EsuBft1051_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1051_6a-0001
Unique NameEsuBft1051_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_614contigScaffold_614:13057..17203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog44056.XP_009033469.1
ProteomeIdEsuBft1051_6
Ownerapollo_admin@sb-roscoff.fr
Noteprotein brick1 os:dictyostelium discoideum gn:brk1 pe:1 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length1813
Hectar predicted targeting categoryother localisation
Evalue4.54e-18
EggNOG OGs2CHT7@1|root,2S3PY@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_010360.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameBRK1
KEGG koko:K05752
KEGG Pathwayko04810,map04810
GOsGO:0000902,GO:0000904,GO:0001701,GO:0002252,GO:0002253,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0006810,GO:0006897,GO:0006909,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007264,GO:0007265,GO:0007275,GO:0007399,GO:0007417,GO:0008064,GO:0008150,GO:0008154,GO:0008284,GO:0008360,GO:0008582,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010026,GO:0010090,GO:0010591,GO:0010592,GO:0010638,GO:0016020,GO:0016043,GO:0016192,GO:0016601,GO:0021551,GO:0022603,GO:0022604,GO:0022607,GO:0023052,GO:0030027,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030041,GO:0030054,GO:0030154,GO:0030175,GO:0030832,GO:0030833,GO:0030838,GO:0031143,GO:0031209,GO:0031252,GO:0031268,GO:0031269,GO:0031334,GO:0031344,GO:0031346,GO:0032271,GO:0032273,GO:0032433,GO:0032501,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0034315,GO:0034622,GO:0035556,GO:0038093,GO:0038094,GO:0038096,GO:0040008,GO:0040011,GO:0042127,GO:0042802,GO:0042995,GO:0043009,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044877,GO:0045010,GO:0048010,GO:0048468,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048638,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051125,GO:0051127,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051258,GO:0051259,GO:0051260,GO:0051489,GO:0051491,GO:0051493,GO:0051495,GO:0051674,GO:0051716,GO:0051960,GO:0051963,GO:0060187,GO:0060491,GO:0065003,GO:0065007,GO:0065008,GO:0070206,GO:0070207,GO:0071840,GO:0071944,GO:0090066,GO:0090558,GO:0090626,GO:0097435,GO:0098657,GO:0098858,GO:0110053,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:1902743,GO:1902745,GO:1902903,GO:1902905,GO:1904396,GO:2000026,GO:2000601
