EsuBft104_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft104_3a-0001
Unique NameEsuBft104_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_255contigScaffold_255:563369..565632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog946362.XP_004988255.1
ProteomeIdEsuBft104_3
Protein domainsPTHR19303
Protein domainsIPR009057
Protein domainsIPR006600
Ownerapollo_admin@sb-roscoff.fr
Notetigger transposable element-derived protein 4 os:mus musculus gn:tigd4 pe:2 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl33154|Opisthokonta
Length1299
Hectar predicted targeting categoryother localisation
Evalue1.38e-23
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,39T7X@33154|Opisthokonta
Date last modified2016-06-14
Date creation2016-06-14
DescriptionDNA binding
COG categoryBD
Cross References
External references for this mRNA
DatabaseAccession
GO0003677
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft104_3aEsuBft104_3aEctocarpus subulatus male Bft15bgeneScaffold_255 563369..565632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_3a-0001EsuBft104_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_255 563369..565608 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_3a-0001-exonEsuBft104_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_255 563369..563512 +
EsuBft104_3a-0001-exonagat-exon-6675Ectocarpus subulatus male Bft15bexonScaffold_255 564047..564506 +
EsuBft104_3a-0001-exonagat-exon-6674Ectocarpus subulatus male Bft15bexonScaffold_255 564610..564821 +
EsuBft104_3a-0001-exonagat-exon-6673Ectocarpus subulatus male Bft15bexonScaffold_255 565150..565632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_3a-0001-cdsEsuBft104_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_255 563369..563512 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_3a-0001-exonagat-three_prime_utr-494Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_255 565609..565632 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft104_3a-0001 ID=EsuBft104_3a-0001|Name=EsuBft104_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1299bp|location=Sequence derived from alignment at Scaffold_255:563369..565632+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCCCGACAACATCGCCAAGCTCAACAAGGCGGTCCAAATGGAGCT
CAACCCGGAGGCCCGCCGCGTCCCGGAACCGGTGGAGGCGGAGTTGGAAC
AGCGTGTTCTCAAGTGGATCAAGATTGCGCGAGAGCGATTCATGACAACA
AACATCGGGCTGAGCGGCACAATGATCCAACATCGGGCCGTGAAGTTCGC
GTCCGAGATGGGCATCAAGTTCGCTGCGAGCAACGGTTGGCTTCACCGCT
TCCTCAAACGCTACCAGTTGAAGCACATCAACCTGCACGGGGAAGCTGGC
GACGTGGACCAGGGGAAGGTGCAGGAGAAGATTGCGCAGATTCGGGAGCA
GCTGAAGGAGTTTGACGTCGAGTTCATCTTCAACATGGACGAGACGGGTC
TTTTCTACCGCTATTTCCCGAGAGGCACGTACGTCACGAGCCAGGAGGAC
GCTGCTGGCGTCAACAAAAAAAACCGAGCGGGGCTCGAAGGCCACGAAGG
CCAAGGACCGGTGCACCGTGGTGGCCTGCTGCAATACAACCGGCTCGCTG
ATGGTGCCGCTGGCCGTCATCGGCACGGCGGCAAATCCGATGGTTTTCCG
CAAGCAAATCCGCGAGGGGAGGTGGCCGTCATCTGGGGCAACTGCCCCGG
CCACAAGTTCATCAACATCCACCCGCAGATCGTCATCACCTTCTTGCCGC
CCCTCGTAACGTCCGTTTTTCAGTCGATGGACATGGGTTCCCTCTTCACC
CTCAAGTGCCGGTACAAGACCGAGGTGGTGGTGAAGCTGTCGGACGTCAT
CGAGGACTGGGACACCGTGCTGGCTCAAGGCCATCATCCTTCCCGAGGAG
CACGAGAACGTCCTCAAGAGGAAGGACACGTCGCTGGAAAGGACAACGGG
AAGGGGGGGGAGGTGGGGGACAAGGGGGGGGACAAGGGGGGGGACACGGG
CGAAAGGGGACTCATCGACGGCATTTGCGACTTGGTCGCGAAGCTGTCGA
TGCCAGACAGCGTCGACGTCACCGACGCCAGAAAAATTCCAGGGGTGTTG
ACGGACAATTTGTTTGTCGAGAAGAACTCGGGCCTCGCTGATGTAGAAGT
GCGAAAGGCAACTAAGACGTGGCTTTCCCTAGAGGATGACCCCAGCGTGT
TGGAAGACGAGGTAGCTCTGGAACCGGGATTGTGGAGCAGAACATGGCAA
ACTTGGAGGTTGATGCCTCTTCTGACGACGAAGATGGCGGGGATAGGCCA
GCCTCGTGTATTACATCTTCGATGACAGAGGCTCAGGTCCGCGCTAGCG
back to top

