EsuBft1050_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1050_6a-0001
Unique NameEsuBft1050_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_265contigScaffold_265:112368..115601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1050_6
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon8
Length107
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_002330.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_6aEsuBft1050_6aEctocarpus subulatus male Bft15bgeneScaffold_265 112368..115601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_6a-0001EsuBft1050_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_265 112368..115601 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_6a-0001-exonagat-exon-21576Ectocarpus subulatus male Bft15bexonScaffold_265 112368..112715 +
EsuBft1050_6a-0001-exonagat-exon-21575Ectocarpus subulatus male Bft15bexonScaffold_265 112761..112808 +
EsuBft1050_6a-0001-exonagat-exon-21571Ectocarpus subulatus male Bft15bexonScaffold_265 112934..113117 +
EsuBft1050_6a-0001-exonagat-exon-21572Ectocarpus subulatus male Bft15bexonScaffold_265 114385..114597 +
EsuBft1050_6a-0001-exonagat-exon-21577Ectocarpus subulatus male Bft15bexonScaffold_265 114685..114927 +
EsuBft1050_6a-0001-exonagat-exon-21573Ectocarpus subulatus male Bft15bexonScaffold_265 115121..115132 +
EsuBft1050_6a-0001-exonagat-exon-21574Ectocarpus subulatus male Bft15bexonScaffold_265 115370..115388 +
EsuBft1050_6a-0001-exonEsuBft1050_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_265 115592..115601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_6a-0001-cdsEsuBft1050_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_265 112368..112715 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1050_6a-0001 ID=EsuBft1050_6a-0001|Name=EsuBft1050_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1077bp|location=Sequence derived from alignment at Scaffold_265:112368..115601+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGGCCTCGTCAGGCTGTTCGCATTCACCGCCCGGCGCATGGCATT
GATAGTGGCAGCCACGTGGCATGCTTACCTGCAGAGAAAGGTCTCTGGAA
TCGTCGCCTCTGCCTTGCGAAGGCCTTTTGCCAGGCTCCAGGCAGAGCTC
ACGTCTGCCCTTCCTAGGCTGTGGGGAGCCGTCTCGAACTTGAACCCGCG
GCTGGGTCGGGTGAAGGAACTCCACCGATGCGCCATGAACGCCCGCGGCG
