EsuBft1051_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1051_4a-0001
Unique NameEsuBft1051_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_614contigScaffold_614:24515..28731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FM20
ProteomeIdEsuBft1051_4
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length213
Hectar predicted targeting categoryother localisation
Evalue0.0
EggNOG OGs2ENCT@1|root,2SRUE@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_010340.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1051_4aEsuBft1051_4aEctocarpus subulatus male Bft15bgeneScaffold_614 24515..28731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1051_4a-0001EsuBft1051_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_614 24515..28731 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1051_4a-0001-exonagat-exon-99282Ectocarpus subulatus male Bft15bexonScaffold_614 24515..25691 -
EsuBft1051_4a-0001-exonagat-exon-99280Ectocarpus subulatus male Bft15bexonScaffold_614 25889..26118 -
EsuBft1051_4a-0001-exonEsuBft1051_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_614 26557..26817 -
EsuBft1051_4a-0001-exonagat-exon-99281Ectocarpus subulatus male Bft15bexonScaffold_614 27145..27438 -
EsuBft1051_4a-0001-exonagat-exon-99279Ectocarpus subulatus male Bft15bexonScaffold_614 28564..28731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1051_4a-0001-cdsEsuBft1051_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_614 24515..25691 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1051_4a-0001 ID=EsuBft1051_4a-0001|Name=EsuBft1051_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2130bp|location=Sequence derived from alignment at Scaffold_614:24515..28731- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGTAGAGAGTGCCTCGGGTCAGGTCTCATCGAGTAACGCCCCCGT
GCCCGCCGATGGAGAGTGGGCAGAACAAATCAGAGTCAAGGACGAGCTGA
TCTCTACGTTGAGACGGCAGCTGACGGCGCTGGGGGAGCAACCGGTTGAA
GAGGTTGTAACCCTAGAGGAGGCGAAGAAGCGTTTACGAGAGGCTATTGA
CGCCCTGATGACGGGGGACACGTCTGCCGAAATGGAGCTCGCCCTGGAAA
AATGGGACAAATATGTCACCAACCACCCCGATCACATCAAAGAGCAGGCC
GCCGAAGAGCAGGCATGGGAAGCAGCAAATGAGCAAAAAAACAACGAGGC
GCTCCATCTTATGAAGACTTTCGTTCCGCCCGACATCTTTCACGCTGGCC
TTGACGGTCTACGGGGAGGGGGGCTGACGCCGGCGCTCGCAAAGAGGATA
TTCGATCGCAAGGTTCTCTGGCTCATTCGCGCGCCAATCGGAATGGTGTC
AAAAACTCACGTGGTGGAGTTGAAGAGTAAATACCTGGCCAACGACCTAG
ATGTCGTAGAGAGTCGGGCCCTACATGCATGCCTGCCATTGACGTTCGAA
AACGACGCCGACGGGGCGAAAACGGCGTGGCGAGCCGGCTTTCGCAAGCG
