EsuBft1050_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1050_7a-0001
Unique NameEsuBft1050_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_265contigScaffold_265:117264..119900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LHK0
ProteomeIdEsuBft1050_7
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSignalP-TM
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsG3DSA
Protein domainsSSF55620
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsIPR007115
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length109
Hectar predicted targeting categorysignal peptide
Evalue7.66e-116
EggNOG OGs2CYMG@1|root,2S557@2759|Eukaryota
Ec32 ortholog description6-pyruvoyl tetrahydropterin synthase/QueD family protein
Ec32 orthologEc-10_002190.1
Date last modified2016-06-14
Date creation2016-06-14
Description6-pyruvoyl tetrahydropterin synthase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_7aEsuBft1050_7aEctocarpus subulatus male Bft15bgeneScaffold_265 117264..119900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_7a-0001EsuBft1050_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_265 117827..119860 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_7a-0001-exonEsuBft1050_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_265 117264..117958 -
EsuBft1050_7a-0001-exonagat-exon-21578Ectocarpus subulatus male Bft15bexonScaffold_265 119037..119222 -
EsuBft1050_7a-0001-exonagat-exon-21579Ectocarpus subulatus male Bft15bexonScaffold_265 119690..119900 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_7a-0001-exonagat-three_prime_utr-502Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_265 117264..117826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_7a-0001-cdsEsuBft1050_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_265 117827..117958 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_7a-0001-exonagat-five_prime_utr-308Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_265 119861..119900 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1050_7a-0001 ID=EsuBft1050_7a-0001|Name=EsuBft1050_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1092bp|location=Sequence derived from alignment at Scaffold_265:117264..119900- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAGAGAGAGAGAGAGAGAGAGATCGACAGAGGTAGTGACGATGATGAGGC
TGTTGGCGATTGTGTGGGTGTGTTTGATGGCGGTGCTCACGTCTGCCCAC
AACCCGACGGCGGGAGGCGGAGGCGGCCACCAGGGATACTCCCTGGGCAT
CCGAGACTCGATCATGATCGCTCACAGCTTTGAGGGATCGCAGTTCGGGC
CTGCCCAAGAGATGCATGGGGCGACGTACACGGTCGATGCCGAGTTCAAG
ACGGAGGCCCTCGTGGAAAAGTCCAACTGGGTCGTGGACATAGGCGCCGC
