EsuBft104_20a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft104_20a-0001
Unique Name	EsuBft104_20a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_255	contig	Scaffold_255:390141..398330 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G985
ProteomeId	EsuBft104_20
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2880.D7G985\|-
Length	281
Hectar predicted targeting category	other localisation
Evalue	3.98e-07
EggNOG OGs	29ZCP@1\|root,2RXW0@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft104_20a	EsuBft104_20a	Ectocarpus subulatus male Bft15b	gene	Scaffold_255 390141..398330 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_20a-0001	EsuBft104_20	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_255 390231..396870 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_20a-0001-exon	agat-exon-6705	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 390141..390460 +
EsuBft104_20a-0001-exon	agat-exon-6703	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 390652..391284 +
EsuBft104_20a-0001-exon	EsuBft104_20a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 396177..397773 +
EsuBft104_20a-0001-exon	agat-exon-6704	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 398071..398330 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_20a-0001-exon	agat-five_prime_utr-297	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_255 390141..390230 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_20a-0001-cds	EsuBft104_20a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_255 390231..390460 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_20a-0001-exon	agat-three_prime_utr-486	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_255 396871..397773 +
EsuBft104_20a-0001-exon	agat-three_prime_utr-487	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_255 398071..398330 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_255:390141..398330+
coding sequence from alignment at Scaffold_255:390141..398330+

spliced messenger RNA

>EsuBft104_20a-0001 ID=EsuBft104_20a-0001|Name=EsuBft104_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2810bp|location=Sequence derived from alignment at Scaffold_255:390141..398330+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTTTTTTTTTCTTGTTGTCGATTTCTTTGCAAATAACCGGAAAATCTTG
TTCACTTTTTCCTGGGGTGGGCTTTTGTCAGACCACAATTATGAGACCGG