Descriptionregulation of actin polymerization or depolymerization
COG categoryS
BRITEko00000,ko00001
Cross References
External references for this mRNA
DatabaseAccession
GO0032403
GO0070207
GO0016601
GO2000601
GO0048365
GO0045087
GO0031209
GO0048870
GO0070062
GO0030027
GO0010090
GO0038096
GO0055085
GO0042802
GO0001701
GO0005829
GO0010592
GO0008284
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1051_6aEsuBft1051_6aEctocarpus subulatus male Bft15bgeneScaffold_614 13057..17203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1051_6a-0001EsuBft1051_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_614 14134..16092 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1051_6a-0001-exonagat-exon-99285Ectocarpus subulatus male Bft15bexonScaffold_614 13057..13285 +
EsuBft1051_6a-0001-exonEsuBft1051_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_614 13925..14220 +
EsuBft1051_6a-0001-exonagat-exon-99286Ectocarpus subulatus male Bft15bexonScaffold_614 15916..17203 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1051_6a-0001-exonagat-five_prime_utr-314Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_614 13057..13285 +
EsuBft1051_6a-0001-exonagat-five_prime_utr-315Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_614 13925..14133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1051_6a-0001-cdsEsuBft1051_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_614 14134..14220 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1051_6a-0001-exonagat-three_prime_utr-507Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_614 16093..17203 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1051_6a-0001 ID=EsuBft1051_6a-0001|Name=EsuBft1051_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1813bp|location=Sequence derived from alignment at Scaffold_614:13057..17203+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATACGCTCTCTTCATGACCTATTTTGGCATTCGAGTGTAGTCAGTGCGCG
AGAGTCCCTGTTTCACGACCTTTAGTTTTGTATACGATATAAGAGAATAT
TCCCTTACAGTGAGATACTGTTTAAGACAATTCTCTCTTATACCATAGCC
AACACGATATAACAGAAAGCCGGATTTAAGAGAGTGAAATTGGCTTGTAC
CGACCCTCTCTTAAACCGTAGCCGCTACTGGGCAACAGAGAGTAGCGCAG
CAGCACGACAGGCTGTGTGTCGCAATCACGACAGCGTGGGGTGCCCTGCA
GATAGGTGTCCGACGGGGCGGGGGGGAAGGAGCGGCGCAACCTCGGCTGA
CAGCGTAGACAATCACACCGCCTCTTCTTCGGTGTCTCTGCTTCTGTCTC
