EsuBft104_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft104_7a-0001
Unique NameEsuBft104_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_255contigScaffold_255:512939..517034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FH67
ProteomeIdEsuBft104_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length259
Hectar predicted targeting categoryother localisation
Evalue6.72e-54
EggNOG OGs2D5TW@1|root,2SZNI@2759|Eukaryota
Ec32 ortholog descriptionHaemerythrin/HHE cation-binding motif
Ec32 orthologEc-13_000960.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionHemerythrin HHE cation binding domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft104_7aEsuBft104_7aEctocarpus subulatus male Bft15bgeneScaffold_255 512939..517034 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_7a-0001-exonagat-exon-6684Ectocarpus subulatus male Bft15bexonScaffold_255 512939..515232 -
EsuBft104_7a-0001-exonEsuBft104_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_255 516730..517034 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_7a-0001-exonagat-three_prime_utr-496Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_255 512939..514949 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_7a-0001-cdsEsuBft104_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_255 514950..515232 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_7a-0001-exonagat-five_prime_utr-304Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_255 516744..517034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_7a-0001EsuBft104_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_255 514950..516743 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft104_7a-0001 ID=EsuBft104_7a-0001|Name=EsuBft104_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2599bp|location=Sequence derived from alignment at Scaffold_255:512939..517034- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GACCTAGAGGGGCAGATTAGGTACGACGAAGGAGCCACCGAGGGCCATAT
GCTGGAGGTCTTCAGACGCCGTTCGTGATGGGATTGTTTTTGTTGTTGTT
CCTGCTGCTGCTGTCGTTCTTGTCGTCATCGTCGTCTTGACACTATCGAA
CCCGCTCCGAACTCTGTTCTGTACTTGTACTTTTCTGTTCTCTTCATCCC
CACCGGTCCAAGTGACGCCATTACAATTACCACGAAAAGAGCACGTAGTG
CCAAACATCAAGAGAAAACAGTACCGGCCTTGGAGGGAAGTATGACAAGG
GTCTTGGACCTAGAAGCCGACCATTCCGAAACGAACCTCGGAAACGAGGC
CCTCGACCGCGTCAGGAACCTTCGGTCGGCCCCCACAACGGCCGGAGCGG
TTAGCGGCGGCGCTGATGTCGCCTCCGCCCAGGCCGTGGTGGTCGCCCTC
AAGGCGTACGCCGAGAGCCTGGAGATCCACCTGGAGAGGGAGGAGAGGGT