ACTGAAAGAGTTGTTGGACAAGGAAACAGCAGGACAGCTAAAGCCGGCCG
AACTTAGGCGCCCCGTGTACAAGGACATAGAAAAAGGGCCGTTCGACCCC
GACGCAGCCGCCGAAGAGCAAGAAACCATGCGCAGCAGCGCGTTTGATGT
GTCGGAGAAGCCGGTTGTGGGTGGAAAGCTTAAGGCGTCCGCGATAGCCG
TCATAGGCGATGGACTAGGGGCGAAACTAAAGACTGGGCCACCCCCGCTA
GACATGATCGGCGACACGAAGGACAGCTCTGCAGGCGTTGATGGGATGAC
CAGGTCAGCTCCAAACTCGCCAGCATCAAAGTATCGACGACAAAGCTATG
CACTCTTGAGAGGTCAGCCGACCACTTGCTCGATGAAGAGCATGATGAGT
GAGCTGGGAAACCGCATCTCTCACAGAAGACAAAGCAAACGGCGGAGGTC
GTCATTCAATGGGGTTCACGACGTATCTCAGCTGCTTCGAGGCGCTTTCG
ATGACCGCATTGCGGAGAACGGAGGGCTACAGCCGAGTGTGGATGAAGCA
AGCTCGCAGGGATCGGATTATGATGCGGCGATCGAGCCACCAATTGATCC
TGCGCCGCTGCCGTCGACTCAGCCCTCCCAAGCCGCGAGGACGGCGCCAC
CGTCCGATCCAAAGTCGAGTGTCGACACAAAGAAGACGAGTCCGAACTCT
GGTGCGAGGACCGCCCCTCCGAGCATGAAGGACATGATGGCCGAGCTCGC
AGCTAAGGCGAAGGCCCGCGAGGATCGGTCTGCTTCACCGTTGGTGGACG
GCAATGCTGGGGCAGGTAACAACGTTGGGGTGGATTCTCCGATTGTTCCG
CAATCGATACCGCAGCCACCCGCCACTCCTCCACCCAATCCAAAGTCGAG
GGTTGACATCAAGAAGACGAGTCCGAACTCTGGTGCGAAGACCGCCCCTC
CGAGCATGAAGGACATGATGACCGAGCTCGCAGCCGAGGCGAAGGCCCGC
GAGGAACGGCCTGCTTCACCGTTGGAGGACGGAAACTCTGGGGCAGGTAA
CAACGTTGGGGCGGATTCTCCGATTGTTCCGCAAACGATACCGCAGCCAC
CCGCCACTCCTCCACCCGATCCAAAGTCGAGTGTCGACACCAAGAAGACG
AGCCCGAACTCTGGTGCGAAGACCGCCCCTCCGAGCATGAAGGACATGAT
GGCCGAGCTCGCAGCTAAGGCGAAGGCCCGCGAGGATCGGTCTGCTTCAC
CGTTGGAGGACGGCAATGCCGGGGCAGGTAACAACGTTGGAGCGGATTCT
CCGATTGTTCCGCAATCTATACCGCAGCCACCTGCCACTCCTCCACCCGA
TCCAAAGTCGAGTGTCGACACTAAGAAGACGAGTCCGAACTCTGATGCGA
AGACCGCCCCTCCGAGCATGAAGGACATGATGGCCGAGCTCGCAGCTAAG
GCGAAGGCCCGCGAGGAACGGTCTGCGTAA
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protein sequence of EsuBft1051_4a-0001

>EsuBft1051_4 ID=EsuBft1051_4|Name=EsuBft1051_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=709bp
MHVESASGQVSSSNAPVPADGEWAEQIRVKDELISTLRRQLTALGEQPVE
EVVTLEEAKKRLREAIDALMTGDTSAEMELALEKWDKYVTNHPDHIKEQA
AEEQAWEAANEQKNNEALHLMKTFVPPDIFHAGLDGLRGGGLTPALAKRI
FDRKVLWLIRAPIGMVSKTHVVELKSKYLANDLDVVESRALHACLPLTFE
NDADGAKTAWRAGFRKRLKELLDKETAGQLKPAELRRPVYKDIEKGPFDP
DAAAEEQETMRSSAFDVSEKPVVGGKLKASAIAVIGDGLGAKLKTGPPPL
DMIGDTKDSSAGVDGMTRSAPNSPASKYRRQSYALLRGQPTTCSMKSMMS
ELGNRISHRRQSKRRRSSFNGVHDVSQLLRGAFDDRIAENGGLQPSVDEA
SSQGSDYDAAIEPPIDPAPLPSTQPSQAARTAPPSDPKSSVDTKKTSPNS
GARTAPPSMKDMMAELAAKAKAREDRSASPLVDGNAGAGNNVGVDSPIVP
QSIPQPPATPPPNPKSRVDIKKTSPNSGAKTAPPSMKDMMTELAAEAKAR
EERPASPLEDGNSGAGNNVGADSPIVPQTIPQPPATPPPDPKSSVDTKKT
SPNSGAKTAPPSMKDMMAELAAKAKAREDRSASPLEDGNAGAGNNVGADS
