EsuBft1050_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1050_5a-0001
Unique NameEsuBft1050_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_265contigScaffold_265:98584..99675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FZS4
ProteomeIdEsuBft1050_5
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length73
Hectar predicted targeting categoryother localisation
Evalue8.25e-34
EggNOG OGs2D50F@1|root,2SWWM@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_5aEsuBft1050_5aEctocarpus subulatus male Bft15bgeneScaffold_265 98584..99675 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_5a-0001-exonEsuBft1050_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_265 98584..98624 +
EsuBft1050_5a-0001-exonagat-exon-21569Ectocarpus subulatus male Bft15bexonScaffold_265 98777..99040 +
EsuBft1050_5a-0001-exonagat-exon-21570Ectocarpus subulatus male Bft15bexonScaffold_265 99250..99675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_5a-0001-cdsEsuBft1050_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_265 98584..98624 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_5a-0001-exonagat-three_prime_utr-501Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_265 99518..99675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_5a-0001EsuBft1050_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_265 98584..99517 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1050_5a-0001 ID=EsuBft1050_5a-0001|Name=EsuBft1050_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=731bp|location=Sequence derived from alignment at Scaffold_265:98584..99675+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACAGGCGTCCGCCATCTTGACCTTCGTGTCGCTAGAGATTGCTGA
TGGACTTCACCCCATCAAGCACAGCGAGGTTGCGGCGCTTCCGGTCGGCG
TGACCGGTAAAGTGGTTCGGGCGTGGGTGCGTGATTTTGTCAACGGCAAG
AGGTTCAAGGTTCGCGTGCGGGACTACGCTGCTCGCAACCTGCTCTCGGT
AATCAACGACGAGGACTTTCGCGAAGAGTCGCGCGAGTGGCTGGACGCCA
AGATATACGGCCGCAAGGAGGGGGAGCCGCAGCTACGTGTTCGGGACTTC
CAGAAGCATCTCAACGACACCGCGCTCAAGCCTTACATGGAAGAGGGTGC
GCGGGGAAATTGCCTCGACACGGTGCACAGATGGCTGCAGGACTTGGGCT
TCCGTTGGCGGCGACACCGAAAGTGTGTCTACGCAGACGGTCACAACCGC
CCCGACAACATCAGGAGGAGGATGGGTTACGTGACGGAGATGCAGGAGCA
CCAGAAGCGTACAGTCAAGTGCGTATTGAATTTGTGGTGTGATTGGGTCT
GCAATGTTTCCGATTTCGTGTAAGGTTTCCACCGTGGAACCGACAACTTA
CTTTTTTTTCAAGTTTAGATGTCGTTCAAGTTTGAGCATTTACGCGAACA
TACAACCTTGCGCAGGGACCTCTTGTTTAATCTCTCGTCCCGCCACCTTG
ACCTGCAGGCTCGCAAAGATCGGTGAGGGCC
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protein sequence of EsuBft1050_5a-0001

>EsuBft1050_5 ID=EsuBft1050_5|Name=EsuBft1050_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=190bp
MRQASAILTFVSLEIADGLHPIKHSEVAALPVGVTGKVVRAWVRDFVNGK