TCTGGTCGCCAGGTGGCTCAATCTCAGCGCCGAAATGTACGCCAAGTACC
GTACGTACCTGGTGGGAAAGTACCGCCTTGTGTACTAAAGGCGCGTGCGT
GTGTGTGTGACTCGGATTTTTTGTGTGTAAATTTGGAGAGCGAGGTTCAT
TCTAGTGCGTCGTCGGGGGGTGACTCATTGCCGTGCATGCCGGAGGGCGT
TAGGCCGTTGGCCTCTCACAGAGCCGGGGCGGAAGACGCCGAGTTTTTCC
CGCCAGACAAGGCTAGCGAATTCATCACGTGCGAAGCGCCGGGAGGTATT
CGGCGAGTCGCATGGAGGGTGCGCTGCATCCTGCTAAGGGTGTTCGGCAT
CTTGTGCCTTCTTCCTTGCATACGGGTGACAGCTGCGTATGACTTCATTT
ATTTTCTGATGCTTTCACTTCCACCGAAAGGCTTACGCACTGAGTAGTTG
CTTCGAGGGAAGGGCAGGGGGGAGCGATTGACAGCGCGGTGGCAATGAGG
CTTTCACGACGCGCGTCTGATGGTCGGCGTGCGGTGCGGCCGTTGTCCTT
TTATACATTCCTTGGAATGTTTTGGTCAGGCTCCAACGTTTTTTTCTGTT
TCTGTGTAGGACACATCGTGGGAAGGGTTGTGTCTGACCGACCTACCTTG
AGCGATGATGTTCCACATAGCGCTTCCGTGTTCGTTTTTTTTCTGCGTTG
GACACCGGTTGGGGATGGGACTTACCTGCCCGCACGAGCTTGAGCTTCGC
GGTTGACTATATAGCGCAGCATGTGTGCGTCGTCAACGTGGTCCGCAAGG
TAATCGGGGGAAAAGACGTTGGCTTTAAAGTGGTTATCTTCTAGTTGCCA
TCACGCCGGGCACAGGCCTGTAGTCAAGCATCGAACGCAAGACAGCGGTA
GGTACCACATGTTGCTACGCACGCTGTTCTGGGTTATGAGTTGTGGGTTG
TGACGCATGTTGCTTCGTCATTTCCCACGACCAGCTGTATGTTAGGCTAC
CTTGCCGTTCGTGTATGAAGGGGTGGGTGGCGGTGTTTGGTGAATCCTGC
GAGAAGGAAGTTTGGAGATGGAGAGAGATACATACCGAGATGCGGGCCGG
CATGTTGCTCTATCGCTGGCGCTCGAGGCAAGAAGTATCGAGATGTGAGT
TCAGTTATGGGAATCGTTATTGTGCTTTCGAAAAACGCAACACACATGCG
CCTCTAGCCACGAACATAGCGTCTGGGAAACGTTTTTGCCCTTGTGCGTT
CGTACGGGACTGTCAGCCAACGGTCATTCTAGGCGTGGCCCGTCAAGGTT
CGACTTCATACTACGTAGCTTGTTTTCCGGTCGGCGGTGGGTTGCCGGTT
ATCCACTACATATGAAGGAAGTAGTAGAGTTGGAATTGACCCATTTTGTG
AGCTTTGATGACATGACCAGCTGAGAGCCAATGGGTTGAATTCCTGTTGC
TGTCGTCATGTTATATTTTCTCAGCGCTCTCGAATGCACCAGCCTTTCGT
GTCGCTACAATACAGGCCACAAAGGGAGGAGAGAGGTCTTGAGAAATAAG
CCCAAGTCTACCTCAACACACATGCTTCTAACCGAGGCTGCCAATCAACG
GCGGCGATACGTAGACTCATTGTGGCGTCGGAACTCCTCATACATTGTGT
CCCCCGGTAGTCCGCTCGGCTCGCTACGACGACGAGAGTTTGCAGTTTTC
ATCCGTGGCGGTCGACCACAGAGGGGACCGTGCTGTGAACGGGTGTACCC
GGACCACGCAATAACGTCCATACGTGACGTGGATTAGGTTTCGCATACCG
CCTTGTGTGAGCACGGTTCAGCACGCATTGTGGGCTACCTTTGCGGAAGA
CACCGTAGTGACTGCGCCGAATGTTACATGGTTGGTTCGCTGGAGGCTCA
GACTAAGTGTATTGAGGCAATCGTTGGCAATGTTCGCTGAAAGACCGTGA
TGGCCCTTTGGTTGCGGCGAGAAGGCTATCTCTGTCTATGTTGCTTCGGT
GTCTTGATTTCGTTGACCGCGAAATAGAGGTTGACCAATGAATATGTATT
CTTTGTTGAGAGAAAAAGATCGACTAGGCTCTCCGCGCTACCGACGAGC
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protein sequence of EsuBft104_7a-0001

>EsuBft104_7 ID=EsuBft104_7|Name=EsuBft104_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=98bp
MTRVLDLEADHSETNLGNEALDRVRNLRSAPTTAGAVSGGADVASAQAVV
