|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 2880.D7FH68 |
ProteomeId | EsuBft104_5 |
Protein domains | CYTOPLASMIC_DOMAIN |
Protein domains | NON_CYTOPLASMIC_DOMAIN |
Protein domains | PTHR22950 |
Protein domains | TMhelix |
Protein domains | TRANSMEMBRANE |
Protein domains | IPR013057 |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 3 |
Max annot lvl | 2759|Eukaryota |
Length | 327 |
Hectar predicted targeting category | signal peptide |
Evalue | 6.81e-43 |
EggNOG OGs | COG0814@1|root,KOG1305@2759|Eukaryota |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
KEGG ko | ko:K14992 |
KEGG TC | 2.A.18.6.8 |
KEGG Pathway | ko04727,map04727 |
Description | amino acid transmembrane transporter activity |
COG category | E |
BRITE | ko00000,ko00001,ko02000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft104_5a-0001 ID=EsuBft104_5a-0001|Name=EsuBft104_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3277bp|location=Sequence derived from alignment at Scaffold_255:530429..536141- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ACCGTCGCCATCATGGGGTTCTCGCTCTTTTGTGCGCTGTCGGTGCCAGG CGTAGGCGTCGTCTGGAGCATTTGCGGATCATCGGTGGGGTTCATGATCT GCTACCTCCTGCCGGGGGTGTTCTACCTCAAGATCAGGTGGCACAAGCAG TTCAACAAGCGCAAGGCTGGGGCATTGGTAGTGGTAGTGTTGAGCTCCGC GGCCATCGTGATCTGCACCAGGCACGCCGTGCTGCAGGCCATGCAGTGAC AAGAGGAAGCACGACGGAGCGAACGCCTATTTTCTTGAAGAGTTGCTGAG GGTGGAATTTGGTCGTGGCGTTGTTTGACGGAGACAGGTCCGGTCAGAAG AGGACACGACCGCATACTTTTTTTCTGTTTGTTCCAGGCGCGGAGTTTAT AGCCGTGTCGGTTTTTGATGGAGACAAGTGGGGTTAGAAAAGGACACGAC GGCAACGGTCGTTCCTTTTTTGTTTTTTTTGAGATGCGGAGTTTGATGAT GCTGTTGTTGGACCCGAGACATCGACTATTCGGTCAGAGAAGATAACGCG ACCGCTGCGGATGTTTCTTTTTTTGTTTGTTGCAAACGCGGAGTTCAGTA GTGTCGTTGTTTGACGGAGACAGGTTCGGTCAGAAGAGAACACGATGGCA ACGGTTTCTCATTTTTTTTTTTTTTAAATGCGGAGTTTGATCATGTCGTT TTTTACCCGAGACAGGCTCGGTCAGAGGAGAACAGGACTGCTGTGGATGT TGCACTCTTTTTGCTTGTTGCAGACGCGAAGTTAGTGGTGTCGTTGTTTG