RFKVRVRDYAARNLLSVINDEDFREESREWLDAKIYGRKEGEPQLRVRDF
QKHLNDTALKPYMEEGARGNCLDTVHRWLQDLGFRWRRHRKCVYADGHNR
PDNIRRRMGYVTEMQEHQKRTVKCVLNLWCDWVCNVSDFV
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mRNA from alignment at Scaffold_265:98584..99675+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1050_5a-0001 ID=EsuBft1050_5a-0001|Name=EsuBft1050_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1092bp|location=Sequence derived from alignment at Scaffold_265:98584..99675+ (Ectocarpus subulatus male Bft15b)
ATGAGACAGGCGTCCGCCATCTTGACCTTCGTGTCGCTAGAGTAAGTTAT
GTTTTTCGCGTGTGTGATGGATGCGTGCTACAGCAGTGGGTACGCAAACA
GTTTACAACCCGCTAAATTCCACGTTGTCGAATACGCATCCCCTGAATTA
GTCACGACTATCTTGCCAAATGTGTTTGCGTTTGGCGGACCAGGATTGCT
GATGGACTTCACCCCATCAAGCACAGCGAGGTTGCGGCGCTTCCGGTCGG
CGTGACCGGTAAAGTGGTTCGGGCGTGGGTGCGTGATTTTGTCAACGGCA
AGAGGTTCAAGGTTCGCGTGCGGGACTACGCTGCTCGCAACCTGCTCTCG
GTAATCAACGACGAGGACTTTCGCGAAGAGTCGCGCGAGTGGCTGGACGC
CAAGATATACGGCCGCAAGGAGGGGGAGCCGCAGCTACGTGTTCGGGACT
TCCAGAAGTGAGTATGGAATGTAAACAACGTCATGGTTAGGATTCTATTT
CAGAGTTTGTCGGTTGGCGATTAGCGATGCATGCTGGTGTCGAAACATTC
CCACGATTTGCAATAGATGTTTACATCCCAGGTCGTTGAAAGATATGCAG
AAGAACCGTGTGTCGATTGTTGCACAGCAACTTATGTTGCACCATTATTT
TTGATCAAAATCGCAGGCATCTCAACGACACCGCGCTCAAGCCTTACATG
GAAGAGGGTGCGCGGGGAAATTGCCTCGACACGGTGCACAGATGGCTGCA
GGACTTGGGCTTCCGTTGGCGGCGACACCGAAAGTGTGTCTACGCAGACG
GTCACAACCGCCCCGACAACATCAGGAGGAGGATGGGTTACGTGACGGAG
ATGCAGGAGCACCAGAAGCGTACAGTCAAGTGCGTATTGAATTTGTGGTG
TGATTGGGTCTGCAATGTTTCCGATTTCGTGTAAGGTTTCCACCGTGGAA
CCGACAACTTACTTTTTTTTCAAGTTTAGATGTCGTTCAAGTTTGAGCAT
TTACGCGAACATACAACCTTGCGCAGGGACCTCTTGTTTAATCTCTCGTC
CCGCCACCTTGACCTGCAGGCTCGCAAAGATCGGTGAGGGCC
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Coding sequence (CDS) from alignment at Scaffold_265:98584..99675+

>EsuBft1050_5a-0001 ID=EsuBft1050_5a-0001|Name=EsuBft1050_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=573bp|location=Sequence derived from alignment at Scaffold_265:98584..99675+ (Ectocarpus subulatus male Bft15b)
ATGAGACAGGCGTCCGCCATCTTGACCTTCGTGTCGCTAGAGATTGCTGA
TGGACTTCACCCCATCAAGCACAGCGAGGTTGCGGCGCTTCCGGTCGGCG
TGACCGGTAAAGTGGTTCGGGCGTGGGTGCGTGATTTTGTCAACGGCAAG
AGGTTCAAGGTTCGCGTGCGGGACTACGCTGCTCGCAACCTGCTCTCGGT
AATCAACGACGAGGACTTTCGCGAAGAGTCGCGCGAGTGGCTGGACGCCA
AGATATACGGCCGCAAGGAGGGGGAGCCGCAGCTACGTGTTCGGGACTTC
CAGAAGCATCTCAACGACACCGCGCTCAAGCCTTACATGGAAGAGGGTGC
GCGGGGAAATTGCCTCGACACGGTGCACAGATGGCTGCAGGACTTGGGCT
TCCGTTGGCGGCGACACCGAAAGTGTGTCTACGCAGACGGTCACAACCGC
CCCGACAACATCAGGAGGAGGATGGGTTACGTGACGGAGATGCAGGAGCA
CCAGAAGCGTACAGTCAAGTGCGTATTGAATTTGTGGTGTGATTGGGTCT
GCAATGTTTCCGATTTCGTGTAA
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