VALKAYAESLEIHLEREERVLVARWLNLSAEMYAKYRTYLVGKYRLVY
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mRNA from alignment at Scaffold_255:512939..517034-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft104_7a-0001 ID=EsuBft104_7a-0001|Name=EsuBft104_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4096bp|location=Sequence derived from alignment at Scaffold_255:512939..517034- (Ectocarpus subulatus male Bft15b)
GACCTAGAGGGGCAGATTAGGTACGACGAAGGAGCCACCGAGGGCCATAT
GCTGGAGGTCTTCAGACGCCGTTCGTGATGGGATTGTTTTTGTTGTTGTT
CCTGCTGCTGCTGTCGTTCTTGTCGTCATCGTCGTCTTGACACTATCGAA
CCCGCTCCGAACTCTGTTCTGTACTTGTACTTTTCTGTTCTCTTCATCCC
CACCGGTCCAAGTGACGCCATTACAATTACCACGAAAAGAGCACGTAGTG
CCAAACATCAAGAGAAAACAGTACCGGCCTTGGAGGGAAGTATGACAAGG
GTCTTGTGAAAGGTGTCCCACACGTCCGAATGGCAGAGTTCCGGGTGTGC
TGTGGGCGTCTACGATTTTTGTTCAGTGAGACACGAAAAATGCCCTCAAC
AATCGCAATGTACATGAATCAAACCTTCACAATTGTTGGCGGAAGTTGTC
CTTCTCGTCGATATTCGCAATCTGTTTTTATTTTTTTGTCTCCAACCTAT
CTATTCTCGGAGTGTGTCAGTCTACACCTGCACTGTGCACAAGGGATCCG
GTCCTCTTTGCGCGCAGTCCCCACAGGAGTTGCTCTCTGCGACCAGAAAA
CCATACACGACCAACAAGTGGCGGTACCGATGACACTCGCACGGTGCCCT
CGGACCCCACGCCACCGTTATCTTCTCTGTCTCTGTCTCTGTCTCCGTCT
CTCTCCATCTCTCTCCATCTGTGTCAGACAGACATCTGTGTGTCTGTCTG
TCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTC
TGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCCTCCCCCTCCTTCTCTTCTACGCCCTTTTTTCGATGTCCTTTG
GTCTTTGACCTTGACTTCCATTGTGAGCCCCTTCCCCGGAACATTCTCCA
AACACAAACCGAAAGCACCCAACACCCTCATCCCTAACCCCTCGCCTCGC
GAAAATATATACCGATGGCCTTTTCCGGAACATCTTGCCGTTAGGGACCT
ACTGTTATAGCCAACCACCTCCGACAAGCAGCTCGGAAACGACGCGCTCG
ACCTACATTACCCAACTCGCCTCGCATTTTTTGTCCCCAATTTTTTCTTT
TTTCTCGCCCACCATTCGTCCTGGCAGGGACCTACAAGCCGACCATTCAG
ACACGCAGCTCGGAAAAACGACGCACTCGCCCTGACCCCCGCCTTGCCTC
GCGACCTTTCCCCCCCCCAAACTTTCTTTTTCTCGCCCATCTTTTTTGGC
AGGGACCTAGAAGCCGACCATTCCGAAACGAACCTCGGAAACGAGGCCCT
CGACCGCGTCAGGAACCTTCGGTCGGCCCCCACAACGGCCGGAGCGGTTA
GCGGCGGCGCTGATGTCGCCTCCGCCCAGGCCGTGGTGGTCGCCCTCAAG
GCGTACGCCGAGAGCCTGGAGATCCACCTGGAGAGGGAGGAGAGGGTTCT
GGTCGCCAGGTGGCTCAATCTCAGCGCCGAAATGTACGCCAAGTACCGTA
CGTACCTGGTGGGAAAGTACCGCCTTGTGTACTAAAGGCGCGTGCGTGTG
TGTGTGACTCGGATTTTTTGTGTGTAAATTTGGAGAGCGAGGTTCATTCT
AGTGCGTCGTCGGGGGGTGACTCATTGCCGTGCATGCCGGAGGGCGTTAG
GCCGTTGGCCTCTCACAGAGCCGGGGCGGAAGACGCCGAGTTTTTCCCGC
CAGACAAGGCTAGCGAATTCATCACGTGCGAAGCGCCGGGAGGTATTCGG
CGAGTCGCATGGAGGGTGCGCTGCATCCTGCTAAGGGTGTTCGGCATCTT
GTGCCTTCTTCCTTGCATACGGGTGACAGCTGCGTATGACTTCATTTATT
TTCTGATGCTTTCACTTCCACCGAAAGGCTTACGCACTGAGTAGTTGCTT
