EsuBft1051_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1051_5a-0001
Unique Name	EsuBft1051_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_614	contig	Scaffold_614:17560..22875 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1051_5
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	TRANSMEMBRANE
Protein domains	NON_CYTOPLASMIC_DOMAIN
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	156
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-01_010350.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1051_5a	EsuBft1051_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_614 17560..22875 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1051_5a-0001	EsuBft1051_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_614 20495..22056 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1051_5a-0001-exon	agat-exon-99284	Ectocarpus subulatus male Bft15b	exon	Scaffold_614 17560..17677 +
EsuBft1051_5a-0001-exon	agat-exon-99283	Ectocarpus subulatus male Bft15b	exon	Scaffold_614 20445..20939 +
EsuBft1051_5a-0001-exon	EsuBft1051_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_614 21920..22875 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1051_5a-0001-exon	agat-five_prime_utr-312	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_614 17560..17677 +
EsuBft1051_5a-0001-exon	agat-five_prime_utr-313	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_614 20445..20494 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1051_5a-0001-cds	EsuBft1051_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_614 20495..20939 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1051_5a-0001-exon	agat-three_prime_utr-506	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_614 22057..22875 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_614:17560..22875+
coding sequence from alignment at Scaffold_614:17560..22875+

spliced messenger RNA

>EsuBft1051_5a-0001 ID=EsuBft1051_5a-0001|Name=EsuBft1051_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1569bp|location=Sequence derived from alignment at Scaffold_614:17560..22875+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CACCAACAGCAGCAGTCCACGCTTGTTCACCTGGCTTCACACTTGCACCT
