EsuBft104_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft104_19a-0001
Unique Name	EsuBft104_19a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_255	contig	Scaffold_255:399908..404450 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FXD3
ProteomeId	EsuBft104_19
Protein domains	PTHR19303
Owner	apollo_admin@sb-roscoff.fr
Note	pogo transposable element with krab domain os:homo sapiens gn:pogk pe:1 sv:2 [Automatic annotation]
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	4117
Hectar predicted targeting category	other localisation
Evalue	4.25e-53
EggNOG OGs	KOG3105@1\|root,KOG3105@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	POGK
KEGG ko	ko:K09228
Description	DNA binding
COG category	CH
BRITE	ko00000,ko03000

Cross References

External references for this mRNA


Database	Accession
GO	0005488

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft104_19a	EsuBft104_19a	Ectocarpus subulatus male Bft15b	gene	Scaffold_255 399908..404450 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_19a-0001	EsuBft104_19	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_255 400157..401614 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_19a-0001-exon	agat-exon-6702	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 399908..400403 +
EsuBft104_19a-0001-exon	agat-exon-6701	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 400487..401137 +
EsuBft104_19a-0001-exon	EsuBft104_19a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 401481..404450 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_19a-0001-exon	agat-five_prime_utr-296	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_255 399908..400156 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_19a-0001-cds	EsuBft104_19a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_255 400157..400403 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_19a-0001-exon	agat-three_prime_utr-485	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_255 401615..404450 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_255:399908..404450+
coding sequence from alignment at Scaffold_255:399908..404450+

spliced messenger RNA

>EsuBft104_19a-0001 ID=EsuBft104_19a-0001|Name=EsuBft104_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4117bp|location=Sequence derived from alignment at Scaffold_255:399908..404450+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCTGTGCCAAGACCCCGATATGTGCGATCCTAACGTTGAAAACCACATG
GGATAGCAGCACTTCGCGTGTATGGTATTGCTGCAACACCATCACAACAC
AACCAACAGACAAGCTAGTAGCTGCACACACAAACGAGTCTCGGGGAATT
GCCACCACAACAGCTCCGTGGCGGAGAAATACCGGCGGAAAATCGGGAAA
ATGCCCGGGACGCAGCTGCGGGCTCGACCACACGCAACGCGCGGCTACGA
TGTCGGAGGGTGCAAGCGCGGGACCTGCCGACGCTTCACAGGCCTCACAG
GCTACTGCTGGCGGTCCTTCCTCTGCGGATCAGGGAGCTGCCGCTGCGGA
CCCGAAGGCAACCGGCGAGGCTATCGATGAGATGCTAGCCGCCAACGACC
CCGTCAAAAACAGCAACGGCAAACGCGCATACCCGGAGCCTAACGTCCCG
ATCGAGCGGTCAGGAGCAGTGGGAGGGAAAGGGAGCTACCCCATCGTTCT
CCAGGTGCCTCGGAAGCGTATCATCGAGTGGCTGAAGCAGGAGGAGCAGC
TCAGGGAGAAGGTCAGCGCCAACCCCAAGCTTTCGAAGGCCAAGCAGCTT
CATAGCGGAGGGAAAGCTCCGACAGTCGACGCCGAACAAGCCCTTGTGGA
CTACATCAACGAGCAGCGCAAGCAGCGCCGCGGTTGTGGTAATCGGGAGG
TGATGAACAGGCTGCTCGAGCTGAAGCCTAGCGCCCTTGGCCGGATGCCG
GCGAACGCGAAACCGGAGGAGGCGCTGGCTTTCAAGGTCAAATTCAACTC
CTGGTACCAAAGGTTCCGCAAGCGGAATGGGTTCAGCATCCGCCGGCGTA
CCAGCGTGGGCCAGAAACTGCTGAAGGGGTACGAGGGTATGGCGTGGGCG
ACGGTGATGAAGCTGCGCGAGGCTCTCGTAAAGCGCGCCGGTGAGATCTA
CGCTCGGCGCCACCCGCCGGCACCTGACGAGAGCCCCATCAAAGGGGAGG
ATCTGACTTCCGAGCAGCTGGCGTCTGTGGAGGCGGAGGTTTTCGAGGAA
CTCGGCAACATGGACCAGACGCCAGTCCAGCACGAGATGCCGGTGGAGAT
CACTCTGGAGAAGACTGGTGCGAAGAATGCTCGCATCAGTACAGGAGCGA
AGGAACGCTTCACGCTCGATTTGGCTGTCATGGCGGACGGCAAAAAGGTT
TCGCCATGCATCATCTTCAAGGACACGCTGTTCATCCCCCCGACCGTGAG
CGGCAAGGGCAAGAGCACCCTGCCGCGNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNGCCAAACATGGCCATCACGAGGAACA
TGTCCTCCTCTCCAGCTAGCGCGCACAACAGCAAGCAGTAGAACCTGCAT
GCACTCATCATACCACTCGCAGCGGATTCTAACTCGCGCAAGGTGCGCCA
TCCCCTCGCTTCGTGTCGGGTGCGGTGATGAGGGAGCGCGACCGTTGGGT
TCCCGGTGGTGCAGCGGTGCAGCTGGGGTTGATTTTTTTTTAACTTGAGG
CTGCGCCGCTGCTGGCCTTCGCCAGGCAACGTGCGGCGGAATATTTTTTC
GTGTCAATTTACCAACCGTTACCTTTTTTCGTGTCAATTTGCCAACCGTC
ACTTTTTTTGGTGTCAATCTCTCTCAGTCCAAAATTTTCGCGTCAATTTA
ACGTGGGAACCAGGACT

