EsuBft104_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft104_9a-0001
Unique NameEsuBft104_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_255contigScaffold_255:498237..498580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog90675.XP_010506885.1
ProteomeIdEsuBft104_9
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon1
Max annot lvl35493|Streptophyta
Length344
Evalue7.71e-11
EggNOG OGsCOG2801@1|root,COG5285@1|root,KOG0017@2759|Eukaryota,KOG3290@2759|Eukaryota,37PY8@33090|Viridiplantae,3GG3P@35493|Streptophyta,3HYAG@3699|Brassicales
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K00477
KEGG Pathwayko04146,map04146
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016705,GO:0016706,GO:0044464,GO:0048244,GO:0051213,GO:0055114,GO:0071944
EC1.14.11.18
DescriptionPhytanoyl-CoA dioxygenase (PhyH)
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft104_9aEsuBft104_9aEctocarpus subulatus male Bft15bgeneScaffold_255 498237..498580 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_9a-0001-exonEsuBft104_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_255 498237..498580 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_9a-0001-exonagat-five_prime_utr-306Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_255 498237..498406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_9a-0001-cdsEsuBft104_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_255 498407..498580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_9a-0001EsuBft104_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_255 498407..498580 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft104_9a-0001 ID=EsuBft104_9a-0001|Name=EsuBft104_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=344bp|location=Sequence derived from alignment at Scaffold_255:498237..498580+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCAGCAGACCGTAGGTCGGTATCAGGGGGGATCGTGACGTGCGGAGAGGC
GCCGTGTCTTGGTTTTCCAGAACGCAGAAGTGTGTCACGCTTTTGACCAC
CGAAGCAGAGTACGTCGCGCTAGGTGACGTAGTGAAGGAGATTTTGTTTT
TGAGGCAGATTTGGCGTTTCATGTTGCCGCAGGTCGGCATGCCGTGTATC
CCCATCTTCGAGGACAACCAGGGGGCGATTCAACTAGCGCAGAACCCCAT
CTCAAACTCGAACTCGAAGCACATAGATGTAAGGCACCATTTTCTCAGGA
AACTGGTAGAGAGAAAGGAAATTTTGGTCATCCACGTGCCNNNN
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protein sequence of EsuBft104_9a-0001

>EsuBft104_9 ID=EsuBft104_9|Name=EsuBft104_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=58bp
MLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRKLVERKE
ILVIHVPX
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mRNA from alignment at Scaffold_255:498237..498580+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft104_9a-0001 ID=EsuBft104_9a-0001|Name=EsuBft104_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=344bp|location=Sequence derived from alignment at Scaffold_255:498237..498580+ (Ectocarpus subulatus male Bft15b)
GCAGCAGACCGTAGGTCGGTATCAGGGGGGATCGTGACGTGCGGAGAGGC
GCCGTGTCTTGGTTTTCCAGAACGCAGAAGTGTGTCACGCTTTTGACCAC
CGAAGCAGAGTACGTCGCGCTAGGTGACGTAGTGAAGGAGATTTTGTTTT
TGAGGCAGATTTGGCGTTTCATGTTGCCGCAGGTCGGCATGCCGTGTATC
CCCATCTTCGAGGACAACCAGGGGGCGATTCAACTAGCGCAGAACCCCAT
CTCAAACTCGAACTCGAAGCACATAGATGTAAGGCACCATTTTCTCAGGA
AACTGGTAGAGAGAAAGGAAATTTTGGTCATCCACGTGCCNNNN
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Coding sequence (CDS) from alignment at Scaffold_255:498237..498580+

>EsuBft104_9a-0001 ID=EsuBft104_9a-0001|Name=EsuBft104_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=174bp|location=Sequence derived from alignment at Scaffold_255:498237..498580+ (Ectocarpus subulatus male Bft15b)
ATGTTGCCGCAGGTCGGCATGCCGTGTATCCCCATCTTCGAGGACAACCA
GGGGGCGATTCAACTAGCGCAGAACCCCATCTCAAACTCGAACTCGAAGC
ACATAGATGTAAGGCACCATTTTCTCAGGAAACTGGTAGAGAGAAAGGAA
ATTTTGGTCATCCACGTGCCNNNN
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