GTTTCGACAGCTCTCGCGATTCCCCAGGTGGATTCTTTTTCCGATTTCGA
TTTCAGCAAAAATTGATGAAGTTTTCGCCGAAAAACTGGATTAGAGAGAC
CATTTTGTTCACTTTTTCCCTCCGACATTCAACCATAGAGCTTCAAAAAG
ACCACGGCAATCGATTCCTCTCGAAATTCCCCAGATGGAATTTTTTTTCC
GATTTTCCGAAAAAAATCTGGTTCAAAGGCAAATTTCAGAGCCATGAACC
AGCTGTCGCTGCTCCCGAGCCATTGGACGACAGCACATCTTCTCCGATGG
AAGTCGTTGACGAACCACACGACGACCACGACGAAGCCTGGTGCGACGAA
GACGCCGGTGCCGCCTCGGGTGGAAGTCAGGCCACACTGTCTTTCGGGTC
CGCTGCTGCTCTCGGTGAGTCTCCAGCAGCTTGCGCCGCACTGTCTTGGG
TTCGCGAGGTTGCGCCGCCTCGGCGTGCGGAGGGACCTTGTCGGCAGACT
CTCAGCCGTCGCAGACAGGTTGCGCTAGGGGCTGCGAAACGTCAGATGGC
GAGCTATATGGCCGGCTGGCTGACGCGTGGAGCGGAGCAGCAGTCACAGC
AGTCATTACCTCAAAGTTCGGAGACGCAACGTGCGGCGGAACCACTGCTT
GAAGAGGACGACAGCAGTGCGGTGCCTGCTGCTGCGTGCACCGCTGAGCC
AGGCAGCGACGGCGGCCGCGATAGCAACAGCGATAGCTGCAGCGAAACCG
ACATGCTTGTTGAAGATGGTGTGGATCTACCATTGCAGGAGTGGGTCGGT
GAGGGCGAGCAAGCAGAAGCGCAAGGAGCTGTGGAGGAACACTGCGACGA
TGGGGGTTCCGTGGATCATTATGACCAAAAAGTCGCATTTTGTCCAAACA
CAAAAAACTCATCGGATATCGACGCAGCTCGACGCCGCCGTCACGGCCAA
AGCAGTTTCACCTTCCAAATCGTTTTTGTTCGAAAGTTATCGCTGACAAA
CAAAATGGACAAATTGTCCTGGACTGACCATATGACAAACGTCGCGAAGA
AGAGGAGCAGTCATCCAGGGTGCATCAAGATACCATCATTTGGAAACGAC
GGTAGCAAGAAGGCGGAGTTCTGCTCTCAGCATGCGCAACAGGGTATGGT
TGACGTTTGTAGCAAGAGGTGCTGCCATCCAGATTGCACCACACGGCCGA
ACTACGGTGAGGACGGCAGCAAGAAGGCGGAGTTCTGCTCTCAGCATGCG
CGTCAGGGCATGCTTAATATTCGTAGCAAGAGGTGCTGCCATCCAAATTG
CACTAAGGGGCCGTCATTCGGCGAAGACGGCAGCAAGAATGCGGAGTTTT
GCTGTCAATATGCGCTACAGGGCATGGTTGACGTGGTCAACAGGAAGTGC
CGCCATCCAGGTTGCAAAAAGCGGGCATCATATGGGCAAGACGGCAGCAA
GAAGACGGAGCTCTGTGCCCAGCACGCGCTACGCTATGGTCAATGTAGCA
AGCGGTGCGGCCATCTACAGTGTACGAAGCGGGCGTCATACGGATAAGCC
GGCACGAAGAAGGCGGAGTTCTGCTCTCTGCACGCCAAGCGAGAAATGGT
CAATGTGCGGCATACCGCGTGCTAAAGCGCAGGGGTCGCATTGTGAGGTC
TTGCTGGGTGGGTGGCTCGATGGCACTCGGAAAAATGGTCGTGGTTTGAG
GTGCACTACGAGCGACTCCGTGAGGTTTGAACTGGATACATGGCTTCCTT
GGCATCATTCATTCTTCACGAACGTTGCCGTGGTTCGGAAGTCATGGAGT
ATGAATTGGTTGACCAATTGTCTTGCAGATACGTTGACCTCAGCATGATA
TGTGAAGACGATATATGTTGTCTGATATGGTCGGTTTTTTAGAGACATGC
ATGGATTCGGGTCGGCAAGGCGGTTCAAAAGTCAAAGCAAAACCATGTAC
CGAGTTGGAGGATCGGCTCGATGTCCCCGAATAGAACTGTGGCCAGAATG
CGACACAGATGATGAACCGCAGTTCGGTGATGGATGCCCAAGTGATAGGG
CGTCACGCGAATGTGTACCCGAAAATATTTGCAGAGTTTGCCTTGGCGTG
CACCTGGCTTGACCCTTGAGCTATGGCCGAGCGCATGCGATCAATCTGTA
GCCTTGCTTTCTTCTTGGTGCGGTTGTGGGAGCTAGTGTTGCCGCGTTCC
ATGTGTAAATCGTTGATAGATGCCTGTAAATGATACCAGGCTCAGGACCA