ACGGAGGCAGGTTCGGTCAGAAGAGGACACAACGGCGACGGGTATTTCCT TGCGTTGTTTTGTGAGATGCGGATGTTGGTGGTGTTTGACGGAGACAGAT GCAGTCACTGTCAGTGTAAAGCGAACGAACGACCGACGGAAATAATTCTT CTTGGTCTGTTGGAGGCTTTGAAGTCATTGATGCCGTTGAGAAGAGGACA TGGCTGCGACGGTTTTATGTCTTTTTTTTTGTTTTGGAGATGCGGACATG AGTGGTGCCGTTATCCGACGGAGACATGTGGAGTGAGGCGAGGACACGAC AGGAACTGATATGTTTTTTGTTTTTTGCAGACGCAAACTTCATTTGTGCC TTTGTTTGACGGAAAAAGGCCTGGTTCAGACGGAGTAAAATAGTGAGAAA TGTTATGTTGTGATGGTGCACACGGTTCTATGTGTTGTTGCAGGGAACGG CCTGCGACACAGCGTTGGCGAAACAGAGGGTAAATGCACGGGCTAGTTGT TCAGCAACGTGCTGCAACGTGGTTTAGATGGACACCTAGTTTTCCTTTGT ACCGCCTCCCTCCGCCTGCGATTTGGATGGTTGGAATTCATGCGTGTTGG CATCCTCGACGTCACCGATATGTAGTGGTAGATTTTCCATTGTACCTTTC TGAAATAGTCAACGTACGAATGCGTTGTTAGATATATCACGGAAGGCATC GGATCATGGAGCACACGTCGGACACCACCATAGGTAGGGGAAGTACCGGT AGCGAGCAGGTGAATTTCCCGTAATCGTGCCCAAGGCTGGATTATTAGCC GCCCCATGTCGCTGTCGGTAGAGATTCACTTAGCTCGTGTCTGTTGTTGC TCCCGACATGTCAGGATGGTGGTCCTCCCCTCCACGTTGCCTCAACGTAG TCACGCTCTCTCATTTCCCAACGGCGTTTTCATGTGGCCGTCTGAGAGTG GTCTCTCTGTGAACCTGCGGTCAAGGGACAGCAGTTTGCAACCGTGCATG ATCCCCAAAAGATCGAATGTCTCTGTCGGGGCTTGTTGTCTGGTTTTTAC GGATGGTGAGTTGTTTTCGAGTTGGCGATGATCAGTGTTTAAGGTTTTGA GGCTGAAGACGTTCCTCGGTGTGAGCAGTGCCTCTTGTCTCGGCGATTTC ATGAAAGGGAGGACGAGTTTTTTTCCCGGAAGGGGTGCAGGACTCGGCCC CTCCCGCCTGGCATGTACCGCAGAATGACGGATGTTACTCTATGTTTGAT GACGAGAAACCTATTCGTCGTTACAGGTGTCTGGGGGCATAATACAGAGA GCAATAGTTTTTTGTAGTCGGCGTTTTTGGAGGGGGGTAGTATCCGATAA AGGCTTGCGACATTCCTTGGCCATGCGCAACAGCTTACCGCCTTCGGAAA GTGTGAACGTTTGCGTTGGAGGGAGCGGAGAACGTAATACATCATGTTTT TTCATGATTTTTCTTCATAATATCCATCTCAATCCATATGGTTATGGTCG AGGATATGTATTTTCGATTTTTAGTGAATTCACATCGTCAGTGGCGAACC TCCAATGAATTCATAGCATTTGTGGCGAACCACTCGTGTTTCTACGATCC ATTGAGCAGCATTCAGTGACATGTCTGACGCGGGTAACAGGCCCCACAAA GAAATGCGTGAGGGCTTCGAGACTAAGGCGGCCTATATATATGAGACGAA CGTTGGTTGCTGCTGTCAGCTACGCTTGGCCGACGACTTGGCCAATCGGT AATTGATTGTGCTGTTGTGCATGGAGATCAAGTGGGTCAAGCCTTCAACA CGGAAGATCACGTTGGCTGCTGCTGGCGGGAATGCTTGGCCGAAGACCTG