PIVPQSIPQPPATPPPDPKSSVDTKKTSPNSDAKTAPPSMKDMMAELAAK
AKAREERSA
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mRNA from alignment at Scaffold_614:24515..28731-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1051_4a-0001 ID=EsuBft1051_4a-0001|Name=EsuBft1051_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4217bp|location=Sequence derived from alignment at Scaffold_614:24515..28731- (Ectocarpus subulatus male Bft15b)
ATGCATGTAGAGAGTGCCTCGGGTCAGGTCTCATCGAGTAACGCCCCCGT GCCCGCCGATGGAGAGTGGGCAGAACAAATCAGAGTCAAGGACGAGCTGA TCTCTACGTTGAGACGGCAGCTGACGGCGCTGGGGGAGCAACCGGTTGAA GAGGTTGTAACCCTAGAGGTAAGACTGAAGAAAGATCAGGAGCCTTACCT GTTGCTTCCACAAGTGTAGCGATGCGTTCGAACTTCCCATATCGTTCTTT GGTCTAGATGTTTTGTGTGCGTGGAGGCCGTGTGGTCTGCTCAGCCACGA TTACCCCATGTGGCGAATACACGCGCGTTTGCCGCCCCTCCCTTGGAATA ACTTACCAACCTAGGTTTGTTCGCGGGCATGGGTTTCCCTCCAATCCTCG CGTACAGTTAGCGTCCACAATTAAGAATATTGTTTTGAAGAAATAGAGCC TCACTTTTCCACGAAACATAGGAAAATAGGGTTAAGACACATGGCTCAGT CTGTGTCACACAAAAAGAAATGTCTCTAAAAAGAAACAGCGGCGACCGCT GCCCTACCACAAAAGAAACGAGGGGTTACGGGGGAGTGTGTCGAATAAGA AACACCCCACGCTCCTCCTATCTCTCGCATTCCCCCCTGTCCCACTACCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGT GCATTATTAGTTGTACGAGGAGGGGGAGTGAGAGTTATTATTTCGCGGCG CCCCCTCCGGGCCCCTGCCGTCTCTGGCGGGCTCTTGCCCTCCGGTTCTG GCATAGCACACTACACAGGCTGCGAACCAAGATGCGCCGTCTGCTGTACG GTTTTGATGATGCTCTGCGCCAGCTCTCGTGAGCAGAGAAAATAAGAAAT TGCCCATAAAAGAAATTCAGGAGGAATTGGCGGCACGAAAAAATAAAAAA CTTGACACAATAACTTGAACGACATACGCTGACTTTATACCCCACAAAAA AATTCGAGGCTAGACCTGAAATACGCGTTTCTTAATTGCGGGCGTTAACT GTATCAAAGGCACGCTTTCAGCAAAAACATACATGGTCTCTTTTCGTCGA ATTTAACCACGGGTTGCTACCAGATTTGACCCACAACTGCCACACCGCAC CTGGTCGTTTCGCCCTGTCTACCCACCGTTCCCTCCATCAAAGGAGGCGA AGAAGCGTTTACGAGAGGCTATTGACGCCCTGATGACGGGGGACACGTCT GCCGAAATGGAGCTCGCCCTGGAAAAATGGGACAAATATGTCACCAACCA CCCCGATCACATCAAAGAGCAGGCCGCCGAAGAGCAGGCATGGGAAGCAG CAAATGAGCAAAAAAACAACGAGGCGCTCCATCTTATGAAGACTTTCGTT CCGCCCGACATCTTTCACGCTGGCCTTGACGGTCTACGGGGAGGGGGGCT GACGCCGGCGCTCGCAAAGAGGATATTCGATCGCAAGGTAAAAAGGGTAT AGCGCATGCGTAGATACGGAGAAGGGGATATGCATGCAACATCATGACGC GCCTAGACGAAACAAATAGTGCAAGTGCATGCATCATGAAACTCCGTAGC CTATCGCCAAAGAAGCTTTGAAAGGCGCCCGCGTGGCCTCCTTTTCTTAG AGCATCCTTCATAGAGGTGTTTAGTACGTTCTTCTATCTTGTCGAGTAAC CAAGTATCCGTGGCACCATTTTCGTCTTTCGATAACGCTCGGCGACACAC CAATTCACCCAGTCCTTAAGGCTCTCTTCGCTCAGCTGCCCGCCCCCCCT CGCCAACTGTTCAGGTTCTCTGGCTCATTCGCGCGCCAATCGGAATGGTG TCAAAAACTCACGTGGTGGAGTTGAAGAGTAAATACCTGGCCAACGACCT AGATGTCGTAGAGAGTCGGGCCCTACATGCATGCCTGCCATTGACGTTCG