CCATGTGCCGCAAGGCACGTCAGCTGGATGAAACCGTTGAATGGCTGACA
GAAACGGTTTTGAATCTCGAGGCGATAATCAGCGAGACACGCCGGCTGGC
GATCATCAGCGGTGGGGCGGCTCAGCTTAACCATGTAACCACCTTGGATG
GCGGAAGAGCACGCCCGCGCTGTGGCCAGGCTTTGGGCCGAGTGCGAGGC
AAGGGATGCGGCGCTTCGAGACGAATGCGAAACAAGAATCGCGGCAGCGT
GCGCAAGAATGGCGGCCGAGATTCGGGCCGACTTCGATGCCAGGCTACTG
GCCAATGCCGACTGGAGATAGCTACAACAGGTGAACCCTTTTTACAGAAT
CACTTCACGTACGAACAAACTCAGACAACGCCAGCCGCAGGCGGAAGGCT
GAGGTTGGATCCTGAGAAACCTTGTCACCCAACTGTGCGGAGAGTACTCA
TCATGAGCGAGGTCTGCCGGCACCTACACGATGACGGCCTCAAGCACGAG
CGCCGCGGTCGTGAAAACTGCAAACTGTCCAAGAACGGGCAGGGTGCACT
GTTCACCAACACTAGTACGCTTTGCATGTGTGCGAGGGATGAGATCGCGG
TGTACCTGTCCAACGGGTCGGCAACGTCAGCTGCCTCCGAGGGTGAAGGC
ACAACGCACCTGCAGCAGCAACAGCAGCATAAGGTCCTGCCGGCTCCTGC
CGGCACCACGTCCGCGGACTCGAGGGCTGAAGCCCGTAGTGCTGCCGCCC
ACGTTGACGCGCCTCTTGCTCCGAACTGGAGCAAGCGCCACGTGGGAGCG
GCACCAAAAAGACTCGGGAAGAGATAG
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protein sequence of EsuBft1050_6a-0001

>EsuBft1050_6 ID=EsuBft1050_6|Name=EsuBft1050_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=358bp
MVGLVRLFAFTARRMALIVAATWHAYLQRKVSGIVASALRRPFARLQAEL
TSALPRLWGAVSNLNPRLGRVKELHRCAMNARGAMCRKARQLDETVEWLT
ETVLNLEAIISETRRLAIISGGAAQLNHVTTLDGGRARPRCGQALGRVRG
KGCGASRRMRNKNRGSVRKNGGRDSGRLRCQATGQCRLEIATTGEPFLQN
HFTYEQTQTTPAAGGRLRLDPEKPCHPTVRRVLIMSEVCRHLHDDGLKHE
RRGRENCKLSKNGQGALFTNTSTLCMCARDEIAVYLSNGSATSAASEGEG
TTHLQQQQQHKVLPAPAGTTSADSRAEARSAAAHVDAPLAPNWSKRHVGA
APKRLGKR
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mRNA from alignment at Scaffold_265:112368..115601+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1050_6a-0001 ID=EsuBft1050_6a-0001|Name=EsuBft1050_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3234bp|location=Sequence derived from alignment at Scaffold_265:112368..115601+ (Ectocarpus subulatus male Bft15b)
ATGGTCGGCCTCGTCAGGCTGTTCGCATTCACCGCCCGGCGCATGGCATT
GATAGTGGCAGCCACGTGGCATGCTTACCTGCAGAGAAAGGTCTCTGGAA
TCGTCGCCTCTGCCTTGCGAAGGCCTTTTGCCAGGCTCCAGGCAGAGCTC
ACGTCTGCCCTTCCTAGGCTGTGGGGAGCCGTCTCGAACTTGAACCCGCG
GCTGGGTCGGGTGAAGGAACTCCACCGATGCGCCATGAACGCCCGCGGCG
CCATGTGCCGCAAGGCACGTCAGCTGGATGAAACCGTTGAATGGCTGACA
GAAACGGTTTTGAATCTCGAGGCGATAATCAGCGAGACACGCCGGCTGGT
TGCAACGGTGGAATGGCTGGCAACATAAATTGTGAACCTCCAGGCGATCA