TCCCCTTGTGCTTAGCTTTTGCACAAGAGGTAGAACAACGCCCACACCAC
GACAAGCGAAGGATTGAGCCAGGTCAACCATGGGAAAGGAGTCGAAAGCG
TCCGAGGCACAGCCAGCGATGGCGACAGCAGTTGCCGTCCCCGTCGAAGG
CGGCGACGGCGGCGGCAGTACTGCCGGCGCACCCGGCGCACACCAGCACC
AACAACAAGACCACAACAACCAACATCAGAAAAAGAAGCTGCAGCACAAG
GGAGGAAGGGGCGGAGGAGGGAGGGGCGGTGGGGGGAGGGGCGGAGGAGG
AGGCACGGGCAAGGGGGGAGGGGGGGGGAGAGGAAAAGGCGCCGGCAAGG
GTGGCAGGAGAGCAGGGCACGGTGTAGACCATGGCGGAGGCGTTTATTCC
AAGGGCGGGGCCAAGGGTCCCCGGATGAGAGGCAGCCACGTTGGGCCGGG
AACGTTCGGCTGCGGGCGCCTCGGAATGCTCTTCATGGCGTTTCGCTTCT
TGCAGAGGAAGGTCGGCAAGAAGAACAAGAAGGGCAACCACAACAACAAC
AGAAGACAACACGGAAACCCACACGGACTGCCGAACAACCAGCCTTACGC
CTCCGGGCAGCCGCAACCGTACGTGTCTAACGCGCAGCACGCGGGGGAAG
AGAAGGTCGAGGAGATGCCGGTGGCAGTTGGCGTACCCGTCGAGAAGTGA
AACCGTCGCCGGAATAACCGCCGTTCGTGATACCGTCGTTTGCTCCTTTT
TGGGATCTGAATATGCGGGCATATCCACTGCGGTACCCATGAGCGTGGAT
GGAGATCAACGTCGAAGGTGGTGCGGGTACTCGTCAACACTGAGATTGCT
AACGTTTTGTGCATGATCTGAGTTGATTGTCGTTCGTTCGATTTAATATC
GTGTGCAGATTCGTGCTTCTTGAGCACCTCTTCAGGTTCTGGAAGAGCTC
TTCGTTGTGTATTTGGGTGTTCCTTGAGGGTCGCGACTTTTTAAGGAATG
TTATGACGCGTTCGACCCTCCCCCCTACGTTGTTGGACGTACTCCTCCTA
TGCTCGGAAGATTTTCTCTCGTATTCCATCGTCTTGAAGAAATTATTTTT
TGGCTTATGTAGAAAAAGTAGGTAACGTCTGTAGTTGTAGCTTATGACAG
TCATTGTGGTCGTTGTCGACATGCTTAAGATGGTTTCTCCGTTGTTTCTT
CTGTTATTCACTTTATGATACAAAAGCTGGTTTTTCGTTCTGATGCAGGC
CCTGTAAGCATGATCGATCTTGGTGTGGGGGTTTAATTGCGGCGTTTTCT
GGCCAGAGCTAGAGATGTAAGAGGAAATGAATGTAAACGGGGTGTAAGTG
TGCGTCGTGGGGGTTAGTATGTAATCTGGACTTTGTTTTGAAACGCCGGT
CAAGCTTCAATTTTCCCTCCTTTCCTTAGACCCGCGCGCGTACTTTCACC
AGCTTGCGGTGTTCCTCGAGCTGGCCCTTGTAGGTGGTACAATACCTGCT
GTGTGTAGGGTGCATTTGT

protein sequence of EsuBft1051_5a-0001

>EsuBft1051_5 ID=EsuBft1051_5|Name=EsuBft1051_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=193bp
MATAVAVPVEGGDGGGSTAGAPGAHQHQQQDHNNQHQKKKLQHKGGRGGG
GRGGGGRGGGGGTGKGGGGGRGKGAGKGGRRAGHGVDHGGGVYSKGGAKG
PRMRGSHVGPGTFGCGRLGMLFMAFRFLQRKVGKKNKKGNHNNNRRQHGN
PHGLPNNQPYASGQPQPYVSNAQHAGEEKVEEMPVAVGVPVEK