protein sequence of EsuBft104_3a-0001

>EsuBft104_3 ID=EsuBft104_3|Name=EsuBft104_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=424bp
MMPDNIAKLNKAVQMELNPEARRVPEPVEAELEQRVLKWIKIARERFMTT
NIGLSGTMIQHRAVKFASEMGIKFAASNGWLHRFLKRYQLKHINLHGEAG
DVDQGKVQEKIAQIREQLKEFDVEFIFNMDETGLFYRYFPRGTYVTSQED
AAGVNKKNRAGLEGHEGQGPVHRGGLLQYNRLADGAAGRHRHGGKSDGFP
QANPRGEVAVIWGNCPGHKFINIHPQIVITFLPPLVTSVFQSMDMGSLFT
LKCRYKTEVVVKLSDVIEDWDTVLAQGHHPSRGARERPQEEGHVAGKDNG
KGGEVGDKGGDKGGDTGERGLIDGICDLVAKLSMPDSVDVTDARKIPGVL
TDNLFVEKNSGLADVEVRKATKTWLSLEDDPSVLEDEVALEPGLWSRTWQ
TWRLMPLLTTKMAGIGQPRVLHLR
back to top

mRNA from alignment at Scaffold_255:563369..565632+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft104_3a-0001 ID=EsuBft104_3a-0001|Name=EsuBft104_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2264bp|location=Sequence derived from alignment at Scaffold_255:563369..565632+ (Ectocarpus subulatus male Bft15b)
ATGATGCCCGACAACATCGCCAAGCTCAACAAGGCGGTCCAAATGGAGCT
CAACCCGGAGGCCCGCCGCGTCCCGGAACCGGTGGAGGCGGAGTTGGAAC
AGCGTGTTCTCAAGTGGATCAAGATTGCGCGAGAGCGATTCATGGTGAGG
GCTGACGTTGGACGCCGGGTCGGATAAATTGTGTGTTGATATGGCGGGCA
GCTTATCAGTTGTACGTCCCTCGTTTGAGAATTTCCGTTTGCGTTTTGTT
GGGTATGATTTTCGATCGCGTCAGTCCTTTCATGTCCCCACACATCATGG
GACCGACCTGCCTTCAAAATCCTTTGCACCTACAACTGCAGCCGCTGACG
TCCGATTCTTGCTGCTGTTCCCGTTGCTCTTCCCTCTCTACAATTTTGCA
GACAACAAACATCGGGCTGAGCGGCACAATGATCCAACATCGGGCCGTGA
AGTTCGCGTNTGTTGATATGGCGGGCAGCTTATCAGTTGTACGTCCCTCG
TTTGAGAATTTCCGTTTGCGTTTTGTTGGGTATGATTTTCGATCGCGTCA
GTCCTTTCATGTCCCCACACATCATGGGACCGACCTGCCTTCAAAATCCT
TTGCACCTACAACTGCAGCCGCTGACGTCCGATTCTTGCTGCTGTTGCCG
GTGCTCTTCCCTCTCTACAATTTTGCAGACAACAAACATCGGGCTGAGCG
GCACAATGATCCAACATCGGGCCGTGAAGTTCGCGTCCGAGATGGGCATC
AAGTTCGCTGCGAGCAACGGTTGGCTTCACCGCTTCCTCAAACGCTACCA
GTTGAAGCACATCAACCTGCACGGGGAAGCTGGCGACGTGGACCAGGGGA
AGGTGCAGGAGAAGATTGCGCAGATTCGGGAGCAGCTGAAGGAGTTTGAC
GTCGAGTTCATCTTCAACATGGACGAGACGGGTCTTTTCTACCGCTATTT
CCCGAGAGGCACGTACGTCACGAGCCAGGAGGACGCTGCTGGCGTCAACA
AAAAAAACCGAGCGGGGCTCGAAGGCCACGAAGGCCAAGGACCGGTGCAC
CGTGGTGGCCTGCTGCAATACAACCGGCTCGCTGATGGTGCCGCTGGCCG
TCATCGGCACGGCGGCAAATCCGATGGTTTTCCGCAAGGTTCGCGAGCCA
CCTTGCCCTACTACGCCCAGGCCAGCGCCTGGCTCGATGCATCCCTCTGC
CAGAGGTGGTTCGACGAGGTTTTGGTCCCGTTCGTCAAAAGCAAATCCGC
GAGGGGAGGTGGCCGTCATCTGGGGCAACTGCCCCGGCCACAAGTTCATC
AACATCCACCCGCAGATCGTCATCACCTTCTTGCCGCCCCTCGTAACGTC
CGTTTTTCAGTCGATGGACATGGGTTCCCTCTTCACCCTCAAGTGCCGGT
ACAAGACCGAGGTGGTGGTGAAGCTGTCGGACGTCATCGAGGACTGGGAC
ACCGTTCGTGCGCGCAACATTCCCGAGTAGGAAGATGAGCTAGTCTGACG
TTAGTTTACGCATTGATACTGGTTTTTGTAAGAGAATCGTGGTGGTCGAC
ACGTTGGTCGATGGCTCCCACTCAAATAGAAAAACCTGCCGTTACCGGTC
ATCCATGCATGAAAAAAACAACATGCTCCCTCCTTCCCTCCTTGTACCCC
GGCGACCCTGCGCTCTTCTCCTTTTTCGGGGGATGTCGGGGGCTGAGCGA
TGCAGGCCAGGCGACAATGCTGGACGTCGCTGAGATCCTTACCCCGAAGT
GGTAAAGTTTCTCGGACCAGACTGTTGTCAGGTGCTGGCTCAAGGCCATC
ATCCTTCCCGAGGAGCACGAGAACGTCCTCAAGAGGAAGGACACGTCGCT
GGAAAGGACAACGGGAAGGGGGGGGAGGTGGGGGACAAGGGGGGGGACAA
GGGGGGGGACACGGGCGAAAGGGGACTCATCGACGGCATTTGCGACTTGG
TCGCGAAGCTGTCGATGCCAGACAGCGTCGACGTCACCGACGCCAGAAAA
ATTCCAGGGGTGTTGACGGACAATTTGTTTGTCGAGAAGAACTCGGGCCT
CGCTGATGTAGAAGTGCGAAAGGCAACTAAGACGTGGCTTTCCCTAGAGG
ATGACCCCAGCGTGTTGGAAGACGAGGTAGCTCTGGAACCGGGATTGTGG
AGCAGAACATGGCAAACTTGGAGGTTGATGCCTCTTCTGACGACGAAGAT
GGCGGGGATAGGCCAGCCTCGTGTATTACATCTTCGATGACAGAGGCTCA
GGTCCGCGCTAGCG
back to top

