EsuBft1050_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1050_4a-0001
Unique Name	EsuBft1050_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_265	contig	Scaffold_265:97442..98421 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1050_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	98
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1050_4a	EsuBft1050_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_265 97442..98421 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1050_4a-0001-exon	EsuBft1050_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_265 97442..98421 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1050_4a-0001-cds	EsuBft1050_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_265 97442..98050 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1050_4a-0001-exon	agat-three_prime_utr-500	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_265 98051..98421 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1050_4a-0001	EsuBft1050_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_265 97442..98050 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_265:97442..98421+
coding sequence from alignment at Scaffold_265:97442..98421+

spliced messenger RNA

>EsuBft1050_4a-0001 ID=EsuBft1050_4a-0001|Name=EsuBft1050_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=980bp|location=Sequence derived from alignment at Scaffold_265:97442..98421+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCTGCAGCTCGGGGAGCTCCTTNTCCGGCAGCACTTTCGCCCCC
ACCTCTAGAGACCGAAAGCAAGGTGGGACAGTTTGAGGACGGGGCGGTTG
TGTTCGAGGTTGAGGGAGGTGGAGACGACGGTGACGAGCTCTGCAATTGG
TTTGGACAAGATGCCATGGAGCAGGTGGATGTGTGTCTGGACGCGTGCAG
TTCCGCGTCTGAGGGGCTCATCTTTGGGGGATACGCTGGCGACTCGGCTG
ACTGCACGTCGTCAGAAGAGTCCAACATGGAGTGGAGCGACGTGGAGCAG
AAGTTGGAGCAGACGCCGAAGCAGCCGTCGCAGGGAGTGTTGCAGAATCC
CGATCGGTGCGCAGATCGAGATTCCGCCGAACTGTTGCCGAACAGCGGAA
ATCATGCCGCATCCAGCCGGCGGCTACTGCCGCGGCGCGGGCGCGGAAAC
CGCGGCCAAAGGGCTTGCCAGCTGGCCCAGGAAGAGGAAAGAAGGAGAAG
CAATGTAACCCCAAGCGCAGGAGAGTGTCTCGCAAGGAGCAACGAAGGCG
GGAGAGGAGGTCGAAGAAATCCGGGAGACGGCGCGCAGTGCGGGAAGCGG
CGCGTTTGAAGGTGCAGCAAGAGCGGCTAGAGATCTTCGAACAGGCGAAG
GGTATTCTTTTTCCGGTGAGCAGCGTTAGGAGTAGACACAACAATGGTGT
TCATGACTACTGCTGTGTGGACTTTGCAGCTGTGATGTTGCCGCATCTGC
TTTCATTTGTGGCAAGGGTGAAAAAATATCCCCAGCTTTGCCGACTCTCT
CGTGTGTGAGTGTGTGTGTGAAGGCAGGGGCCTGTTTTGTGTCGTTTTGT
GTGTAGTGACAGCAGGTGGTGCGTGCTTTCATGTGATCACAGCCCCATGA
AGATATGCCTAGATAAAAACATGGGTGGTTGCGTTTTTTAAGTTGAAAAT
TCACGCACATGTTCAAATTGGTGGGGCTGC

protein sequence of EsuBft1050_4a-0001

>EsuBft1050_4 ID=EsuBft1050_4|Name=EsuBft1050_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=202bp
MAAAARGAPXPAALSPPPLETESKVGQFEDGAVVFEVEGGGDDGDELCNW
FGQDAMEQVDVCLDACSSASEGLIFGGYAGDSADCTSSEESNMEWSDVEQ
KLEQTPKQPSQGVLQNPDRCADRDSAELLPNSGNHAASSRRLLPRRGRGN
RGQRACQLAQEEERRRSNVTPSAGECLARSNEGGRGGRRNPGDGAQCGKR
RV