CCGTGACTCTGGAGTGGCGCAGCAGGCAGGGAGGCAAGATGGCTAGCAAG
GCAACTACGGATGCCATCCAGCAAGACTGGAAGGAGAGAGAGATGATCGA
GGTGGTTCATCTCAATATTCTCAAGATCACGAAGTTCTTAAACGAGTTCG
AGGTGTCCGTGCGCTACAAGCTTTCCACGCTGGCGGAGCGGGTTGGATCG
TTGGAGCGACATCTCGAGTACTGCGAAACCGCGGTCAAGGACAAGCAACA
GCTGCAGCAGTTCGACTCGAGTTCGAGGATCGACGGTGGTCATAGGAGCT
GATTTCGATGGGCTTGGCTTGGCTGCCTTTGTGCGTCGGCGCGCGTTTGT
GTGCTGGTGGTTCTGTTGTTGACGAGTCTTAGGTTCTACCCTTGACGATT
GAGATAAATGTTGCATCAGGAGTTTTGGCCGCCTGGCGCACGAACGGCCC
GCCATAGGTTGGCCATTCATTGTTTTCCAAGTCTGCCGTAGTTGATGTTT
ACATTATGTGTGTGTCGTGCATTGCAGGTTTTGTATTCTAGCGCGTTGTC
AAATAGGTTTGGTGTATTCAGTCGCTTGGAAAGCTACTGGCAGTGTTGCA
ACGAGGTTTAAGAAGCGATGCGTTCTCATCAAGCTGGCTGCATGGTACTC
CCGCGGCAAAGATTGAGAAGCACGTCCTCGAAGGTCGTGTGCAGCTCAGG
TGCTGAATTTGCACCCGTCCGTGCACCGCGAGCGCTAGTCGTTTGTTGAA
CGTGGAACTTTGTGAAGATGGATGCTCTCAGCTTCTGTTTCTTTCCTAGC
TTCGAGCCTGCGACAACGGTCGTGGGTGTTGTCGCAGTACCCTGCTGGCG
TTTTTCTTCTCCTGCCGGATACGAGAACGAGTTGTCAGTATGTTGTCCTC
CAGCGGGGGGCTGGGTGAAAAGCCTGAGCTCACCAAACTTTCCCGGTCAT
AGCGCTGGTTCGATTGGTGTGTAGCACGTGTATGCAGTTGTTGGCGCTTT
GTCTCCCTTGCTTTCTTTGCCGAACGCACCAACAACGTCTTTTTTTGGCC
GTATTTTAATACATCGACCGGTGATTTGAGCTGGTTGACTGATCATTCCT
TCGTGGAGTACTGGCCATGGGGCTGCATCAGGGGGATCTGGTGGACTATG
TAATTAACGTCGCTAATCTAGCCTGTGTTGTAAAAGTACCGCTGGCGGTT
GACTTTTTCGCCACAAGCAACAACGGCTGCTCCTTTTTTTCGTTATCTGT
TGCGCATCGTCTGTTTTGAGCGGTTTGTGGTGTCGACTTTTGAACAGCCT
TGGCCTCCTATTATTCCGACCGAGCAAGTTCTTGTGTGTGTGTTTTGTTA
GACTCCAATCTTCGCCGTTTTACCCGCTTGTGCATGGCAACAAAAAATGC
ATTTGTACCAGCC
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protein sequence of EsuBft1051_6a-0001

>EsuBft1051_6 ID=EsuBft1051_6|Name=EsuBft1051_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=87bp
MASKATTDAIQQDWKEREMIEVVHLNILKITKFLNEFEVSVRYKLSTLAE
RVGSLERHLEYCETAVKDKQQLQQFDSSSRIDGGHRS
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mRNA from alignment at Scaffold_614:13057..17203+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1051_6a-0001 ID=EsuBft1051_6a-0001|Name=EsuBft1051_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4147bp|location=Sequence derived from alignment at Scaffold_614:13057..17203+ (Ectocarpus subulatus male Bft15b)
ATACGCTCTCTTCATGACCTATTTTGGCATTCGAGTGTAGTCAGTGCGCG
AGAGTCCCTGTTTCACGACCTTTAGTTTTGTATACGATATAAGAGAATAT
TCCCTTACAGTGAGATACTGTTTAAGACAATTCTCTCTTATACCATAGCC
AACACGATATAACAGAAAGCCGGATTTAAGAGAGTGAAATTGGCTTGTAC
CGACCCTCTCTTAAACCGTAGCCGCTACTGTAAGCTACATTGCACACTGG