AAAACGACGCCGACGGGGCGAAAACGGCGTGGCGAGCCGGCTTTCGCAAG CGACTGAAAGAGTTGTTGGACAAGGAAACAGCAGGACAGCTAAAGCCGGC CGAACTTAGGCGCCCCGTGTACAAGGTGAGTACCTATTGGAGTCAAGGCG AAATTTTTACGTCACTTGTAGGAACTACGGCAACGCCAGACGAGTTGGCG ACTCCATCAATTACACCACTGGGCGGAGTACATAAGTGCCTTCGCGCGGA TCGGTGTACAATGATGCTTTGTTTTAAAACAATTTGGATGAGCCTCACCA TCCATTCCCAAGCAGGAGTCTTCGATCGAATACTCGAAACCCGTGCACAA CATGCCTCAGATCCTTCACGGGGGAGGGACAACAATGCCGAAGCACTCGC TCGTAAGCTTTTGTGCGTAGCTCCTGGATTTGTGTGTGTACTGTACTTTC GGTGTTTTCCAGCTCGCCGGACCACCACATCCCAGATACTACTGAAGTCC GAGCCGTTTCTCTGTCGTCCGACGAAAAGCCTCTCGTCTCCGTGTTCGAA CGAAAATGGGCAGGACATAGAAAAAGGGCCGTTCGACCCCGACGCAGCCG CCGAAGAGCAAGAAACCATGCGCAGCAGCGCGTTTGATGTGTCGGAGAAG CCGGTTGTGGGTGGAAAGCTTAAGGCGTCCGCGATAGCCGTCATAGGCGA TGGACTAGGGGCGAAACTAAAGACTGGGCCACCCCCGCTAGACATGATCG GCGACACGAAGGACAGCTCTGCAGGCGTTGATGGGATGACCAGGTCAATT AGAGAGGGGAGACCCGCTTAGCACATGGATATGAGCCTGTAATTTCGTTG CTCAATGCTTGGTCATGCGTGGCAGAAAAACCCTTGACATGCACACCTTC TCCGCGGTATTAGCGATGTTGATGTTTGTCAGTGACTGAAAAAGCGGGTA TTTACATACCAACACCTGGTTACCTTTTGCATCATCACAGGTCAGCTCCA AACTCGCCAGCATCAAAGTATCGACGACAAAGCTATGCACTCTTGAGAGG TCAGCCGACCACTTGCTCGATGAAGAGCATGATGAGTGAGCTGGGAAACC GCATCTCTCACAGAAGACAAAGCAAACGGCGGAGGTCGTCATTCAATGGG GTTCACGACGTATCTCAGCTGCTTCGAGGCGCTTTCGATGACCGCATTGC GGAGAACGGAGGGCTACAGCCGAGTGTGGATGAAGCAAGCTCGCAGGGAT CGGATTATGATGCGGCGATCGAGCCACCAATTGATCCTGCGCCGCTGCCG TCGACTCAGCCCTCCCAAGCCGCGAGGACGGCGCCACCGTCCGATCCAAA GTCGAGTGTCGACACAAAGAAGACGAGTCCGAACTCTGGTGCGAGGACCG CCCCTCCGAGCATGAAGGACATGATGGCCGAGCTCGCAGCTAAGGCGAAG GCCCGCGAGGATCGGTCTGCTTCACCGTTGGTGGACGGCAATGCTGGGGC AGGTAACAACGTTGGGGTGGATTCTCCGATTGTTCCGCAATCGATACCGC AGCCACCCGCCACTCCTCCACCCAATCCAAAGTCGAGGGTTGACATCAAG AAGACGAGTCCGAACTCTGGTGCGAAGACCGCCCCTCCGAGCATGAAGGA CATGATGACCGAGCTCGCAGCCGAGGCGAAGGCCCGCGAGGAACGGCCTG CTTCACCGTTGGAGGACGGAAACTCTGGGGCAGGTAACAACGTTGGGGCG GATTCTCCGATTGTTCCGCAAACGATACCGCAGCCACCCGCCACTCCTCC ACCCGATCCAAAGTCGAGTGTCGACACCAAGAAGACGAGCCCGAACTCTG GTGCGAAGACCGCCCCTCCGAGCATGAAGGACATGATGGCCGAGCTCGCA GCTAAGGCGAAGGCCCGCGAGGATCGGTCTGCTTCACCGTTGGAGGACGG CAATGCCGGGGCAGGTAACAACGTTGGAGCGGATTCTCCGATTGTTCCGC AATCTATACCGCAGCCACCTGCCACTCCTCCACCCGATCCAAAGTCGAGT GTCGACACTAAGAAGACGAGTCCGAACTCTGATGCGAAGACCGCCCCTCC GAGCATGAAGGACATGATGGCCGAGCTCGCAGCTAAGGCGAAGGCCCGCG AGGAACGGTCTGCGTAA
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Coding sequence (CDS) from alignment at Scaffold_614:24515..28731-