mRNA from alignment at Scaffold_614:17560..22875+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1051_5a-0001 ID=EsuBft1051_5a-0001|Name=EsuBft1051_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5316bp|location=Sequence derived from alignment at Scaffold_614:17560..22875+ (Ectocarpus subulatus male Bft15b)
CACCAACAGCAGCAGTCCACGCTTGTTCACCTGGCTTCACACTTGCACCT
TCCCCTTGTGCTTAGCTTTTGCACAAGAGGTAGAACAACGCCCACACCAC
GACAAGCGAAGGATTGAGGTGAGGAGATGCTTCATTGAAGGTTTGGGTTG
GTTACACGCGATGTTCACAGCAGTACATACGTGTGCATAGCATGTCAACA
AGGGTGGGTGATCTCTTCCGACTCTCTAGGCGCTCTGCTCATGTGCAGTT
CCGACTCTCCTCCATTGCCTGTGTCAATGCCGCCATGTTGCTGACTCTCG
TTCTGGGCGTTGTTAAGCGCGTCCAAAAGTTGACGACAGCGGTGTCGGCG
TCAGGTTGAAGACACTCAAAGTTCCTGCGCCAAATTTCAAACGACGTGCG
GAACCCCCCCCCGTATTTTCGAGGGTCAGAACATGGAGGGTGAGCAGCAG
CAGTGCTGAAGTCAGCCAGCGCTCTGCCCGTCTTTGCGAATAGGCTGCAG
CAAGGTAGGAGTTGTTCCACATTGCTGGCTGTGCATATTCACTGCTGGTT
AGTGGCATGCTACACTTGCAGTTAACCCAGCTGACGGCCGAAAATCCGGT
GGGGGCACGCCGGGTAAGGTTAACCCTTCTATTGGGAAAGCAAAGTCTTG
TACCTGGTATGTAGTTGTTAAGTCACTCAGGAGCAAAGCGGGCTTCACCC
ATGTAAGGTATTCGTTCATCGACGAGGCCTTGCGAAAGAGCAGTCAGGGT
CTGCTGGGTCACGCGCGCGGTGGGTGCACGCCAGGGGGGAGGTATCCCCG
GCGGGGAAAGTCAGTAGAGAAAGGGGATGGTGACCCACAGGAGCAAGCCG
GTTTCACCCACATGTAGATTAGTATAAGTAGGAAACATAGATACAACACA
GAAACACTACCCGTTCTAGATAGAAAGATGTTCAGTCATCGACGCGAACG
ATGAACATATACACGTGGGTGAAGCCGGCTTGCTCCTGGGGGACCATGCC
CTCTCTTGACTTTCCTCGTGTGTTACCTACCCTCTGGGGTGCCCCCACCC
AGCAGGCCCTGAATTGGTCTTTCGTAGTAGGCTTTGAAGCGTGCAACAAC
ACAACAAGGTTCAGCGGTTTTTCGTTTCGTTGGCCACTTCGTTTTTCCAC
AGCAGCGCCACACATGTTTTGTGTTCGTTCATCGACGAGACACCTTTAAT
CCTCGAGCCGGGGGGGAAGGTAGGTTAAGAGAAAGGGCAAGGTCACCCAG
AACAAACCCCGCTTCAACCACGTAGGTGTTCGTTCACAGACGAGAAGCCT
CGAATAACACCCACACGTCGTTGAAGCTCGGTTTCGTGTGGGCGACCTTA
GAAACCCCTTCTATTCACTGCTGTCTGTCCTCACGGTTTACTTCCCTGGT
GTGACCCGACCGCGCGCGTGAGACCCAGCAGCCCCTGACGCCTCGTTCGT
AAGTATCGAGACGCAACATCACCGGCAAGTGGCAGCCGTTGCGTTTGGTA
TTCGCGCTTTTCATTTTTTTTCCACGGTACCCCCTTCTGGTACTACTTAT
CATGCCCCCTTGCCCTTATTCTCAGACCCAGGGGCACCCGGTGAGCAGCT
GGAACCACCGCATGGTCATGGACGATATCTCCAACTTGGTTTGATATCAC
ATCAAACTTTTGTAGCATATAGGTCATTGGTTATTTGTAGTTTCATGTTT
CGTGACGTCATCTACATAGCGCGCACGTGTAGTGACTGTTCAGTCAGTCA
ACATGTGGTGTAGATGACGATGCAGCCGAGATCGCGTGATTGGCTTAACG
AAAGTTGGGGGTGCAAATTACGCCGGCTGGAACGAACCCATCCGTGTGTG
