EsuBft104_26a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft104_26a-0001
Unique NameEsuBft104_26a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_255contigScaffold_255:308304..308964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft104_26
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length60
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft104_26aEsuBft104_26aEctocarpus subulatus male Bft15bgeneScaffold_255 308304..308964 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_26a-0001-exonagat-exon-6736Ectocarpus subulatus male Bft15bexonScaffold_255 308304..308775 -
EsuBft104_26a-0001-exonEsuBft104_26a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_255 308830..308964 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_26a-0001-exonagat-three_prime_utr-492Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_255 308304..308676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_26a-0001-cdsEsuBft104_26a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_255 308677..308775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_26a-0001EsuBft104_26Ectocarpus subulatus male Bft15bpolypeptideScaffold_255 308677..308964 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft104_26a-0001 ID=EsuBft104_26a-0001|Name=EsuBft104_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=607bp|location=Sequence derived from alignment at Scaffold_255:308304..308964- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTTTCGCCTAGACTGCCGACATGAGCCCATTTGGACGCCCTTGTT
GATCCGGCAGACGAGACATCAGACGAACTACATCGACATATCTTTTTCCG
CCCTCAGAAAATTGCCGAAACCGCGTACGTACCAGGAACAAGGGGTGGCA
ATGTCGGGAGTCTGGGGGAACATGGGCTTGAGTGGGGGGTGCCTCAGAAA
GAGCAAGACGGCGGATGTTCCTCTCGTGGTGTGACCGGTGGTAGTATCGA
TCAGCAATGCCGCACAGACTTTTGCGCGCCGAAGTATGCGTGCGACCGCT
TTAATCTAACCACTTCGGCGGAAAGCGGATTTCTGTTCGATAAGGTGTCA
GGGGTACCATGGAAGACGGAGCTGGGTTTTGTTTGATTTCGGGTGGATGA
GGTTGGGGGTTTTGTTCGTTTTTCTCCATCTATCTAAGGTTCGTGCCTAG
AGTTCAGCTGTAGTGTTTCAACCAAAGTTTTGTTGACCTAGAGGCAAACA
TTCCTAACTATTGGGCATCGATTTAATTTAGCTTGGCATGACGGCCTTTA
CGATCGACTTTTTATGTATGTCTGCATTTATCTGCAATTGTCGGAGGGCA
AACAATA
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protein sequence of EsuBft104_26a-0001

>EsuBft104_26 ID=EsuBft104_26|Name=EsuBft104_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=77bp
MLFRLDCRHEPIWTPLLIRQTRHQTNYIDISFSALRKLPKPRTYQEQGVA
MSGVWGNMGLSGGCLRKSKTADVPLVV
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mRNA from alignment at Scaffold_255:308304..308964-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft104_26a-0001 ID=EsuBft104_26a-0001|Name=EsuBft104_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=661bp|location=Sequence derived from alignment at Scaffold_255:308304..308964- (Ectocarpus subulatus male Bft15b)
ATGTTGTTTCGCCTAGACTGCCGACATGAGCCCATTTGGACGCCCTTGTT
GATCCGGCAGACGAGACATCAGACGAACTACATCGACATATCTTTTTCCG
CCCTCAGAAAATTGCCGAAACCGCGTACGTACCAGGTAGACTACTACTAC
TACTGCCGTACAGCAGTTGGTCCTCACATTAGGAAGTAGGAACAAGGGGT
GGCAATGTCGGGAGTCTGGGGGAACATGGGCTTGAGTGGGGGGTGCCTCA
GAAAGAGCAAGACGGCGGATGTTCCTCTCGTGGTGTGACCGGTGGTAGTA
TCGATCAGCAATGCCGCACAGACTTTTGCGCGCCGAAGTATGCGTGCGAC
CGCTTTAATCTAACCACTTCGGCGGAAAGCGGATTTCTGTTCGATAAGGT
GTCAGGGGTACCATGGAAGACGGAGCTGGGTTTTGTTTGATTTCGGGTGG
ATGAGGTTGGGGGTTTTGTTCGTTTTTCTCCATCTATCTAAGGTTCGTGC
CTAGAGTTCAGCTGTAGTGTTTCAACCAAAGTTTTGTTGACCTAGAGGCA
AACATTCCTAACTATTGGGCATCGATTTAATTTAGCTTGGCATGACGGCC
TTTACGATCGACTTTTTATGTATGTCTGCATTTATCTGCAATTGTCGGAG
GGCAAACAATA
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Coding sequence (CDS) from alignment at Scaffold_255:308304..308964-

>EsuBft104_26a-0001 ID=EsuBft104_26a-0001|Name=EsuBft104_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=234bp|location=Sequence derived from alignment at Scaffold_255:308304..308964- (Ectocarpus subulatus male Bft15b)
ATGTTGTTTCGCCTAGACTGCCGACATGAGCCCATTTGGACGCCCTTGTT
GATCCGGCAGACGAGACATCAGACGAACTACATCGACATATCTTTTTCCG
CCCTCAGAAAATTGCCGAAACCGCGTACGTACCAGGAACAAGGGGTGGCA
ATGTCGGGAGTCTGGGGGAACATGGGCTTGAGTGGGGGGTGCCTCAGAAA
GAGCAAGACGGCGGATGTTCCTCTCGTGGTGTGA
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