAACATTCCTTCCTTCGAGACAAC
AACAGCAGTGCCGCCTCTCGCATGTCGCAGCTCTTCGCAATCCCCCGGAC
CACCAACCGGCACGAAGTCTTGCCTCGAGACTTTCACGTCACGTTGGTGA
GAGACCTTGTGTCTACTAACCCTCCATCCAATCGTCATCCTCCTTCTCGG
CCTGATTCCGCGTCGCCCCCGCGCCCGCTGCCGCCGCTCCAACGTGTGAT
TTCCTCTCAGACGCACAGCGGTCAGTTCCATCCCCAAAAATTGTTCTCCC
TCCACCACCTCCAGCGCTCCTACTCTCGCCACCATTTCCATCCCCCGACC
GGCTCGCCGCATTGCCTTCCCACCCCCCTGACGTGCAGCAGGTCGAGGGC
GGGGAGTGCGCAGCGTTATCGCGGGAGGGTGGGTGCCTGTGCCTGTGATG
GTGGTGGCGGTGGTGCCGCCTGTCTGTGTGCTTGTTCTTCTCGTCCGGAC
GGGTACGGGGAGAGCACAGGAGTGTGCTTGTTGCGCTCTACGGTTCGTAG
TCGTCGTTGGTGTTGCCCCGGCAGCGGGTGTCCCTGCTGGTGCTGCAGCT
GCTGGTGCTGCTGTTGCTGCT

Coding sequence (CDS) from alignment at Scaffold_614:1186..4656+

>EsuBft1051_7a-0001 ID=EsuBft1051_7a-0001|Name=EsuBft1051_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=123bp|location=Sequence derived from alignment at Scaffold_614:1186..4656+ (Ectocarpus subulatus male Bft15b)
ATGCAGGCGTTCTTGGGTTTCCAGGCCCCGTGGTGCATTCTTGTCGGCGG
CGTGCTTGGCTTCCTGTTGAGCGACACCTTGGCGTCCCTTGGGCAGGAGC
CATTTTTCCCTATCGAGACGTAG