TGCGTATTTGTTTTTTTGCAAAACAGCTTGTGGAGTAGAAAAGCGTTAGT
CGTCTTCACGATACGACCGATGTCACGAGATCCGTCGCCGCTGACGCCTT
CGGAAAATCTACCTTTCTCTTAGGATCTTGCGCGATGGGGGGGGGGGGGG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGTGTACTCATAGTC
GTGCATGCCGTAGTTGTTAGACCATTGATCTCGCATTCCTACAAAGCCGG
GACGGAGCACGCCGGGTTCTCACCGGACCAGGCTCTCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTCTAGTTCTTTGCATGCCTT
AGCTGCTTGGCCATTGGCCACGCGTCCTCGAGAGGCGTCTTGGGTGGAGG
GCGCCTTGCATGTCTTGTGCAAAAGTCTGCCGTGCCAGCCTGCCGATGTT
TTTTTGGGTTGATGGGAGAGAGTGTTTGGGTGTTACCCTGCTGATGGAGA
AGGAAGATGGAAAGCGCACAAGGTGCTGCGAAGCAACCGAACAATTCAAC
CATTGTGGGCGGGTCTCGTGCGGGTTGGTGGGGTCCAGCAGCTTTGAACG
TGGCTGGATCAGAGTTGACTTTTGCGAGACGTGCTGTGGCTGGTTCACAG
CCCGAGAGGACGAGGCAAGAGCAAGAGACGAACCGCGCCCAAGAGTATTA
CGACGTGTATACCTCTCTGCACTCGAAATCCCACATGATCGGTTCGCCGC
CCAACGTTGCGCCCTCCATGCTCGGCGCGTGCCAGCCAGGTCAACCATGG
GAAAGGAGTCGAAAGCGTCCGAGGCACAGCCAGCGATGGCGACAGCAGTT
GCCGTCCCCGTCGAAGGCGGCGACGGCGGCGGCAGTACTGCCGGCGCACC
CGGCGCACACCAGCACCAACAACAAGACCACAACAACCAACATCAGAAAA
AGAAGCTGCAGCACAAGGGAGGAAGGGGCGGAGGAGGGAGGGGCGGTGGG
GGGAGGGGCGGAGGAGGAGGCACGGGCAAGGGGGGAGGGGGGGGGAGAGG
AAAAGGCGCCGGCAAGGGTGGCAGGAGAGCAGGGCACGGTGTAGACCATG
GCGGAGGCGTTTATTCCAAGGGCGGGGCCAAGGGTCCCCGGATGAGAGGC
AGCCACGTTGGGCCGGGAACGTTCGGCTGCGGGCGCCTCGGAATGCTCTT
CATGGCGTTTCGCTTCTTGCAGAGGAAGGTCGGCAAGAAGAACAAGAAGG
GCAACCACAACAACAACAGAAGACAACACGGTATGCTGCGTAGGTGGCAC
GTCAAGGGTGGTGGCCGTATGATGTCTTCAGGTGCAACGGAGCGAGTACA
TGAAGAGTTCAACGTTTTCCTCTCTGTTGCCTTCTCCAACTCTCCTCGGA
CGACGGCCCACACTCGTACTTTTTCGGCCGTGTGCACGCAGTGTCGTGTT
GTTCAAGTCAACGGCATATTGCGGGGCGTGTGAGTGCAAGAAATCGGTCG
CAAAGTACAAGACGAAGGGTGCGGTTGTGTTGGAATTGTTCACCTCGAAC
CGACACCGTGTGCGCTTGCTGTGTTTTGTTCGTTGAAACCAAAAGAAGAC
TGGTTGCGGAGTGAGGGTATAGATTAGGTCGCCAAGCTCGAGAACACTTG
ATGTGGCCGGTCCCACTTCAAACGAAGAATTTTCACTCTTGCCGTTCTCT
GAGCCCATTTTTTGTTCCCGTTACACATATCCTAGTGAACACCGCTGATC
AGAATCCCTGTCTAGGTTGTGTCGCCACGTGAAACTAGCTACGGGATTCC
TCTACATCACCTCAGGGCAGAATCACGAGCACGTCTTCCCACACAAATCA
CAACCCTCCCCCAACGTACTCCTAGTGCCCCCACCGGAGGGGGTGAGTGG
AAGTGCAGATCTCCCCCTTCGCAAGTCGCTAGGAAAACCAATGGTGGAGA
AGATTGGGGCGGCACCTCTTTCGCCCGTTCCTTGAGAGTGGTACTGATGA
TACTGATTTATTCCATGACATCAAGAAGACTTTCCAGCACACCGTCGCAA