ACCGATCAGAGGTCGAATTTGCTTGTTCTGCCTGGTATTAGGAGCAAACA CACGTCCCGACCCAATGTATCGGCGCGCGGAAAGAACTACAAGCACAGGT GCACCATCCTATTCGCCGACCAAGATCAACGCCTTGAAATTGTGCCCCCG AATGCTCTCCACAAATTAGTGCCTTTCGTACCGAGAGTGCAGATGTAAAC GCCAGGTGATCAGTCCGTGTCCAGCAAGCAAGCGGGTTCACTCATTGCGG ATCTTCGTCCAAAGACCCAATCCAGGATGTACAGCAGTGCCCAGACACAC CGCGTCCGCTCCACGAAGAACCCGGCGCTGCGCTGATTCAGTGGCTCACA ACCAAAAATTACAATCGGGGTTCGAATCCCTCGTGGACCACTTGTGACGC CTTCTTTCCGAAAAAGTCTGGGATACGCCTGAGAGACGGTATACAAGTCG TTCAAGTGAAGACACATATTCCCGCCTGTAAGTCGATGAACCGCATGGGG GAGCGCTGATTACAGGGATTACAACGCTGGGGTTTACCGAGGTCCAACAG CTATAACAGGCTGAAGGACCCCGGTTGTACTATTGTTATGATGTACAGCA TATCCACTATGCTACAAGTCAGCCGCT back to topprotein sequence of EsuBft104_5a-0001 >EsuBft104_5 ID=EsuBft104_5|Name=EsuBft104_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=78bp
MGFSLFCALSVPGVGVVWSICGSSVGFMICYLLPGVFYLKIRWHKQFNKR KAGALVVVVLSSAAIVICTRHAVLQAMQ back to topmRNA from alignment at Scaffold_255:530429..536141- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft104_5a-0001 ID=EsuBft104_5a-0001|Name=EsuBft104_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5713bp|location=Sequence derived from alignment at Scaffold_255:530429..536141- (Ectocarpus subulatus male Bft15b) ACCGTCGCCATCATGGGGTTCTCGCTCTTTTGTGCGCTGTCGGTGCCAGG
CGTAGGCGTCGTCTGGAGCATTTGCGGATCATCGGTAAGAACAATTGTCC
ATTTTCGGTTGGTGGATACAGAACGCGCCACCGCTGAAGAGGTTGGCAGC
TCAGAAGTTTATCCTACGAAAAATCCAAGTTAAAAAAAGGTGGCGTGTGC
GTCGTCGGAGCATTTTGCGCATCGTCAGTACGAACATCTTTCTTTTTTGA
TGTCGGTGCATGTAAGTTTTCGTCAATTGATGCTTGCTGCCTCATTTAGA
CGATTCTACTTGCATGTGGCGGGTCTCTCATTGGATGCCTGCTGCCTCAT
TCGGTCGATTTCACATGCATGTGCTACGATACATTGGCATGCGATCACCT
AGGAGCTTAGCAGCCTAAAAAGAATCCATACTGTTAAGAAGTTGGCCATA
CATTTGCCGGAGAAATCCAAATTCTAAGAAGTTGGCCACACATTTGCCGA
ACAAGTAAGGGGTCGGCCATCTATTTGCCGAGGGCTGTGGTGATCGCCTG
AATCCTGGGGATGGTCGGCCGCGTCGATTGCTCGAGGTATCATCCGTCGT
TACGGTGTTGGTCCGTTCCGATACGCCGCGGTCCCGAATAGCGCAGTTCC
CGATACACCGCAGTATTCGTATTTTTATTTCCTTGGCCCAACCTAGCCAG