TCAGCGGTGGGGCGGCTCAGCTTAACCATGTAACCACCTTGGTAAACGGC
CTGCTCACCGCTGCTGCCCGGGCGAGGCGAGAGCTTGACGACGCAAGGCA
GGAGGTCGTCGACGTGAAACTGCAGAGGGCCGCGGACTAGATCACATCGA
TGGCGGAGATCGATAGGATGGCGGAAGAGCACGCCCGCGCTGTGGCCAGG
CTTTGGGCCGAGTGCGAGGCAAGGGATGCGGCGCTTCGAGACGAATGCGA
AACAAGAATCGCGGCAGCGTGCGCAAGAATGGCGGCCGAGATTCGGGCCG
ACTTCGATGCCAGGCTACTGGCCAATGCCGACTGGAGATAGCTACAACAG
GTAGAGACACCAGGAGGAGGGGGTCGAGATGGCGGAGTGGGGACGTGAAG
GAGTTACTGGGACTGTAGACTGTTTGTTTGTTTGTTGTTGTCGTATTGTA
GTAGTGTTGTAGTTTGGCTCGTACCCCGTGCTGTGTGTGTGTAGCTCAGC
AATCGCTTGATGAGTGCGCTGCGCCCTCGCGGCGAGGCTCGCAGACATTT
GGCTTGGCTGCGGTCTGTTGTAAGTTTCCATGTGAAAAGAGACGCGACCG
AAGTTTCGGCAAGTGTTGCCATCAACCTCGTGGTCAATGTCCCGGGCCTT
CTTTCAGCCTTTTCTCTTTTTTTTTGTTTTGCCGCTGTGGAAGAATATGA
TCTACGTAACAAACAGCTTGTGCGAAAGGTTTCGTTTGCACAAAGCTCAC
ACGTGGTGTGCGATACTCGCGCCCGCTCGTATCCCCAAGGTAGCAGGGGA
AAAGATTAGTCCGTGCGACGGAGCATATTGACGTTTGACGTTTTCGTGTA
GTGCTGCAGTCCTCCTTGTTGAAGCGACAGATCAACAGCTCATCTACACG
TCATGCAAGCCATCGTGCGCAACGGTACTTCGACGCACACACGACCACAC
ACGAACCACGACTTCGCTCGCTATCTTTATGGCTCTTATTTCCTATTTTG
CCACATTTTGATGGCACGGTTGTGATATACCAGAAGGCCGTTTGTGGGAA
ACGTATTGACAAGGTGCCGCGCTCGTCGTGCCCTAGGCTACATAATGTAC
AATCAATCGTCCTCCTCGTCGTTGCCCATTAAGTGGTCCGAAAGCTAATC
TCAGGTCCCGAGTGTGACACGGATTTCTTAGCGCACTTGGTACACCACTT
TTTTTCCGACAAACGCCGACGAGGGAAGGATGTTCGCCGTCTCCCTTGCT
GCAAGAATTGCAAAACAAACACCGCGGCGGATACAAGGTTCTGTGTGGTT
TCGACTGGAACACGCCTTGACCCCGGCGTTTGGAAAGGACTGGGACATAA
AACCAATCACGATCCGATGAACACACTGTGTAAGCAGCCTGGACAACAGT
TCAGACGTATTGGTTTACTGCCTTGACTGACTGCAACTTCACATCGTGTC
TGCACACACACGCGCGAACAATCACACTTGCACAGCGCAGACATGTAGTA
ACAATTCTGTTCTATCGTTGTTTGTCCGCGCCTTCGCAGACCGTGCAAAC
TTGCTGACAGTAACCAATCCCACTACCTCATTTCCTGTTCGCTCCAAAAA
CTCCTCCGGGGCCACAGGTGAACCCTTTTTACAGAATCACTTCACGTACG
AACAAACTCAGACAACGCCAGCCGCAGGCGGAAGGCTGAGGTTGGATCCT
GAGAAACCTTGTCACCCAACTGTGCGGAGAGTACTCATCATGAGCGAGGT
CTGCCGGCACCTACACGATGACGGCCTCAAGCACGAGCGCCGCGGTCGTG
AAAACTGCAAACTGTCCAAGAACGGGCAGGGTGACACGTGACGACGCGCT
GGAGTCGTCCCCCTCCGGAGGCGAATTGGGTGGAGGAGGGGGGGGGGGCA
TCAACACCAAGAAACAGGTGCACTGTTCACCAACACTAGTACGCTTTGCA
TGTGTGCGAGGGATGAGATCGCGGTGTACCTGTCCAACGGGTCGGCAACG
TCAGCTGCCTCCGAGGGTGAAGGCACAACGCACCTGCAGCAGCAACAGCA
GCATAAGGTCCTGCCGGCTCCTGCCGGCACCACGTCCGCGGACTCGAGGG
CTGAAGCCCGTAGTGCTGCCGCCCACGTTGACGCGCCTCTTGCTCCGAAC