ATGCTGAAGGTCCACAACGAGACTTGTCTTCTTCCACATGGATGCTCATA
TGTTGCGGTTTTAGGGGCCACGAATGTCAACATTCGTAGATGGTGGTTAC
ACGATCTTCGGGGATTGGCGAAGCCTTTTGAAGCCAAGTTGGTCCGGCGC
GACTAGCGGTGTAGACCGAAGTATGTGTAGGCGAGGTCACCGTGGGGCAG
GCGAGGTCACCGTGGGGCAGGTGATTCTCCCAACATAGGTCTCACGTTGT
AGTTGACGCGTTTAACGCCAACATTGCGTTGCGAGTTGTATGTGTTTGTC
ACGACTTCACGCACGTGGAGGGTTTTGCAGATGATGGGTACGGCGAAGTT
GGAGCAAAATCGTAGTCCGTTTTCCAAGAGTATTCTTGTTGGGCAACCCC
ATAGAGGAAGAAGTATATGTCTTTGTTTTAAGCGTGATGTCTGAAGTGTG
TTCATTGTGG

protein sequence of EsuBft104_20a-0001

>EsuBft104_20 ID=EsuBft104_20|Name=EsuBft104_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=518bp
MRPGFDSSRDSPGGFFFRFRFQQKLMKFSPKNWIRETILFTFSLRHSTIE
LQKDHGNRFLSKFPRWNFFSDFPKKIWFKGKFQSHEPAVAAPEPLDDSTS
SPMEVVDEPHDDHDEAWCDEDAGAASGGSQATLSFGSAAALGESPAACAA
LSWVREVAPPRRAEGPCRQTLSRRRQVALGAAKRQMASYMAGWLTRGAEQ
QSQQSLPQSSETQRAAEPLLEEDDSSAVPAAACTAEPGSDGGRDSNSDSC
SETDMLVEDGVDLPLQEWVGEGEQAEAQGAVEEHCDDGGSVDHYDQKVAF
CPNTKNSSDIDAARRRRHGQSSFTFQIVFVRKLSLTNKMDKLSWTDHMTN
VAKKRSSHPGCIKIPSFGNDGSKKAEFCSQHAQQGMVDVCSKRCCHPDCT
TRPNYGEDGSKKAEFCSQHARQGMLNIRSKRCCHPNCTKGPSFGEDGSKN
AEFCCQYALQGMVDVVNRKCRHPGCKKRASYGQDGSKKTELCAQHALRYG
QCSKRCGHLQCTKRASYG

mRNA from alignment at Scaffold_255:390141..398330+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft104_20a-0001 ID=EsuBft104_20a-0001|Name=EsuBft104_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=8190bp|location=Sequence derived from alignment at Scaffold_255:390141..398330+ (Ectocarpus subulatus male Bft15b)
TTTTTTTTTTTCTTGTTGTCGATTTCTTTGCAAATAACCGGAAAATCTTG
TTCACTTTTTCCTGGGGTGGGCTTTTGTCAGACCACAATTATGAGACCGG
GTTTCGACAGCTCTCGCGATTCCCCAGGTGGATTCTTTTTCCGATTTCGA
TTTCAGCAAAAATTGATGAAGTTTTCGCCGAAAAACTGGATTAGAGAGAC
CATTTTGTTCACTTTTTCCCTCCGACATTCAACCATAGAGCTTCAAAAAG
ACCACGGCAATCGATTCCTCTCGAAATTCCCCAGATGGAATTTTTTTTCC
GATTTTCCGAAAAAAATCTGGTTCGCGAGATATTCGGCATTTTGTTTTGC
CGATGGGCGGCGATTTGTTCCTGCCACGCACGCACACACGCACGCACACA
CAGCGCTTGTGCGAGGGTGTGCCCTCGCCCATACGCCCTACTGCGGCACT
CAGCACCCGCAGCAGTCATGGACACGAAGAAGAAACGTGGCAGACCACCA
AAGCGAGGCAGGTTCAAAGGCAAATTTCAGAGCCATGAACCAGCTGTCGC
TGCTCCCGAGCCATTGGACGACAGCACATCTTCTCCGATGGAAGTCGTTG
ACGAACCACACGACGACCACGACGAAGCCTGGTGCGACGAAGACGCCGGT
GCCGCCTCGGGTGGAAGTCAGGCCACACTGTCTTTCGGGTCCGCTGCTGC
TCTCGGTGAGTCTCCAGCAGCTTGCGCCGCACTGTCTTGGGTTCGCGAGG
TTGCGCCGCCTCGGCGTGCGGAGGGACCTTGTCGGCAGACTCTCAGCCGT
CGCAGACAGGTTGCGCTAGGGGCTGCGAAACGTCAGATGGCGAGCTATAT