>EsuBft1051_4a-0001 ID=EsuBft1051_4a-0001|Name=EsuBft1051_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2130bp|location=Sequence derived from alignment at Scaffold_614:24515..28731- (Ectocarpus subulatus male Bft15b)
ATGCATGTAGAGAGTGCCTCGGGTCAGGTCTCATCGAGTAACGCCCCCGT
GCCCGCCGATGGAGAGTGGGCAGAACAAATCAGAGTCAAGGACGAGCTGA
TCTCTACGTTGAGACGGCAGCTGACGGCGCTGGGGGAGCAACCGGTTGAA
GAGGTTGTAACCCTAGAGGAGGCGAAGAAGCGTTTACGAGAGGCTATTGA
CGCCCTGATGACGGGGGACACGTCTGCCGAAATGGAGCTCGCCCTGGAAA
AATGGGACAAATATGTCACCAACCACCCCGATCACATCAAAGAGCAGGCC
GCCGAAGAGCAGGCATGGGAAGCAGCAAATGAGCAAAAAAACAACGAGGC
GCTCCATCTTATGAAGACTTTCGTTCCGCCCGACATCTTTCACGCTGGCC
TTGACGGTCTACGGGGAGGGGGGCTGACGCCGGCGCTCGCAAAGAGGATA
TTCGATCGCAAGGTTCTCTGGCTCATTCGCGCGCCAATCGGAATGGTGTC
AAAAACTCACGTGGTGGAGTTGAAGAGTAAATACCTGGCCAACGACCTAG
ATGTCGTAGAGAGTCGGGCCCTACATGCATGCCTGCCATTGACGTTCGAA
AACGACGCCGACGGGGCGAAAACGGCGTGGCGAGCCGGCTTTCGCAAGCG
ACTGAAAGAGTTGTTGGACAAGGAAACAGCAGGACAGCTAAAGCCGGCCG
AACTTAGGCGCCCCGTGTACAAGGACATAGAAAAAGGGCCGTTCGACCCC
GACGCAGCCGCCGAAGAGCAAGAAACCATGCGCAGCAGCGCGTTTGATGT
GTCGGAGAAGCCGGTTGTGGGTGGAAAGCTTAAGGCGTCCGCGATAGCCG
TCATAGGCGATGGACTAGGGGCGAAACTAAAGACTGGGCCACCCCCGCTA
GACATGATCGGCGACACGAAGGACAGCTCTGCAGGCGTTGATGGGATGAC
CAGGTCAGCTCCAAACTCGCCAGCATCAAAGTATCGACGACAAAGCTATG
CACTCTTGAGAGGTCAGCCGACCACTTGCTCGATGAAGAGCATGATGAGT
GAGCTGGGAAACCGCATCTCTCACAGAAGACAAAGCAAACGGCGGAGGTC
GTCATTCAATGGGGTTCACGACGTATCTCAGCTGCTTCGAGGCGCTTTCG
ATGACCGCATTGCGGAGAACGGAGGGCTACAGCCGAGTGTGGATGAAGCA
AGCTCGCAGGGATCGGATTATGATGCGGCGATCGAGCCACCAATTGATCC
TGCGCCGCTGCCGTCGACTCAGCCCTCCCAAGCCGCGAGGACGGCGCCAC
CGTCCGATCCAAAGTCGAGTGTCGACACAAAGAAGACGAGTCCGAACTCT
GGTGCGAGGACCGCCCCTCCGAGCATGAAGGACATGATGGCCGAGCTCGC
AGCTAAGGCGAAGGCCCGCGAGGATCGGTCTGCTTCACCGTTGGTGGACG
GCAATGCTGGGGCAGGTAACAACGTTGGGGTGGATTCTCCGATTGTTCCG
CAATCGATACCGCAGCCACCCGCCACTCCTCCACCCAATCCAAAGTCGAG
GGTTGACATCAAGAAGACGAGTCCGAACTCTGGTGCGAAGACCGCCCCTC
CGAGCATGAAGGACATGATGACCGAGCTCGCAGCCGAGGCGAAGGCCCGC
GAGGAACGGCCTGCTTCACCGTTGGAGGACGGAAACTCTGGGGCAGGTAA
CAACGTTGGGGCGGATTCTCCGATTGTTCCGCAAACGATACCGCAGCCAC
CCGCCACTCCTCCACCCGATCCAAAGTCGAGTGTCGACACCAAGAAGACG
AGCCCGAACTCTGGTGCGAAGACCGCCCCTCCGAGCATGAAGGACATGAT
GGCCGAGCTCGCAGCTAAGGCGAAGGCCCGCGAGGATCGGTCTGCTTCAC
CGTTGGAGGACGGCAATGCCGGGGCAGGTAACAACGTTGGAGCGGATTCT
CCGATTGTTCCGCAATCTATACCGCAGCCACCTGCCACTCCTCCACCCGA
TCCAAAGTCGAGTGTCGACACTAAGAAGACGAGTCCGAACTCTGATGCGA
AGACCGCCCCTCCGAGCATGAAGGACATGATGGCCGAGCTCGCAGCTAAG
GCGAAGGCCCGCGAGGAACGGTCTGCGTAA
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