CACCAAGGTAAAGGTTTTGTTTTGAAGTAGGATGCATCCCTTCCGGTCTC
AGGCGGCGGATTATACCGGCAAGGATGCATCGTACGGCGTGTGCTATACA
CCCCGCACTTTTCTGTGTCACGATCTGCTTTAGTTCGCATCTCTAATTTG
CTTGGTTTCTCGCCCTCCCGCCGCGTTGTGCGTACTCCGCATGTTTTCTT
CCCTTAACAGGAAACCCACACGGACTGCCGAACAACCAGCCTTACGCCTC
CGGGCAGCCGCAACCGTACGTGTCTAACGCGCAGCACGCGGGGGAAGAGA
AGGTCGAGGAGATGCCGGTGGCAGTTGGCGTACCCGTCGAGAAGTGAAAC
CGTCGCCGGAATAACCGCCGTTCGTGATACCGTCGTTTGCTCCTTTTTGG
GATCTGAATATGCGGGCATATCCACTGCGGTACCCATGAGCGTGGATGGA
GATCAACGTCGAAGGTGGTGCGGGTACTCGTCAACACTGAGATTGCTAAC
GTTTTGTGCATGATCTGAGTTGATTGTCGTTCGTTCGATTTAATATCGTG
TGCAGATTCGTGCTTCTTGAGCACCTCTTCAGGTTCTGGAAGAGCTCTTC
GTTGTGTATTTGGGTGTTCCTTGAGGGTCGCGACTTTTTAAGGAATGTTA
TGACGCGTTCGACCCTCCCCCCTACGTTGTTGGACGTACTCCTCCTATGC
TCGGAAGATTTTCTCTCGTATTCCATCGTCTTGAAGAAATTATTTTTTGG
CTTATGTAGAAAAAGTAGGTAACGTCTGTAGTTGTAGCTTATGACAGTCA
TTGTGGTCGTTGTCGACATGCTTAAGATGGTTTCTCCGTTGTTTCTTCTG
TTATTCACTTTATGATACAAAAGCTGGTTTTTCGTTCTGATGCAGGCCCT
GTAAGCATGATCGATCTTGGTGTGGGGGTTTAATTGCGGCGTTTTCTGGC
CAGAGCTAGAGATGTAAGAGGAAATGAATGTAAACGGGGTGTAAGTGTGC
GTCGTGGGGGTTAGTATGTAATCTGGACTTTGTTTTGAAACGCCGGTCAA
GCTTCAATTTTCCCTCCTTTCCTTAGACCCGCGCGCGTACTTTCACCAGC
TTGCGGTGTTCCTCGAGCTGGCCCTTGTAGGTGGTACAATACCTGCTGTG
TGTAGGGTGCATTTGT

Coding sequence (CDS) from alignment at Scaffold_614:17560..22875+

>EsuBft1051_5a-0001 ID=EsuBft1051_5a-0001|Name=EsuBft1051_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=582bp|location=Sequence derived from alignment at Scaffold_614:17560..22875+ (Ectocarpus subulatus male Bft15b)
ATGGCGACAGCAGTTGCCGTCCCCGTCGAAGGCGGCGACGGCGGCGGCAG
TACTGCCGGCGCACCCGGCGCACACCAGCACCAACAACAAGACCACAACA
ACCAACATCAGAAAAAGAAGCTGCAGCACAAGGGAGGAAGGGGCGGAGGA
GGGAGGGGCGGTGGGGGGAGGGGCGGAGGAGGAGGCACGGGCAAGGGGGG
AGGGGGGGGGAGAGGAAAAGGCGCCGGCAAGGGTGGCAGGAGAGCAGGGC
ACGGTGTAGACCATGGCGGAGGCGTTTATTCCAAGGGCGGGGCCAAGGGT
CCCCGGATGAGAGGCAGCCACGTTGGGCCGGGAACGTTCGGCTGCGGGCG
CCTCGGAATGCTCTTCATGGCGTTTCGCTTCTTGCAGAGGAAGGTCGGCA
AGAAGAACAAGAAGGGCAACCACAACAACAACAGAAGACAACACGGAAAC
CCACACGGACTGCCGAACAACCAGCCTTACGCCTCCGGGCAGCCGCAACC
GTACGTGTCTAACGCGCAGCACGCGGGGGAAGAGAAGGTCGAGGAGATGC
CGGTGGCAGTTGGCGTACCCGTCGAGAAGTGA