ACTAATACAACCAGGGACGTTCCCCCAGTAGCGCGGGCCTCGATATAACG
CGTCTGTCACTGCACCGTCATGTATATTGGGACCACTACTGTATGCTATA
TTTTTCGAATTGGATAGCTTGCTTGCTCCTTAGTTTGGGTGCGGGAAATG
GACTCTTGGAGGTTGAAAACATGTTTGGGTTTTTTGCTTGTTTCAAACCA
CTGGCTGCGGTGTAGTGTAGCCCTGGTTGAAGCCTTTCCTGCTCGACAAC
GCAGGCGCGTCACTGCGTTTGTTTTTCCTGTGTTGATTGAGTACAGAGAG
AGTAGCACCAGTTGCGACGTAGATTTGAGCACACATCTCAATGTCGCCAC
GCCGAGTCTCGCTCAAGGATGACTATTTAGCGCGCGAGACGGGAACTTCG
CGACCTTGTTGGTGCTGTTTTTTCCCATGACTACGTTACGAGGGATGAAA
GCGACAGGCTCTTCCTCGCCCTGCTGATCTGGACGGGGGTCTACTCTCCT
TGGCTAGTATGGTCGATTGATGGATCATTCTTGTGGTGGTTGTTTGACTC
GTTTTCGGCTATGAACCAGCCGTTGAACAAAAGGGGAACAAAAGGGACCG
GAACAGCAAGCGTGTGTGGGTCACTTGTCCTTCCTGTTCTTGATGTTGCC
TGTTGTTGACGTTTACTGTTCTTTGTCCTTGATATTGTTCTGTTCATGTT
CTTCCTCTCCTTGTCCTTGTTCTTGTTCTTGACGGTGTTCTGGTCTTCTT
CGTCTTCTTCTCTTCTGCTTGCCGGTGATGGTTCTTCCTTAGGTGGGGTT
CATGATCTGCTACCTCCTGCCGGGGGTGTTCTACCTCAAGATCAGGTGGC
ACAAGCAGTTCAACAAGCGCAAGGTCAGTCAGTCCGCGGCGTGTCACTGC
ACAGATACATACGCCTTTCGTCCTTACACGTCCACCCCGCCTGTCTCTCT
TGAACCCAGGTGCCCCCCACCCCCCCCACCCCATCCACGCCCGGTTATGC
CCGGCCCCTGGCCGACCTTTTTTTTTTTTTTATGCCCTTGCTTTGGACTC
TACAGTGGGGATCCCTGTGTAGTGGTGCCAATGCCCGGTATAGTGCAGGT
GGTTCGGCGGGCACACACTGACTTTTCATGTCATTCTCAAAACTTCGAGT
TGTGCCGGTCCGGGTACAGTCCCGGGGAAAATTCTGGGCACATGCCGGCA
CTAGGCAGGGACCCAGGTAAATGTATGTGTGTAATGTGTTGTGTCTGCAT
CCATCGGGCTGACTCACTGACCCGTGAAGCCGTTTCAATCTTGTGGAAAT
AATTCACGGAAATGTCTCCGAAATTGCCATGTCATCTTGAGGGCACACTC
CGGTGTAGTGTGTCCTTGTGAATAGCTTGCCGGGACTGGTTCTAAGGGTC
ATGCCTGTCTCTTTTGTCGCTAGCATCAAGCCTCGCTAGCCGGCTGGATA
GTGAAAAGCTTCCAAATGCCGTGACCTGTGCGTGTTGGCTTGCTCGACAT
TGCACTTGGCGAGACGTCCACAAGGTGTACCGCCGTTTTCCTACTTTGCG
AGCGACTCTCTCCCATCCTCGACTTCTCTCGAACCCTCACGTGCTGTGTA
CTACCGAATACTGGTACGAAACAAAAGAACGCAGCCCTTTTGGCCGATTT
TGAAACTCGATTTATCAACAGCAGAAACAGGTCAGGGCCGAAAAAAAGGC
GGCGCTGAACCCGTCTCGTCGAGAGCTCTCCGAAACAGTTTCGTTTCGTT
TGTGCATCCTCTTCGTCGTGGAATGATCGAGCTTTGAAAATCGGTCCAGG
GGGTGTGTTATCTTGTGTCATATACGGTAGTCGTGGACTATGCGACAAAC