mRNA from alignment at Scaffold_265:97442..98421+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1050_4a-0001 ID=EsuBft1050_4a-0001|Name=EsuBft1050_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=980bp|location=Sequence derived from alignment at Scaffold_265:97442..98421+ (Ectocarpus subulatus male Bft15b)
ATGGCAGCTGCAGCTCGGGGAGCTCCTTNTCCGGCAGCACTTTCGCCCCC
ACCTCTAGAGACCGAAAGCAAGGTGGGACAGTTTGAGGACGGGGCGGTTG
TGTTCGAGGTTGAGGGAGGTGGAGACGACGGTGACGAGCTCTGCAATTGG
TTTGGACAAGATGCCATGGAGCAGGTGGATGTGTGTCTGGACGCGTGCAG
TTCCGCGTCTGAGGGGCTCATCTTTGGGGGATACGCTGGCGACTCGGCTG
ACTGCACGTCGTCAGAAGAGTCCAACATGGAGTGGAGCGACGTGGAGCAG
AAGTTGGAGCAGACGCCGAAGCAGCCGTCGCAGGGAGTGTTGCAGAATCC
CGATCGGTGCGCAGATCGAGATTCCGCCGAACTGTTGCCGAACAGCGGAA
ATCATGCCGCATCCAGCCGGCGGCTACTGCCGCGGCGCGGGCGCGGAAAC
CGCGGCCAAAGGGCTTGCCAGCTGGCCCAGGAAGAGGAAAGAAGGAGAAG
CAATGTAACCCCAAGCGCAGGAGAGTGTCTCGCAAGGAGCAACGAAGGCG
GGAGAGGAGGTCGAAGAAATCCGGGAGACGGCGCGCAGTGCGGGAAGCGG
CGCGTTTGAAGGTGCAGCAAGAGCGGCTAGAGATCTTCGAACAGGCGAAG
GGTATTCTTTTTCCGGTGAGCAGCGTTAGGAGTAGACACAACAATGGTGT
TCATGACTACTGCTGTGTGGACTTTGCAGCTGTGATGTTGCCGCATCTGC
TTTCATTTGTGGCAAGGGTGAAAAAATATCCCCAGCTTTGCCGACTCTCT
CGTGTGTGAGTGTGTGTGTGAAGGCAGGGGCCTGTTTTGTGTCGTTTTGT
GTGTAGTGACAGCAGGTGGTGCGTGCTTTCATGTGATCACAGCCCCATGA
AGATATGCCTAGATAAAAACATGGGTGGTTGCGTTTTTTAAGTTGAAAAT
TCACGCACATGTTCAAATTGGTGGGGCTGC

Coding sequence (CDS) from alignment at Scaffold_265:97442..98421+

>EsuBft1050_4a-0001 ID=EsuBft1050_4a-0001|Name=EsuBft1050_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=609bp|location=Sequence derived from alignment at Scaffold_265:97442..98421+ (Ectocarpus subulatus male Bft15b)
ATGGCAGCTGCAGCTCGGGGAGCTCCTTNTCCGGCAGCACTTTCGCCCCC
ACCTCTAGAGACCGAAAGCAAGGTGGGACAGTTTGAGGACGGGGCGGTTG
TGTTCGAGGTTGAGGGAGGTGGAGACGACGGTGACGAGCTCTGCAATTGG
TTTGGACAAGATGCCATGGAGCAGGTGGATGTGTGTCTGGACGCGTGCAG
TTCCGCGTCTGAGGGGCTCATCTTTGGGGGATACGCTGGCGACTCGGCTG
ACTGCACGTCGTCAGAAGAGTCCAACATGGAGTGGAGCGACGTGGAGCAG
AAGTTGGAGCAGACGCCGAAGCAGCCGTCGCAGGGAGTGTTGCAGAATCC
CGATCGGTGCGCAGATCGAGATTCCGCCGAACTGTTGCCGAACAGCGGAA
ATCATGCCGCATCCAGCCGGCGGCTACTGCCGCGGCGCGGGCGCGGAAAC
CGCGGCCAAAGGGCTTGCCAGCTGGCCCAGGAAGAGGAAAGAAGGAGAAG
CAATGTAACCCCAAGCGCAGGAGAGTGTCTCGCAAGGAGCAACGAAGGCG
GGAGAGGAGGTCGAAGAAATCCGGGAGACGGCGCGCAGTGCGGGAAGCGG
CGCGTTTGA