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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FH68 |
| ProteomeId | EsuBft104_4 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | PTHR22950 |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | TRANSMEMBRANE |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | IPR013057 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 36 |
| Evalue | 7.73e-38 |
| EggNOG OGs | COG0814@1|root,KOG1305@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K14992 |
| KEGG TC | 2.A.18.6.8 |
| KEGG Pathway | ko04727,map04727 |
| Description | amino acid transmembrane transporter activity |
| COG category | E |
| BRITE | ko00000,ko00001,ko02000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft104_4a-0001 ID=EsuBft104_4a-0001|Name=EsuBft104_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=360bp|location=Sequence derived from alignment at Scaffold_255:540558..543128- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGATGACTATCTTCGTCACGATCGCGTACATGGTCCTCGTCCGGGA
CATTTGGTCGGGCATCGTGGAGTCCGTCATCGGCGAGACCCTGGACTCGG
ACCAGAGCAACTATGTGTTGTTCGTCGCTCTCTTGCTCGTATTCCCCGCC
TGCTTGGCCAAGGACCTCCATGCCCTGAGGCACTTCTGCTACGTCGGCTT
CTTCTCGGCCCTCGTGCTTACCGCGGCGATCGGGTACCGCAGCGTGGAGG
CCAACCAGGAGGACCCCACGGCGAAGCTGGAGCTGAAGCTGAACGCGGAC
TCTTGGGGGGACATAATGGAGGCTTTCCCCATCTTCTGCCTCTCCTTCCA
GTGCCNNNNN back to topprotein sequence of EsuBft104_4a-0001 >EsuBft104_4 ID=EsuBft104_4|Name=EsuBft104_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=120bp
MAMTIFVTIAYMVLVRDIWSGIVESVIGETLDSDQSNYVLFVALLLVFPA
CLAKDLHALRHFCYVGFFSALVLTAAIGYRSVEANQEDPTAKLELKLNAD
SWGDIMEAFPIFCLSFQCXX back to topmRNA from alignment at Scaffold_255:540558..543128- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft104_4a-0001 ID=EsuBft104_4a-0001|Name=EsuBft104_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2571bp|location=Sequence derived from alignment at Scaffold_255:540558..543128- (Ectocarpus subulatus male Bft15b)
ATGGCGATGACTATCTTCGTCACGATCGCGTACATGGTCCTCGTCCGGGA
CATTTGGTCGGGCATCGTGGAGTCCGTCATCGGCGAGACCCTGGACTCGG
ACCAGAGCAACTATGTGAGTGGAACCGCCCATCGCGCGATCAATAAGTGT
GTGAGGAAATAATAAGAACATCTGCTCTACTTGTTGTCTTTTTGCTGTGC
ATATTTTCGTTGCTGTGTAACAGGTACTGAACCTCTTTCTTTGTTGTGTA
CGAGCTGCTTAACCTCTTTCCTTGTTGTTGAAGTGCTGTTGAATCTCTTT
CTTTTTGGTAAAGAAGCTGCTGAACCTTTCTTTTTTCTTGTGTAAAAGCT
GCTGAACCTCTTTCTTTGTTGGCCGGTTGGCTGCGGCGGCAGGTGTTGTT
CGTCGCTCTCTTGCTCGTATTCCCCGCCTGCTTGGCCAAGGACCTCCATG
CCCTGAGGCACTTCTGCTACGTCGGCTTCTTCTCGGCCCTCGTGCTTACC