TACGTAGTACGAACGNCCGGTTGCGCTGCCTTACTGATGCGACACGACCA
GGCTGGGGCATTGGTAGTGGTAGTGTTGAGCTCCGCGGCCATCGTGATCT
GCACCAGGCACGCCGTGCTGCAGGCCATGCAGTGACAAGAGGAAGCACGA
CGGAGCGAACGCCTATTTTCTTGAAGAGTTGCTGAGGGTGGAATTTGGTC
GTGGCGTTGTTTGACGGAGACAGGTCCGGTCAGAAGAGGACACGACCGCA
TACTTTTTTTCTGTTTGTTCCAGGCGCGGAGTTTATAGCCGTGTCGGTTT
TTGATGGAGACAAGTGGGGTTAGAAAAGGACACGACGGCAACGGTCGTTC
CTTTTTTGTTTTTTTTGAGATGCGGAGTTTGATGATGCTGTTGTTGGACC
CGAGACATCGACTATTCGGTCAGAGAAGATAACGCGACCGCTGCGGATGT
TTCTTTTTTTGTTTGTTGCAAACGCGGAGTTCAGTAGTGTCGTTGTTTGA
CGGAGACAGGTTCGGTCAGAAGAGAACACGATGGCAACGGTTTCTCATTT
TTTTTTTTTTTAAATGCGGAGTTTGATCATGTCGTTTTTTACCCGAGACA
GGCTCGGTCAGAGGAGAACAGGACTGCTGTGGATGTTGCACTCTTTTTGC
TTGTTGCAGACGCGAAGTTAGTGGTGTCGTTGTTTGACGGAGGCAGGTTC
GGTCAGAAGAGGACACAACGGCGACGGGTATTTCCTTGCGTTGTTTTGTG
AGATGCGGATGTTGGTGGTGTTTGACGGAGACAGATGCAGTCACTGTCAG
TGTAAAGCGAACGAACGACCGACGGAAATAATTCTTCTTGGTCTGTTGGA
GGCTTTGAAGTCATTGATGCCGTTGAGAAGAGGACATGGCTGCGACGGTT
TTATGTCTTTTTTTTTGTTTTGGAGATGCGGACATGAGTGGTGCCGTTAT
CCGACGGAGACATGTGGAGTGAGGCGAGGACACGACAGGAACTGATATGT
TTTTTGTTTTTTGCAGACGCAAACTTCATTTGTGCCTTTGTTTGACGGAA
AAAGGCCTGGTTCAGACGGAGTAAAATAGTGAGAAATGTTATGTTGTGAT
GGTGCACACGGTTCTATGTGTTGTTGCAGGGAACGGCCTGCGACACAGCG
TTGGCGAAACAGAGGGTAAATGCACGGGCTAGTTGTTCAGCAACGTGCTG
CAACGTGGTTTAGATGGACACCTAGTTTTCCTTTGTACCGCCTCCCTCCG
CCTGCGATTTGGATGGTTGGAATTCATGCGTGTTGGCATCCTCGACGTCA
CCGATATGTAGTGGTAGATTTTCCATTGTACCTTTCTGAAATAGTCAACG
TACGAATGCGTTGTTAGATATATCACGGAAGGCATCGGATCATGGAGCAC
ACGTCGGACACCACCATAGGTAGGGGAAGTACCGGTAGCGAGCAGGTGAA
TTTCCCGTAATCGTGCCCAAGGCTGGATTATTAGCCGCCCCATGTCGCTG
TCGGTAGAGATTCACTTAGCTCGTGTCTGTTGTTGCTCCCGACATGTCAG
GATGGTGGTCCTCCCCTCCACGTTGCCTCAACGTAGTCACGCTCTCTCAT
TTCCCAACGGCGTTTTCATGTGGCCGTCTGAGAGTGGTCTCTCTGTGAAC
CTGCGGTCAAGGGACAGCAGTTTGCAACCGTGCATGATCCCCAAAAGATC
GAATGTCTCTGTCGGGGCTTGTTGTCTGGTTTTTACGGATGGTGAGTTGT
TTTCGAGTTGGCGATGATCAGTGTTTAAGGTTTTGAGGCTGAAGACGTTC
CTCGGTGTGAGCAGTGCCTCTTGTCTCGGCGATTTCATGAAAGGGAGGAC