CGAGGGAAGGGCAGGGGGGAGCGATTGACAGCGCGGTGGCAATGAGGCTT
TCACGACGCGCGTCTGATGGTCGGCGTGCGGTGCGGCCGTTGTCCTTTTA
TACATTCCTTGGAATGTTTTGGTCAGGCTCCAACGTTTTTTTCTGTTTCT
GTGTAGGACACATCGTGGGAAGGGTTGTGTCTGACCGACCTACCTTGAGC
GATGATGTTCCACATAGCGCTTCCGTGTTCGTTTTTTTTCTGCGTTGGAC
ACCGGTTGGGGATGGGACTTACCTGCCCGCACGAGCTTGAGCTTCGCGGT
TGACTATATAGCGCAGCATGTGTGCGTCGTCAACGTGGTCCGCAAGGTAA
TCGGGGGAAAAGACGTTGGCTTTAAAGTGGTTATCTTCTAGTTGCCATCA
CGCCGGGCACAGGCCTGTAGTCAAGCATCGAACGCAAGACAGCGGTAGGT
ACCACATGTTGCTACGCACGCTGTTCTGGGTTATGAGTTGTGGGTTGTGA
CGCATGTTGCTTCGTCATTTCCCACGACCAGCTGTATGTTAGGCTACCTT
GCCGTTCGTGTATGAAGGGGTGGGTGGCGGTGTTTGGTGAATCCTGCGAG
AAGGAAGTTTGGAGATGGAGAGAGATACATACCGAGATGCGGGCCGGCAT
GTTGCTCTATCGCTGGCGCTCGAGGCAAGAAGTATCGAGATGTGAGTTCA
GTTATGGGAATCGTTATTGTGCTTTCGAAAAACGCAACACACATGCGCCT
CTAGCCACGAACATAGCGTCTGGGAAACGTTTTTGCCCTTGTGCGTTCGT
ACGGGACTGTCAGCCAACGGTCATTCTAGGCGTGGCCCGTCAAGGTTCGA
CTTCATACTACGTAGCTTGTTTTCCGGTCGGCGGTGGGTTGCCGGTTATC
CACTACATATGAAGGAAGTAGTAGAGTTGGAATTGACCCATTTTGTGAGC
TTTGATGACATGACCAGCTGAGAGCCAATGGGTTGAATTCCTGTTGCTGT
CGTCATGTTATATTTTCTCAGCGCTCTCGAATGCACCAGCCTTTCGTGTC
GCTACAATACAGGCCACAAAGGGAGGAGAGAGGTCTTGAGAAATAAGCCC
AAGTCTACCTCAACACACATGCTTCTAACCGAGGCTGCCAATCAACGGCG
GCGATACGTAGACTCATTGTGGCGTCGGAACTCCTCATACATTGTGTCCC
CCGGTAGTCCGCTCGGCTCGCTACGACGACGAGAGTTTGCAGTTTTCATC
CGTGGCGGTCGACCACAGAGGGGACCGTGCTGTGAACGGGTGTACCCGGA
CCACGCAATAACGTCCATACGTGACGTGGATTAGGTTTCGCATACCGCCT
TGTGTGAGCACGGTTCAGCACGCATTGTGGGCTACCTTTGCGGAAGACAC
CGTAGTGACTGCGCCGAATGTTACATGGTTGGTTCGCTGGAGGCTCAGAC
TAAGTGTATTGAGGCAATCGTTGGCAATGTTCGCTGAAAGACCGTGATGG
CCCTTTGGTTGCGGCGAGAAGGCTATCTCTGTCTATGTTGCTTCGGTGTC
TTGATTTCGTTGACCGCGAAATAGAGGTTGACCAATGAATATGTATTCTT
TGTTGAGAGAAAAAGATCGACTAGGCTCTCCGCGCTACCGACGAGC
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Coding sequence (CDS) from alignment at Scaffold_255:512939..517034-

>EsuBft104_7a-0001 ID=EsuBft104_7a-0001|Name=EsuBft104_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=297bp|location=Sequence derived from alignment at Scaffold_255:512939..517034- (Ectocarpus subulatus male Bft15b)
ATGACAAGGGTCTTGGACCTAGAAGCCGACCATTCCGAAACGAACCTCGG
AAACGAGGCCCTCGACCGCGTCAGGAACCTTCGGTCGGCCCCCACAACGG
CCGGAGCGGTTAGCGGCGGCGCTGATGTCGCCTCCGCCCAGGCCGTGGTG
GTCGCCCTCAAGGCGTACGCCGAGAGCCTGGAGATCCACCTGGAGAGGGA
GGAGAGGGTTCTGGTCGCCAGGTGGCTCAATCTCAGCGCCGAAATGTACG
CCAAGTACCGTACGTACCTGGTGGGAAAGTACCGCCTTGTGTACTAA
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