GAGAGTAGCGAAGGAAATGGATACTGCCAGGCAAATCCCGAGAGCCAGCC
TGAGTGTACACAAATAAATATGTGCATTTTCACGAGGTAGCGGAGAAGAG
GAGGGGAACCTACACAAACCAGGGAGGGCGAGACATACATAGCACCACCT
CCCGCTCCTACGTACGGCGAAGAAAGTGGGACGAAACTCTGTGCTGCAGC
CTGAAACAAGCACTTGACTCACAGGGTCGACGGGGAGCTCGGTTCCCAGC
ACCCCCAGGGAGGCCGTGCAGCCTCCCCGCGCGGCGTAGGCAAAGTGCCC
CTGAAACCACTCCACCCCGGGGGGCAAGCAGAACACCGCCCGGCCATGGA
CGAGGCCGCCAGAGCCTCGGTGCCCCACAAACCCCTCTTCGCGATGAGCG
TCGTCGTCGTTGGATCCTGGTTGCGGAGGAATGCTCGTCGGGTGCCCTGC
ACCCGGAGGGCGGCAGCCGCCGCTGCTGTTACCGCGATCTTGGGCCAGTG
CCGTCGCAGCTCGCCTCCTCGACGACGCCGATATCCATTCGGCGCAGGGG
AGCATCGTGGACGACATCAAGGTCGACGGCAGAGTGTGTGTGTGTCAGAG
AGAGGGTACCAGGTGCAGGGGCAACAGAGAGTAGCGCAGCAGCACGACAG
GCTGTGTGTCGCAATCACGACAGCGTGGGGTGCCCTGCAGATAGGTGTCC
GACGGGGCGGGGGGGAAGGAGCGGCGCAACCTCGGCTGACAGCGTAGACA
ATCACACCGCCTCTTCTTCGGTGTCTCTGCTTCTGTCTCCCGTGACTCTG
GAGTGGCGCAGCAGGCAGGGAGGCAAGATGGCTAGCAAGGCAACTACGGA
TGCCATCCAGCAAGACTGGAAGGAGAGAGAGATGATCGAGGTGGTTCATC
TCAATATTCTCAAGGTCAGCTTGTACACCCACGAAAAGCATAGTGATTGC
AAGTACATATTTCTGCTGCTGTTGCACCATATTGACATCATCCACCATCT
TGTGCAGGGTACTTCATTCATCTGCTACGCTTCCCGCACGGGCCACGTCT
GAGATAGAATCCATACTTTTCAGTCCATGGTTGTGGTAAGTGGTGGGTTC
CACATGAACTATTTTTGTATGGAAGCACCATGTAGCTGCAAGTTGTGCGC
CTATACGGCAAGCACCGGTCCGGCCTGCTCGCCAATGTCGGGTCGAGGTT
CATGTTTTGTCGCCACTACGCCACTACTGATGCTGTCCAGCCTACGCTAG
GATGAGCCTATTTTTTCTCATCAGATCTTTCTGAGTTTTCGGTGCTGCAT
ATATTAGATGGAGGCTGCAAATCAAATCCGGAACTGCACGAGCAGCGGTA
GCGTGCTGCTCATAGGCTACTCTGTAAGTCCCTTGCAAGCAATGAATCCT
ATTGTTGCTTCTTGTTTTTTCATCGCAGTAGTTCCGCCTACTCCGTATGC
CCCACACTCGTATGGTGTAGGGACGCAGGCGGCATCTTCCAACTCTTCTT
CAGTGCACTGCTTGTTGAAGCAACATGTGTTTCGCATCCCAACCGATCCG
TCTTGGGTGCACTATGCGCTTCAGGCACCTACCTTGCGGTGCCAACAAGC
GCGGAATACCGCCGCGGTATCCGCTGTTTATCGTGGGAATGCCAGCCTCC
ACCACCCATTGCCACCATGTCTCATCTCTCTGTGTCAACGCAATCGAAAT
GTTGACACTTGCAGGTAAGATAGTACTACGCCGCTTGGTCTTGAGTGCTG
GTCTTGAGTACTGCACGTTAAACTAAACCAAAGCGCCTTTTTTTTCTTCT
TCAAATTTATTGACTTCGTCACCTTCATTGTCACTGGATGTGGAAGCCAG
CAGCTGTAAACCGCCCCCAAAGCCGAGAACAACCTACAGAGTAGTGCAAC
CGTAGCAGCGTTGATACACGGGCACAACAAGAGGCCCCAGTAAGCGGCCG
CCTGGCTGAGAGTTTGGCCTGTTTGTCATGATCCTCTCTAAGTAGACGGG
CTTGTCATCAAGCCTTCGTCTTTTTGTTGAACCGACGAGTTCTTCCACAT
CAGATTCGCAAGGCATGTACAGCAGTCGCGACGTCTATCTACCTTTTTGT
TTGGAGCGATCACCAAATCGATCGCTTTGTCGCGCTGTCGATCGCTTTGT
CGTGCTGTTGATCGCTTTATCGCCCCAACTGGTCCTCTTTTACCTCCACT
GCCCTTCCTTGGCGTGAACGTATGCTCTTATCACAGGACATCATTGAAAC