GAGTTTTTTTCCCGGAAGGGGTGCAGGACTCGGCCCCTCCCGCCTGGCAT
GTACCGCAGAATGACGGATGTTACTCTATGTTTGATGACGAGAAACCTAT
TCGTCGTTACAGGTGTCTGGGGGCATAATACAGAGAGCAATAGTTTTTTG
TAGTCGGCGTTTTTGGAGGGGGGTAGTATCCGATAAAGGCTTGCGACATT
CCTTGGCCATGCGCAACAGCTTACCGCCTTCGGAAAGTGTGAACGTTTGC
GTTGGAGGGAGCGGAGAACGTAATACATCATGTTTTTTCATGATTTTTCT
TCATAATATCCATCTCAATCCATATGGTTATGGTCGAGGATATGTATTTT
CGATTTTTAGTGAATTCACATCGTCAGTGGCGAACCTCCAATGAATTCAT
AGCATTTGTGGCGAACCACTCGTGTTTCTACGATCCATTGAGCAGCATTC
AGTGACATGTCTGACGCGGGTAACAGGCCCCACAAAGAAATGCGTGAGGG
CTTCGAGACTAAGGCGGCCTATATATATGAGACGAACGTTGGTTGCTGCT
GTCAGCTACGCTTGGCCGACGACTTGGCCAATCGGTAATTGATTGTGCTG
TTGTGCATGGAGATCAAGTGGGTCAAGCCTTCAACACGGAAGATCACGTT
GGCTGCTGCTGGCGGGAATGCTTGGCCGAAGACCTGACCGATCAGAGGTC
GAATTTGCTTGTTCTGCCTGGTATTAGGAGCAAACACACGTCCCGACCCA
ATGTATCGGCGCGCGGAAAGAACTACAAGCACAGGTGCACCATCCTATTC
GCCGACCAAGATCAACGCCTTGAAATTGTGCCCCCGAATGCTCTCCACAA
ATTAGTGCCTTTCGTACCGAGAGTGCAGATGTAAACGCCAGGTGATCAGT
CCGTGTCCAGCAAGCAAGCGGGTTCACTCATTGCGGATCTTCGTCCAAAG
ACCCAATCCAGGATGTACAGCAGTGCCCAGACACACCGCGTCCGCTCCAC
GAAGAACCCGGCGCTGCGCTGATTCAGTGGCTCACAACCAAAAATTACAA
TCGGGGTTCGAATCCCTCGTGGACCACTTGTGACGCCTTCTTTCCGAAAA
AGTCTGGGATACGCCTGAGAGACGGTATACAAGTCGTTCAAGTGAAGACA
CATATTCCCGCCTGTAAGTCGATGAACCGCATGGGGGAGCGCTGATTACA
GGGATTACAACGCTGGGGTTTACCGAGGTCCAACAGCTATAACAGGCTGA
AGGACCCCGGTTGTACTATTGTTATGATGTACAGCATATCCACTATGCTA
CAAGTCAGCCGCT back to topCoding sequence (CDS) from alignment at Scaffold_255:530429..536141- >EsuBft104_5a-0001 ID=EsuBft104_5a-0001|Name=EsuBft104_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=237bp|location=Sequence derived from alignment at Scaffold_255:530429..536141- (Ectocarpus subulatus male Bft15b) ATGGGGTTCTCGCTCTTTTGTGCGCTGTCGGTGCCAGGCGTAGGCGTCGT CTGGAGCATTTGCGGATCATCGGTGGGGTTCATGATCTGCTACCTCCTGC CGGGGGTGTTCTACCTCAAGATCAGGTGGCACAAGCAGTTCAACAAGCGC AAGGCTGGGGCATTGGTAGTGGTAGTGTTGAGCTCCGCGGCCATCGTGAT CTGCACCAGGCACGCCGTGCTGCAGGCCATGCAGTGA back to top
|