EsuBft104_24a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft104_24a-0001
Unique NameEsuBft104_24a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_255contigScaffold_255:337380..338081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft104_24
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length70
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft104_24aEsuBft104_24aEctocarpus subulatus male Bft15bgeneScaffold_255 337380..338081 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_24a-0001-exonEsuBft104_24a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_255 337380..338081 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_24a-0001-exonagat-three_prime_utr-490Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_255 337380..337612 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_24a-0001-cdsEsuBft104_24a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_255 337613..337969 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_24a-0001-exonagat-five_prime_utr-299Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_255 337970..338081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_24a-0001EsuBft104_24Ectocarpus subulatus male Bft15bpolypeptideScaffold_255 337613..337969 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft104_24a-0001 ID=EsuBft104_24a-0001|Name=EsuBft104_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=702bp|location=Sequence derived from alignment at Scaffold_255:337380..338081- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTTCTGGTTGGCCTGTACTTCCCGAGATACTCCCGACGTTGTCCGGACA
CATGCCGCACCAGCCCGTGAGGCTAGCTATGCACCCACACCTCGGCCGTG
ATACACACTACCATGGCGAGCCAGCTACAGTACCGCAAGACAGTTAGACA
GTCGTCACTGCACGCCAGACCCGGTGCAATGCATGCTGCCGATATGGTGC
ATTTGCGCCCTTTGAACCGCAGCATACCGTTCTACATGCTCCTCTTGAGT
GACACACCAAGTCGGCGTGACGAGGATGACGGCTATGCTGCGAGCGACAT
AGATCTTAGGAGTGCTGCACAGGTGGAGGCGGAGGTGACGGGGTTAGGGA
TGCTTCAAGCGGCGTGGGAGCGTGAGGAGCTGCTGTGCGTGCGTCCTGTG
GACCGTGCTCCGGTGATACGTCTGTCGCGGACGATCGACTCCGTTGATGA
CTGCGACGCGTATCACTAAACCGCGGGGCAGCGGTAGTAGTAGGAGGAGG
TCCTTGGCCTTCGTGCTGTGTGTTCACCGAAACTCTGGCGAGGGGAGCGG
CCCTCGCCGGAGGACTCGTGTTGCCATGAACACCCGGCAACTGAACCGGG
CCAGCCTTCTCATGAGTACGTTGACCTCCATCGTTCTCCATGATTGTTTA
ACAGCGGTTGTGAGTGTAATGTGGTGGTAGCCTTGCGGTGGGGGTGGAGG
CG
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protein sequence of EsuBft104_24a-0001

>EsuBft104_24 ID=EsuBft104_24|Name=EsuBft104_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=118bp
MASQLQYRKTVRQSSLHARPGAMHAADMVHLRPLNRSIPFYMLLLSDTPS
RRDEDDGYAASDIDLRSAAQVEAEVTGLGMLQAAWEREELLCVRPVDRAP
VIRLSRTIDSVDDCDAYH
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mRNA from alignment at Scaffold_255:337380..338081-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft104_24a-0001 ID=EsuBft104_24a-0001|Name=EsuBft104_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=702bp|location=Sequence derived from alignment at Scaffold_255:337380..338081- (Ectocarpus subulatus male Bft15b)
GTTTCTGGTTGGCCTGTACTTCCCGAGATACTCCCGACGTTGTCCGGACA
CATGCCGCACCAGCCCGTGAGGCTAGCTATGCACCCACACCTCGGCCGTG
ATACACACTACCATGGCGAGCCAGCTACAGTACCGCAAGACAGTTAGACA
GTCGTCACTGCACGCCAGACCCGGTGCAATGCATGCTGCCGATATGGTGC
ATTTGCGCCCTTTGAACCGCAGCATACCGTTCTACATGCTCCTCTTGAGT
GACACACCAAGTCGGCGTGACGAGGATGACGGCTATGCTGCGAGCGACAT
AGATCTTAGGAGTGCTGCACAGGTGGAGGCGGAGGTGACGGGGTTAGGGA
TGCTTCAAGCGGCGTGGGAGCGTGAGGAGCTGCTGTGCGTGCGTCCTGTG
GACCGTGCTCCGGTGATACGTCTGTCGCGGACGATCGACTCCGTTGATGA
CTGCGACGCGTATCACTAAACCGCGGGGCAGCGGTAGTAGTAGGAGGAGG
TCCTTGGCCTTCGTGCTGTGTGTTCACCGAAACTCTGGCGAGGGGAGCGG
CCCTCGCCGGAGGACTCGTGTTGCCATGAACACCCGGCAACTGAACCGGG
CCAGCCTTCTCATGAGTACGTTGACCTCCATCGTTCTCCATGATTGTTTA
ACAGCGGTTGTGAGTGTAATGTGGTGGTAGCCTTGCGGTGGGGGTGGAGG
CG
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Coding sequence (CDS) from alignment at Scaffold_255:337380..338081-

>EsuBft104_24a-0001 ID=EsuBft104_24a-0001|Name=EsuBft104_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=357bp|location=Sequence derived from alignment at Scaffold_255:337380..338081- (Ectocarpus subulatus male Bft15b)
ATGGCGAGCCAGCTACAGTACCGCAAGACAGTTAGACAGTCGTCACTGCA
CGCCAGACCCGGTGCAATGCATGCTGCCGATATGGTGCATTTGCGCCCTT
TGAACCGCAGCATACCGTTCTACATGCTCCTCTTGAGTGACACACCAAGT
CGGCGTGACGAGGATGACGGCTATGCTGCGAGCGACATAGATCTTAGGAG
TGCTGCACAGGTGGAGGCGGAGGTGACGGGGTTAGGGATGCTTCAAGCGG
CGTGGGAGCGTGAGGAGCTGCTGTGCGTGCGTCCTGTGGACCGTGCTCCG
GTGATACGTCTGTCGCGGACGATCGACTCCGTTGATGACTGCGACGCGTA
TCACTAA
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