CTCGGAGATGCTCGCTGCGGTGCTGTCCAAGTACAACTTCAAGAACCTCA
ACGAGATCTTCCCCGGACAAAACACAACCACCGAGTTCATGTGCAAGGTG
ATATTCGACGAGCTCGCAGCTAAGTGCGGCAAGGACTTCCACGGCACTCT
TTGCATCAAGCTGTGGGAGAGCCACAAGGCATGGGGGTGCTACGAGGGGG
ACATTGGCGAAGAGGTGGACGAGGCATGATGATGGCAGCCCACGCGTCGT
CGTTGGATAGCAACCCTGAGGGCCGGAGGGAGAGGAAGGATGCAGTACAG
TACACGTGGGGCGACGCTCTTTGTAGGTAGCACAACATTTTTTTGGTTGC
ACCCCTTCGGCCAGACGGTTCCAAGCCAGATGTTTCAGCCCTGTCGTAGG
GTCCTTTGTTCACACGTGGTGTGGAGAGCAACACGTAGATTCGGGAGGGA
TTGGAGCACCCTGCCGCTGTTGATTATTTCGAGACGCCCCTGTTTCCGGG
TCGCGTACCACGTGAAGATGTTCCTGGGTTTGCGACAACACCCTGCGCGT
TTATTTTTGACGGTGTAGCAGCGTCTCCACGTCGCTTCTTGTTCGACGCA
CCTGTGGGTGGTAAACTGGTAGGCCCGATGGGTGCCGGTGCTGTGCGAAT
TCCGAGCTTGCAGGCCACAGAGGCCCGGGTTGGGTGAATGTTTGGCCGTG
CTTAGTCCATGGGGGCTCCGTGATATGTATATCTCGAGGTACATGGGTGC
TGCCGCGTACTCCCTTCAACCATGAAAAAAAGTATCTGCCCT
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protein sequence of EsuBft1050_7a-0001

>EsuBft1050_7 ID=EsuBft1050_7|Name=EsuBft1050_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=162bp
MMRLLAIVWVCLMAVLTSAHNPTAGGGGGHQGYSLGIRDSIMIAHSFEGS
QFGPAQEMHGATYTVDAEFKTEALVEKSNWVVDIGAASEMLAAVLSKYNF
KNLNEIFPGQNTTTEFMCKVIFDELAAKCGKDFHGTLCIKLWESHKAWGC
YEGDIGEEVDEA
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mRNA from alignment at Scaffold_265:117264..119900-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1050_7a-0001 ID=EsuBft1050_7a-0001|Name=EsuBft1050_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2637bp|location=Sequence derived from alignment at Scaffold_265:117264..119900- (Ectocarpus subulatus male Bft15b)
GAGAGAGAGAGAGAGAGAGAGATCGACAGAGGTAGTGACGATGATGAGGC
TGTTGGCGATTGTGTGGGTGTGTTTGATGGCGGTGCTCACGTCTGCCCAC
AACCCGACGGCGGGAGGCGGAGGCGGCCACCAGGGATACTCCCTGGGCAT
CCGAGACTCGATCATGATCGCTCACAGCTTTGAGGGATCGCAGTTCGGGC
CTGCCCAAGAGGTGCGTTTGTTCCCCCAAAGCGCAGACTGTTTAGCTGAC
TTAACGCCACCCAAGAGCAATTGGGGGCTGGGCTGCTGTAGTCTATGTAC
TGGCACGCGGGTGCGGCCTCCAACAGGAGACGATGAGGCTTGGGCCGCTA
ATGTACATGGTAATAGGTGATTGCCCACCTGTCCTGTCATCCCCGGTCTG
TTATCCTTCGCATGTCAAAGGAACCAACCTCTTGTTGCAGAGGCGGATCG
CAATCTCTCTCTCGTTTTGTTTCTCTCGACATTGCCCGATGCTGTATGAT
CTACCGACTGAGCCAAACACACTCAGGGGTCCCCTGGCAGTGCGAAATCC
TTGTCAGCTACGGCTGCCTGCAGGCTACCGCTGTGTGCCACGTTTTACGT
TTTGAAACTTGTCACCATGAGAGAGGACATGACTGGCGGCATCGTGTGCA
TCTCGCAAACCTCGGGACTCCCGTTCAGATGCATGGGGCGACGTACACGG
TCGATGCCGAGTTCAAGACGGAGGCCCTCGTGGAAAAGTCCAACTGGGTC
GTGGACATAGGCGCCGCCTCGGAGATGCTCGCTGCGGTGCTGTCCAAGTA
CAACTTCAAGAACCTCAACGAGATCTTCCCCGGACAAAACACAACCACCG
AGTTCATGTGCAAGGTACTGAAGGGTGGCAATCGAAAGTCGTGCTGCTGC
GTCGGTTTTTCTCTCCCCAGATATCATGTTGTGGTGGTACTTTCGACAGC
AGTGTGGTGGACGCACCGGCGTACGCGCTTTTCACGTTTGCAGCACTCTT
