EsuBft1050_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1050_2a-0001
Unique NameEsuBft1050_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_265contigScaffold_265:76313..77573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1050_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length66
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_2aEsuBft1050_2aEctocarpus subulatus male Bft15bgeneScaffold_265 76313..77573 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_2a-0001-exonEsuBft1050_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_265 76313..76343 -
EsuBft1050_2a-0001-exonagat-exon-21556Ectocarpus subulatus male Bft15bexonScaffold_265 76651..77047 -
EsuBft1050_2a-0001-exonagat-exon-21555Ectocarpus subulatus male Bft15bexonScaffold_265 77340..77573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_2a-0001-cdsEsuBft1050_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_265 76313..76343 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_2a-0001-exonagat-five_prime_utr-307Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_265 77389..77573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1050_2a-0001EsuBft1050_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_265 76313..77388 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1050_2a-0001 ID=EsuBft1050_2a-0001|Name=EsuBft1050_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=662bp|location=Sequence derived from alignment at Scaffold_265:76313..77573- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTCTCTCTCTCTCTCTGGTACCACGAATGCCTCACCCCGAGCGATGGGC
AATCTAACAGTGTCCTACTCGTTTGATCAGTGCCCTTCCGGTGCCTTTCA
GTAGGCAACACAACAACATTACAAACACGCAGGATCGGATGCGATCCGGC
AAACGCGGCTGAACGCATGTTGCTGAAGATACAAAATGCACATCAACAGC
ACATACATCATGCAACGTCTAGCACTGCCGTCAGCGCTACACACGCAGTT
CACGTCAACAATAATGGACGACATGGACGACGTAGCCGCGTTCTGGCAGC
ACCATGCTGAGGGTTTCTGTCCACAGGGCAACCCGCTCAAAGTTTGGGAA
GAATTACTGCTCATAGCAGCACAAACGCCTGATCGTTTCCGCGAAGCTTT
GCAAGCGGCCGCAGTCGCTGTTGGTGCTCGGTACTGCAACCACGATACTC
CGCCGGGTCCGCTCCCTGATATCAGAAAACTGCCGGAGAGGCAGGCCGCC
GTACAGCAACACGCTGGATTATGCGGAAAGTACCACGCGGAACACATCGC
CAACATCGGCGTCACCATGGTGGAAGAAAGGGCAGCAGGAGCTGAGATCA
CAACGAAAAGAATAAGGAATCAGGTGTGTGTTACGCCGACGGGCGTGTTG
GCGGATCAGTAA
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protein sequence of EsuBft1050_2a-0001

>EsuBft1050_2 ID=EsuBft1050_2|Name=EsuBft1050_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=158bp
MHINSTYIMQRLALPSALHTQFTSTIMDDMDDVAAFWQHHAEGFCPQGNP
LKVWEELLLIAAQTPDRFREALQAAAVAVGARYCNHDTPPGPLPDIRKLP
ERQAAVQQHAGLCGKYHAEHIANIGVTMVEERAAGAEITTKRIRNQVCVT
PTGVLADQ
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mRNA from alignment at Scaffold_265:76313..77573-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1050_2a-0001 ID=EsuBft1050_2a-0001|Name=EsuBft1050_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1261bp|location=Sequence derived from alignment at Scaffold_265:76313..77573- (Ectocarpus subulatus male Bft15b)
TCTCTCTCTCTCTCTCTGGTACCACGAATGCCTCACCCCGAGCGATGGGC
AATCTAACAGTGTCCTACTCGTTTGATCAGTGCCCTTCCGGTGCCTTTCA
GTAGGCAACACAACAACATTACAAACACGCAGGATCGGATGCGATCCGGC
AAACGCGGCTGAACGCATGTTGCTGAAGATACAAAATGCACATCAACAGC
ACATACATCATGCAACGTCTAGCACTGCCGTCAGGTCATAAACGAGCCTT
TGCCGCCATTGAGGACGTAGTCCTATCCCTTGCAAGGGCTGAGGCACAAT
CGCGCGGCGAAAGATCGCGCATGGCCCTCTGCTAAGCACGCCAGAACAGG
TGTCACCCAGTGTAAAAAATCAGTATGGATTTTTTACAAAAGCCACGCGG
GACCGCTATCCATACTAAATTAGACAAGGGTGAGAGATAGATGGAGAGGG
AGAGTGTACTGAAAAAGTCCCGCATGCCTTCAACGCCGATAGCGATGTCG
ATACCCCACGGAGCCCCTCTGGCCAGCGCTACACACGCAGTTCACGTCAA
CAATAATGGACGACATGGACGACGTAGCCGCGTTCTGGCAGCACCATGCT
GAGGGTTTCTGTCCACAGGGCAACCCGCTCAAAGTTTGGGAAGAATTACT
GCTCATAGCAGCACAAACGCCTGATCGTTTCCGCGAAGCTTTGCAAGCGG
CCGCAGTCGCTGTTGGTGCTCGGTACTGCAACCACGATACTCCGCCGGGT
CCGCTCCCTGATATCAGAAAACTGCCGGAGAGGCAGGCCGCCGTACAGCA
ACACGCTGGATTATGCGGAAAGTACCACGCGGAACACATCGCCAACATCG
GCGTCACCATGGTGGAAGAAAGGGCAGCAGGAGCTGAGATCACAACGAAA
AGAATAAGGAATCAGGTGTGTGTGTATTGGACTGCTGGTTGTGGGGTATG
CACTGCTGTGCATGTGTGCCAGGAAATGTGTTCGAGGCCAGAGTGGTGGT
GGGAGTGCCACACGAACGACATCTATCTGTCTGTGGCCTGCTGACACTTT
AGGCCGGAAAGAGAGGCACGTTGTGTTGTTGTGTTGAATACTTCACATAT
ACGACCTGCAGCTGTTGACACAACTTCGACACCGCGAGAGAATCGGTGTT
TTTAGCCTTTGACGTTGTTGGTGTCCTGCTGCTGTCAGCAGGCAAAGAAG
CTTGTGATGAAAGCTTATTTGTGCGGGAAGTACGCCGACGGGCGTGTTGG
CGGATCAGTAA
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Coding sequence (CDS) from alignment at Scaffold_265:76313..77573-

>EsuBft1050_2a-0001 ID=EsuBft1050_2a-0001|Name=EsuBft1050_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=477bp|location=Sequence derived from alignment at Scaffold_265:76313..77573- (Ectocarpus subulatus male Bft15b)
ATGCACATCAACAGCACATACATCATGCAACGTCTAGCACTGCCGTCAGC
GCTACACACGCAGTTCACGTCAACAATAATGGACGACATGGACGACGTAG
CCGCGTTCTGGCAGCACCATGCTGAGGGTTTCTGTCCACAGGGCAACCCG
CTCAAAGTTTGGGAAGAATTACTGCTCATAGCAGCACAAACGCCTGATCG
TTTCCGCGAAGCTTTGCAAGCGGCCGCAGTCGCTGTTGGTGCTCGGTACT
GCAACCACGATACTCCGCCGGGTCCGCTCCCTGATATCAGAAAACTGCCG
GAGAGGCAGGCCGCCGTACAGCAACACGCTGGATTATGCGGAAAGTACCA
CGCGGAACACATCGCCAACATCGGCGTCACCATGGTGGAAGAAAGGGCAG
CAGGAGCTGAGATCACAACGAAAAGAATAAGGAATCAGGTGTGTGTTACG
CCGACGGGCGTGTTGGCGGATCAGTAA
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