GCGGCGGTAAGGCTTTCTTCCCTTTCTCGCCTTTTTGCTGCCTTTTGGGT
TTGTTGTGGCGGCAACGCTATCTCGTGCAGGGGGGGGGGGGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGG
GGGGGGGGGGGTACTCATAGGCGTGCATGCCGAAGTCGTTAAACCATTGA
CCTCGCATCACACAAAGCCCGGGACGAAGCACGCACTCCGGGTTCCCACC
GGACCAGGCTCTCACATCACCAAGCGCGACGCGCCGTGATTTATCTAGTG
CAGGAGGCGTTTCTTTGTAGTCCGTGCACCCACCCCCTCTCTATCTCTCG
CTCTCTTTCTTGCACGCTTGTCACCCATCATACGCCGAACCAACACGCCA
ATGCGATTTGTTTTTGCTTCAAGGGGCGAACGACGCTTCTTTTGCTGAAG
AATGGTGCCAACGCTCACCCCTGGAGTGAACAATTTTGAGTTTTTTCTGG
CGGGCCACAGAGCGGCACTGCTGGTAGCAGTGTTCGCCTCGTGTTTTTAA
TTCTGTCCGGCTGCTTCGCCGCCCATGACCGTCGGTGCAGCGGCAAAGCC
CTGGCTATGGTTTGGGTATAGCCTCATGGCCGTGCTGCTGCGTACCCTAC
GGCTAGAAAGCATCTATTCGTGTCTTGTTTGCCCGCTACGAAACTGGCGA
TTTCCTCGGGTCTTCGGTTGAGAGCGGGAGTGGCACACACACACACACAC
ACACACACACACGCCNTTTTTTTTTTTTTTTTTGCTTTTTTTGTTGAGCG
CCTCAGGGCTATTCGTGGAACAGGGTGGAAGAATCCAATGCACGAGGTGG
ACAGCCTCTGCCGTAGACTCTTGGCGTTCTTCCACGAAGACAAGCACTTG
CAAGGGCAGTAGAGATTACTTGGCGGACAGGTAGTGAGACACATTTTCAT
GTTTTGATCCTCAGGGAGTGGAAGCCTTGTGGTGGGTGGCCAGGGATCGT
AGGAAGCGGCACGAGCGCTGCGAGCGCTGATTTGAAGTAAAGACTACAAA
AAAAAAAAAAAGCACTGAGACTGACGTCTTTTCATTGGCCAGCCACGATC
GCGGCTGATACGAACAACGGAGACACGCACGCACGACGCCTCCCAGATGA
TGGTCTTGAGAAATATTTGCTGCTTTTTTGCTGCACTGATACTGACTCTG
CGCTCGATCACCGGTTCAGCGCGGTCGATGCTGAGAATGAGAGTAAATCA
TACACGCCTGTTGTCTTTTTTTGTTGCTACCTTGGCACCACTGGACTGGC
GAATCAGATCTTGTACCGCCTTCAACCACACTTAAAAGACTGACGTTTTT
CCATTGGTCAGTCAGCCGGTTAACGCGGCCGATGCTAAGAACTATTTTTG
ACACACGCATCCGTGGTCATTGTTTTTCGTCGTGTTTCGTGCTTTGATTG
GCCGATCAAATGGGGTTTCGCAGCGTGCCGACCGGCGAGAAAGGTCGTTT
TATTGGTGAGATCTTGAGGCGAATGGAAAAGCACACAGCAGTTGACTTAT
TTTTGTTTCGCCGTGTTTGTTTACTTGATTGCCAATCAGATCGGGTACCG
CAGCGTGGAGGCCAACCAGGAGGACCCCACGGCGAAGCTGGAGCTGAAGC
TGAACGCGGACTCTTGGGGGGACATAATGGAGGCTTTCCCCATCTTCTGC
CTCTCCTTCCAGTGCCNNNNN back to topCoding sequence (CDS) from alignment at Scaffold_255:540558..543128- >EsuBft104_4a-0001 ID=EsuBft104_4a-0001|Name=EsuBft104_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=360bp|location=Sequence derived from alignment at Scaffold_255:540558..543128- (Ectocarpus subulatus male Bft15b)
ATGGCGATGACTATCTTCGTCACGATCGCGTACATGGTCCTCGTCCGGGA
CATTTGGTCGGGCATCGTGGAGTCCGTCATCGGCGAGACCCTGGACTCGG
ACCAGAGCAACTATGTGTTGTTCGTCGCTCTCTTGCTCGTATTCCCCGCC
TGCTTGGCCAAGGACCTCCATGCCCTGAGGCACTTCTGCTACGTCGGCTT
CTTCTCGGCCCTCGTGCTTACCGCGGCGATCGGGTACCGCAGCGTGGAGG
CCAACCAGGAGGACCCCACGGCGAAGCTGGAGCTGAAGCTGAACGCGGAC
TCTTGGGGGGACATAATGGAGGCTTTCCCCATCTTCTGCCTCTCCTTCCA
GTGCCNNNNN back to top
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