GACGCTGAAGTGTGGTGAGTGCCGGGGCGGAATGACATTTCCGAGACTCA
TCCTTTCATCCAATTAGAGCGATAACTCCGAATCCGTGGTGTGCATACGC
CCGCCCACGTTCTCCCGAAACGCATGCCGAAACAGGTGATCGACAAGTAA
CCATATCCCTCGCCAACGGGTTGGGGTGGTGGTAAAGACAACATTCGTTC
ATAGTTTGCGAGGCTAGCGTCGATCGCTGTACCTGGCTGAGTGTTTGCTT
TTCTGCCGAGTTGTACTACCGAAACGCCGCTTAGGTTGGCAACCGTTTTT
CCGTTGATTCGTCGGTGAACCGCGGTGGAGCCTAGAGATCAAACGTCGGT
GCGGGTAGCTGCTGCTTTTGGTAGCGGTTGTGCGTGCTCACACTAGTTCT
GGCCGGGTCGTTCGCCAGCCATTTTTCTCGACTGGTTGAAGTCTACATAA
ACTGACCAAGAAGATGACTGAGGGAGACAAGGAGCAACAGCGGTCATTGC
TGATGTTCACCGTATTGTGTGGCCATCGGCACGCTGCAGCCGCACTCATC
GACACTGAAAACAGGCTTGGATGCCCATTTTGTGATTCCTGCACGGAGAA
CCCCAGAGAGACGCAAGACGTTGAACGTTTGATTCCAACCTGTTTTTTCT
TGCACTACTCTCGAGTCCATGCTACCATGAAACCCATGCCAAGCAATGCC
TTTGCCTGCTTGCTTCTACCTCTTTTCTCTATCAAACATTTTGCCGGACG
GAGTTGGTAACGAAATAAGCCGTCTCCTGGGTGGAGTGAAGCACTGCTCA
GATCGAACTTTTTGGCAGGGCTCGTGTTGGATTCAGCACCATGCGGGTAC
ATGCCGACGCCTTACTTCCACCGAGAACGAAAAGAGGCTCGCCGACCGTG
CTGACTGCTGTTGTTGGTTGGCGCTATGCTTGTTTTTGGCAGGTGATATT
CGACGAGCTCGCAGCTAAGTGCGGCAAGGACTTCCACGGCACTCTTTGCA
TCAAGCTGTGGGAGAGCCACAAGGCATGGGGGTGCTACGAGGGGGACATT
GGCGAAGAGGTGGACGAGGCATGATGATGGCAGCCCACGCGTCGTCGTTG
GATAGCAACCCTGAGGGCCGGAGGGAGAGGAAGGATGCAGTACAGTACAC
GTGGGGCGACGCTCTTTGTAGGTAGCACAACATTTTTTTGGTTGCACCCC
TTCGGCCAGACGGTTCCAAGCCAGATGTTTCAGCCCTGTCGTAGGGTCCT
TTGTTCACACGTGGTGTGGAGAGCAACACGTAGATTCGGGAGGGATTGGA
GCACCCTGCCGCTGTTGATTATTTCGAGACGCCCCTGTTTCCGGGTCGCG
TACCACGTGAAGATGTTCCTGGGTTTGCGACAACACCCTGCGCGTTTATT
TTTGACGGTGTAGCAGCGTCTCCACGTCGCTTCTTGTTCGACGCACCTGT
GGGTGGTAAACTGGTAGGCCCGATGGGTGCCGGTGCTGTGCGAATTCCGA
GCTTGCAGGCCACAGAGGCCCGGGTTGGGTGAATGTTTGGCCGTGCTTAG
TCCATGGGGGCTCCGTGATATGTATATCTCGAGGTACATGGGTGCTGCCG
CGTACTCCCTTCAACCATGAAAAAAAGTATCTGCCCT
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Coding sequence (CDS) from alignment at Scaffold_265:117264..119900-

>EsuBft1050_7a-0001 ID=EsuBft1050_7a-0001|Name=EsuBft1050_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=489bp|location=Sequence derived from alignment at Scaffold_265:117264..119900- (Ectocarpus subulatus male Bft15b)
ATGATGAGGCTGTTGGCGATTGTGTGGGTGTGTTTGATGGCGGTGCTCAC
GTCTGCCCACAACCCGACGGCGGGAGGCGGAGGCGGCCACCAGGGATACT
CCCTGGGCATCCGAGACTCGATCATGATCGCTCACAGCTTTGAGGGATCG
CAGTTCGGGCCTGCCCAAGAGATGCATGGGGCGACGTACACGGTCGATGC
CGAGTTCAAGACGGAGGCCCTCGTGGAAAAGTCCAACTGGGTCGTGGACA
TAGGCGCCGCCTCGGAGATGCTCGCTGCGGTGCTGTCCAAGTACAACTTC
AAGAACCTCAACGAGATCTTCCCCGGACAAAACACAACCACCGAGTTCAT
GTGCAAGGTGATATTCGACGAGCTCGCAGCTAAGTGCGGCAAGGACTTCC
ACGGCACTCTTTGCATCAAGCTGTGGGAGAGCCACAAGGCATGGGGGTGC
TACGAGGGGGACATTGGCGAAGAGGTGGACGAGGCATGA
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