CCGGAAGTCCTCAACATCGTATCACCGCGTTCATGTACGGCCCCAAGCCC
GGACTGCCTGTCTCGTACGCACGCCACGGTTGTTTCAAGCCGGCGCAGGC
TGTATCTATATATCCCCACACTAGGTGCCGCTCGTCCTGTGTACGGTGCT
TGGTCACGACCAGCCTCTCCCCCCCCCAAGTGCGTCTCCAAGTCATATCC
TGGGCCCCTTGTCCACGCCTCAAGGCCCGAAAGCTTCTGCTCGTCCTGGG
TGCGTGGTTACTGACCAGCCTCTTCTCCCTCCAACTCAAACGCCCCAACC
TAACTGAGCTCTCTTTCTTTCGTTCTACTGCTGTACCGCCCACGGAACGA
CAATACCAGATCACGAAGTTCTTAAACGAGTTCGAGGTGTCCGTGCGCTA
CAAGCTTTCCACGCTGGCGGAGCGGGTTGGATCGTTGGAGCGACATCTCG
AGTACTGCGAAACCGCGGTCAAGGACAAGCAACAGCTGCAGCAGTTCGAC
TCGAGTTCGAGGATCGACGGTGGTCATAGGAGCTGATTTCGATGGGCTTG
GCTTGGCTGCCTTTGTGCGTCGGCGCGCGTTTGTGTGCTGGTGGTTCTGT
TGTTGACGAGTCTTAGGTTCTACCCTTGACGATTGAGATAAATGTTGCAT
CAGGAGTTTTGGCCGCCTGGCGCACGAACGGCCCGCCATAGGTTGGCCAT
TCATTGTTTTCCAAGTCTGCCGTAGTTGATGTTTACATTATGTGTGTGTC
GTGCATTGCAGGTTTTGTATTCTAGCGCGTTGTCAAATAGGTTTGGTGTA
TTCAGTCGCTTGGAAAGCTACTGGCAGTGTTGCAACGAGGTTTAAGAAGC
GATGCGTTCTCATCAAGCTGGCTGCATGGTACTCCCGCGGCAAAGATTGA
GAAGCACGTCCTCGAAGGTCGTGTGCAGCTCAGGTGCTGAATTTGCACCC
GTCCGTGCACCGCGAGCGCTAGTCGTTTGTTGAACGTGGAACTTTGTGAA
GATGGATGCTCTCAGCTTCTGTTTCTTTCCTAGCTTCGAGCCTGCGACAA
CGGTCGTGGGTGTTGTCGCAGTACCCTGCTGGCGTTTTTCTTCTCCTGCC
GGATACGAGAACGAGTTGTCAGTATGTTGTCCTCCAGCGGGGGGCTGGGT
GAAAAGCCTGAGCTCACCAAACTTTCCCGGTCATAGCGCTGGTTCGATTG
GTGTGTAGCACGTGTATGCAGTTGTTGGCGCTTTGTCTCCCTTGCTTTCT
TTGCCGAACGCACCAACAACGTCTTTTTTTGGCCGTATTTTAATACATCG
ACCGGTGATTTGAGCTGGTTGACTGATCATTCCTTCGTGGAGTACTGGCC
ATGGGGCTGCATCAGGGGGATCTGGTGGACTATGTAATTAACGTCGCTAA
TCTAGCCTGTGTTGTAAAAGTACCGCTGGCGGTTGACTTTTTCGCCACAA
GCAACAACGGCTGCTCCTTTTTTTCGTTATCTGTTGCGCATCGTCTGTTT
TGAGCGGTTTGTGGTGTCGACTTTTGAACAGCCTTGGCCTCCTATTATTC
CGACCGAGCAAGTTCTTGTGTGTGTGTTTTGTTAGACTCCAATCTTCGCC
GTTTTACCCGCTTGTGCATGGCAACAAAAAATGCATTTGTACCAGCC
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Coding sequence (CDS) from alignment at Scaffold_614:13057..17203+

>EsuBft1051_6a-0001 ID=EsuBft1051_6a-0001|Name=EsuBft1051_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=264bp|location=Sequence derived from alignment at Scaffold_614:13057..17203+ (Ectocarpus subulatus male Bft15b)
ATGGCTAGCAAGGCAACTACGGATGCCATCCAGCAAGACTGGAAGGAGAG
AGAGATGATCGAGGTGGTTCATCTCAATATTCTCAAGATCACGAAGTTCT
TAAACGAGTTCGAGGTGTCCGTGCGCTACAAGCTTTCCACGCTGGCGGAG
CGGGTTGGATCGTTGGAGCGACATCTCGAGTACTGCGAAACCGCGGTCAA
GGACAAGCAACAGCTGCAGCAGTTCGACTCGAGTTCGAGGATCGACGGTG
GTCATAGGAGCTGA
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