GGCCGGCTGGCTGACGCGTGGAGCGGAGCAGCAGTCACAGCAGTCATTAC
CTCAAAGTTCGGAGACGCAACGTGCGGCGGAACCACTGCTTGAAGAGGAC
GACAGCAGTGCGGTGCCTGCTGCTGCGTGCACCGCTGAGCCAGGCAGCGA
CGGCGGCCGCGATAGCAACAGCGATAGCTGCAGCGAAACCGACATGCTTG
TTGAAGATGGTGTGGATCTACCATTGCAGGAGTGGGTCGGTGAGGGCGAG
CAAGCAGAAGCGCAAGGAGCTGTGGAGGAACACTGCGACGATGGGTACTT
TTCGTGCGGAGGGTTTCTCGACGGACACGNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNTAATAATTTTTGTGTGTTTGTGTCGTGGTGTTCG
CTTTTGTAAATCGTGTCCTGTGAGGCGAGGGTTACCCGTTCAGAGCGTGT
TTGGGCTCTTACCGGACATTTACAGTGTGATTTGGGGGTTCCGTGAAGAG
GTTAGGGGGCCCCGTGGGGGGTCGGAGGGGGGGTAGGGGTTCCGTGGATC
ATTATGACCAAAAAGTCGCATTTTGTCCAAACACAAAAAACTCATCGGAT
ATCGACGCAGCTCGACGCCGCCGTCACGGCCAAAGCAGTTTCACCTTCCA
AATCGTTTTTGTTCGAAAGTTATCGCTGACAAACAAAATGGACAAATTGT
CCTGGACTGACCATATGACAAACGTCGCGAAGAAGAGGAGCAGTCATCCA
GGGTGCATCAAGATACCATCATTTGGAAACGACGGTAGCAAGAAGGCGGA
GTTCTGCTCTCAGCATGCGCAACAGGGTATGGTTGACGTTTGTAGCAAGA
GGTGCTGCCATCCAGATTGCACCACACGGCCGAACTACGGTGAGGACGGC
AGCAAGAAGGCGGAGTTCTGCTCTCAGCATGCGCGTCAGGGCATGCTTAA
TATTCGTAGCAAGAGGTGCTGCCATCCAAATTGCACTAAGGGGCCGTCAT
TCGGCGAAGACGGCAGCAAGAATGCGGAGTTTTGCTGTCAATATGCGCTA
CAGGGCATGGTTGACGTGGTCAACAGGAAGTGCCGCCATCCAGGTTGCAA
AAAGCGGGCATCATATGGGCAAGACGGCAGCAAGAAGACGGAGCTCTGTG
CCCAGCACGCGCTACGCTATGGTCAATGTAGCAAGCGGTGCGGCCATCTA
CAGTGTACGAAGCGGGCGTCATACGGATAAGCCGGCACGAAGAAGGCGGA
GTTCTGCTCTCTGCACGCCAAGCGAGAAATGGTCAATGTGCGGCATACCG
CGTGCTAAAGCGCAGGGGTCGCATTGTGAGGTCTTGCTGGGTGGGTGGCT
CGATGGCACTCGGAAAAATGGTCGTGGTTTGAGGTGCACTACGAGCGACT
CCGTGAGGTTTGAACTGGATACATGGCTTCCTTGGCATCATTCATTCTTC
ACGAACGTTGCCGTGGTTCGGAAGTCATGGAGTATGAATTGGTTGACCAA
TTGTCTTGCAGATACGTTGACCTCAGCATGATATGTGAAGACGATATATG
TTGTCTGATATGGTCGGTTTTTTAGAGACATGCATGGATTCGGGTCGGCA
AGGCGGTTCAAAAGTCAAAGCAAAACCATGTACCGAGTTGGAGGATCGGC
TCGATGTCCCCGAATAGAACTGTGGCCAGAATGCGACACAGATGATGAAC
CGCAGTTCGGTGATGGATGCCCAAGTGATAGGGCGTCACGCGAATGTGTA
CCCGAAAATATTTGCAGAGTTTGCCTTGGCGTGCACCTGGCTTGACCCTT
GAGCTATGGCCGAGCGCATGCGATCAATCTGTAGCCTTGCTTTCTTCTTG
GTGCGGTTGTGGGAGCTAGTGTTGCCGCGTTCCATGTGTAAATCGTTGAT
AGATGCCTGTAAATGATACCAGGCTCAGGACCAATGCTGAAGGTCCACAA
CGAGACTTGTCTTCTTCCACATGGATGCTCATATGTTGCGGTTTTAGGGG
CCACGAATGTCAACATTCGTAGATGGTGGTTACACGATCTTCGGGGATTG
GCGAAGCCTTTTGAAGCCAAGTTGGTCCGGCGCGACTAGCGGTGTAGACC
GAAGTATGTGTAGGCGAGGTCACCGTGGGGCAGGTGATTCTCCCAACATA
GGTCTCACGTTGTAGTTGACGCGTTTAACGCCAACATTGCGTTGCGAGTT
GTATGTGTTTGTCACGACTTCACGCACGTGGAGGGTTTTGCAGATGATGG