Coding sequence (CDS) from alignment at Scaffold_255:563369..565632+

>EsuBft104_3a-0001 ID=EsuBft104_3a-0001|Name=EsuBft104_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1275bp|location=Sequence derived from alignment at Scaffold_255:563369..565632+ (Ectocarpus subulatus male Bft15b)
ATGATGCCCGACAACATCGCCAAGCTCAACAAGGCGGTCCAAATGGAGCT
CAACCCGGAGGCCCGCCGCGTCCCGGAACCGGTGGAGGCGGAGTTGGAAC
AGCGTGTTCTCAAGTGGATCAAGATTGCGCGAGAGCGATTCATGACAACA
AACATCGGGCTGAGCGGCACAATGATCCAACATCGGGCCGTGAAGTTCGC
GTCCGAGATGGGCATCAAGTTCGCTGCGAGCAACGGTTGGCTTCACCGCT
TCCTCAAACGCTACCAGTTGAAGCACATCAACCTGCACGGGGAAGCTGGC
GACGTGGACCAGGGGAAGGTGCAGGAGAAGATTGCGCAGATTCGGGAGCA
GCTGAAGGAGTTTGACGTCGAGTTCATCTTCAACATGGACGAGACGGGTC
TTTTCTACCGCTATTTCCCGAGAGGCACGTACGTCACGAGCCAGGAGGAC
GCTGCTGGCGTCAACAAAAAAAACCGAGCGGGGCTCGAAGGCCACGAAGG
CCAAGGACCGGTGCACCGTGGTGGCCTGCTGCAATACAACCGGCTCGCTG
ATGGTGCCGCTGGCCGTCATCGGCACGGCGGCAAATCCGATGGTTTTCCG
CAAGCAAATCCGCGAGGGGAGGTGGCCGTCATCTGGGGCAACTGCCCCGG
CCACAAGTTCATCAACATCCACCCGCAGATCGTCATCACCTTCTTGCCGC
CCCTCGTAACGTCCGTTTTTCAGTCGATGGACATGGGTTCCCTCTTCACC
CTCAAGTGCCGGTACAAGACCGAGGTGGTGGTGAAGCTGTCGGACGTCAT
CGAGGACTGGGACACCGTGCTGGCTCAAGGCCATCATCCTTCCCGAGGAG
CACGAGAACGTCCTCAAGAGGAAGGACACGTCGCTGGAAAGGACAACGGG
AAGGGGGGGGAGGTGGGGGACAAGGGGGGGGACAAGGGGGGGGACACGGG
CGAAAGGGGACTCATCGACGGCATTTGCGACTTGGTCGCGAAGCTGTCGA
TGCCAGACAGCGTCGACGTCACCGACGCCAGAAAAATTCCAGGGGTGTTG
ACGGACAATTTGTTTGTCGAGAAGAACTCGGGCCTCGCTGATGTAGAAGT
GCGAAAGGCAACTAAGACGTGGCTTTCCCTAGAGGATGACCCCAGCGTGT
TGGAAGACGAGGTAGCTCTGGAACCGGGATTGTGGAGCAGAACATGGCAA
ACTTGGAGGTTGATGCCTCTTCTGACGACGAAGATGGCGGGGATAGGCCA
GCCTCGTGTATTACATCTTCGATGA
back to top