TGGAGCAAGCGTACGCGCCCAACAACAGGATATGTAAGTGTTAGGGTTTT
GCCAAATATTCGTCCTTGCCCTGGTGATGTGATGTACGAGGCGCGTTTGC
CGGCGCCACATACACGGCGTCTGACATTCTTACCCAGAGCGTAGTTCGGG
CGAGAGTGGCAACCTTTCCAGGGCACCTCGAGGTCTGATTTTACTTCCCG
TAGGCCACGTGGGAGGTGAGTGCCTTTTGCGGGATCATTTCTCCAATGAC
TATCGTTCGAGAATGCTGAAAAGCTGCACGACCAGGCCGGCTGTGTGTCA
TGTATGTCGTCCATGTTCAGCGAAGCACGTTCACGCCCTTGCTCCTACGC
TGTTATTGCGCGTCTCTTGTGTTTCTCTGGCTGGGCCCTAGATGGGGCGT
ATTGACCCGGCGTCGTGTGGTCCAGCGAAACAACCAGACTACACGTCAAC
AGCGGCACCAAAAAGACTCGGGTGAGTCAATTAGCATATCACACATAGCA
CTCCCGTCTCGTCGACCTACCCCACCGTCGTGTTGAAAATGGGTAGCTAG
TCATCTCATGTTGGTGCTGTGGGTGTGACATTGTGACGCGCGCCTCAGTG
GTGAGCTTTGCCATACGAACAGGGTCACACGCTTGTTATGTATGGGACAA
AAGGACGCCAACAACGCAACGCAGGAAGAGATAG
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Coding sequence (CDS) from alignment at Scaffold_265:112368..115601+

>EsuBft1050_6a-0001 ID=EsuBft1050_6a-0001|Name=EsuBft1050_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1077bp|location=Sequence derived from alignment at Scaffold_265:112368..115601+ (Ectocarpus subulatus male Bft15b)
ATGGTCGGCCTCGTCAGGCTGTTCGCATTCACCGCCCGGCGCATGGCATT
GATAGTGGCAGCCACGTGGCATGCTTACCTGCAGAGAAAGGTCTCTGGAA
TCGTCGCCTCTGCCTTGCGAAGGCCTTTTGCCAGGCTCCAGGCAGAGCTC
ACGTCTGCCCTTCCTAGGCTGTGGGGAGCCGTCTCGAACTTGAACCCGCG
GCTGGGTCGGGTGAAGGAACTCCACCGATGCGCCATGAACGCCCGCGGCG
CCATGTGCCGCAAGGCACGTCAGCTGGATGAAACCGTTGAATGGCTGACA
GAAACGGTTTTGAATCTCGAGGCGATAATCAGCGAGACACGCCGGCTGGC
GATCATCAGCGGTGGGGCGGCTCAGCTTAACCATGTAACCACCTTGGATG
GCGGAAGAGCACGCCCGCGCTGTGGCCAGGCTTTGGGCCGAGTGCGAGGC
AAGGGATGCGGCGCTTCGAGACGAATGCGAAACAAGAATCGCGGCAGCGT
GCGCAAGAATGGCGGCCGAGATTCGGGCCGACTTCGATGCCAGGCTACTG
GCCAATGCCGACTGGAGATAGCTACAACAGGTGAACCCTTTTTACAGAAT
CACTTCACGTACGAACAAACTCAGACAACGCCAGCCGCAGGCGGAAGGCT
GAGGTTGGATCCTGAGAAACCTTGTCACCCAACTGTGCGGAGAGTACTCA
TCATGAGCGAGGTCTGCCGGCACCTACACGATGACGGCCTCAAGCACGAG
CGCCGCGGTCGTGAAAACTGCAAACTGTCCAAGAACGGGCAGGGTGCACT
GTTCACCAACACTAGTACGCTTTGCATGTGTGCGAGGGATGAGATCGCGG
TGTACCTGTCCAACGGGTCGGCAACGTCAGCTGCCTCCGAGGGTGAAGGC
ACAACGCACCTGCAGCAGCAACAGCAGCATAAGGTCCTGCCGGCTCCTGC
CGGCACCACGTCCGCGGACTCGAGGGCTGAAGCCCGTAGTGCTGCCGCCC
ACGTTGACGCGCCTCTTGCTCCGAACTGGAGCAAGCGCCACGTGGGAGCG
GCACCAAAAAGACTCGGGAAGAGATAG
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