GTACGGCGAAGTTGGAGCAAAATCGTAGTCCGTTTTCCAAGAGGATGCTC
GCGTGTTGCGGTTTTAGGGGCCACGAATGTCAACATTCGTTGACGGTTAC
ACGTTATTCGGGGATTGGCGAAGCCTTTTGAAGCCAAGTTGGTCCGGCGC
GACTAGCGGTGTAGACCGAAGTATGTGTAGGCGAGGTCACCGTGGGGCAG
GTGATTCTCCCAACATAGGTCTCACGTTGTAGTTGACGCGTTTAACGCCA
ACATTGCGTTGCGAGTTGTATGTGTTTGTCACGACTTCACGCACGTGGAG
GGTTTTGCAGATGATGGGTACGGCGAAGTTGGAGCAAAATCGTAGTCCGT
TTTCCAAGAGTATTCTTGTTGGGCAACCCCATAGAGGAAGAAGTATATGT
CTTTGTTTTAAGCGTGATGTCTGAAGTGTGTTCATTGTGG

Coding sequence (CDS) from alignment at Scaffold_255:390141..398330+

>EsuBft104_20a-0001 ID=EsuBft104_20a-0001|Name=EsuBft104_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1557bp|location=Sequence derived from alignment at Scaffold_255:390141..398330+ (Ectocarpus subulatus male Bft15b)
ATGAGACCGGGTTTCGACAGCTCTCGCGATTCCCCAGGTGGATTCTTTTT
CCGATTTCGATTTCAGCAAAAATTGATGAAGTTTTCGCCGAAAAACTGGA
TTAGAGAGACCATTTTGTTCACTTTTTCCCTCCGACATTCAACCATAGAG
CTTCAAAAAGACCACGGCAATCGATTCCTCTCGAAATTCCCCAGATGGAA
TTTTTTTTCCGATTTTCCGAAAAAAATCTGGTTCAAAGGCAAATTTCAGA
GCCATGAACCAGCTGTCGCTGCTCCCGAGCCATTGGACGACAGCACATCT
TCTCCGATGGAAGTCGTTGACGAACCACACGACGACCACGACGAAGCCTG
GTGCGACGAAGACGCCGGTGCCGCCTCGGGTGGAAGTCAGGCCACACTGT
CTTTCGGGTCCGCTGCTGCTCTCGGTGAGTCTCCAGCAGCTTGCGCCGCA
CTGTCTTGGGTTCGCGAGGTTGCGCCGCCTCGGCGTGCGGAGGGACCTTG
TCGGCAGACTCTCAGCCGTCGCAGACAGGTTGCGCTAGGGGCTGCGAAAC
GTCAGATGGCGAGCTATATGGCCGGCTGGCTGACGCGTGGAGCGGAGCAG
CAGTCACAGCAGTCATTACCTCAAAGTTCGGAGACGCAACGTGCGGCGGA
ACCACTGCTTGAAGAGGACGACAGCAGTGCGGTGCCTGCTGCTGCGTGCA
CCGCTGAGCCAGGCAGCGACGGCGGCCGCGATAGCAACAGCGATAGCTGC
AGCGAAACCGACATGCTTGTTGAAGATGGTGTGGATCTACCATTGCAGGA
GTGGGTCGGTGAGGGCGAGCAAGCAGAAGCGCAAGGAGCTGTGGAGGAAC
ACTGCGACGATGGGGGTTCCGTGGATCATTATGACCAAAAAGTCGCATTT
TGTCCAAACACAAAAAACTCATCGGATATCGACGCAGCTCGACGCCGCCG
TCACGGCCAAAGCAGTTTCACCTTCCAAATCGTTTTTGTTCGAAAGTTAT
CGCTGACAAACAAAATGGACAAATTGTCCTGGACTGACCATATGACAAAC
GTCGCGAAGAAGAGGAGCAGTCATCCAGGGTGCATCAAGATACCATCATT
TGGAAACGACGGTAGCAAGAAGGCGGAGTTCTGCTCTCAGCATGCGCAAC
AGGGTATGGTTGACGTTTGTAGCAAGAGGTGCTGCCATCCAGATTGCACC
ACACGGCCGAACTACGGTGAGGACGGCAGCAAGAAGGCGGAGTTCTGCTC
TCAGCATGCGCGTCAGGGCATGCTTAATATTCGTAGCAAGAGGTGCTGCC
ATCCAAATTGCACTAAGGGGCCGTCATTCGGCGAAGACGGCAGCAAGAAT
GCGGAGTTTTGCTGTCAATATGCGCTACAGGGCATGGTTGACGTGGTCAA
CAGGAAGTGCCGCCATCCAGGTTGCAAAAAGCGGGCATCATATGGGCAAG
ACGGCAGCAAGAAGACGGAGCTCTGTGCCCAGCACGCGCTACGCTATGGT
CAATGTAGCAAGCGGTGCGGCCATCTACAGTGTACGAAGCGGGCGTCATA
CGGATAA