protein sequence of EsuBft104_19a-0001

>EsuBft104_19 ID=EsuBft104_19|Name=EsuBft104_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=344bp
MSEGASAGPADASQASQATAGGPSSADQGAAAADPKATGEAIDEMLAAND
PVKNSNGKRAYPEPNVPIERSGAVGGKGSYPIVLQVPRKRIIEWLKQEEQ
LREKVSANPKLSKAKQLHSGGKAPTVDAEQALVDYINEQRKQRRGCGNRE
VMNRLLELKPSALGRMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRR
TSVGQKLLKGYEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGE
DLTSEQLASVEAEVFEELGNMDQTPVQHEMPVEITLEKTGAKNARISTGA
KERFTLDLAVMADGKKVSPCIIFKDTLFIPPTVSGKGKSTLPRX

mRNA from alignment at Scaffold_255:399908..404450+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft104_19a-0001 ID=EsuBft104_19a-0001|Name=EsuBft104_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4543bp|location=Sequence derived from alignment at Scaffold_255:399908..404450+ (Ectocarpus subulatus male Bft15b)
CCCTGTGCCAAGACCCCGATATGTGCGATCCTAACGTTGAAAACCACATG
GGATAGCAGCACTTCGCGTGTATGGTATTGCTGCAACACCATCACAACAC
AACCAACAGACAAGCTAGTAGCTGCACACACAAACGAGTCTCGGGGAATT
GCCACCACAACAGCTCCGTGGCGGAGAAATACCGGCGGAAAATCGGGAAA
ATGCCCGGGACGCAGCTGCGGGCTCGACCACACGCAACGCGCGGCTACGA
TGTCGGAGGGTGCAAGCGCGGGACCTGCCGACGCTTCACAGGCCTCACAG
GCTACTGCTGGCGGTCCTTCCTCTGCGGATCAGGGAGCTGCCGCTGCGGA
CCCGAAGGCAACCGGCGAGGCTATCGATGAGATGCTAGCCGCCAACGACC
CCGTCAAAAACAGCAACGGCAAACGCGCATACCCGGAGCCTAACGTCCCG
ATCGAGCGGTCAGGAGCAGTGGGAGGGAAAGGGAGCTACCCCATCGGTTC
AAACTGAACGAGGCGGCCTGCACACGGGAGATCTGCCCGTGCGGCGGTCA
ACCGGTGGGAAACAACGGCGCGGCGAAAGTTCTCCAGGTGCCTCGGAAGC
GTATCATCGAGTGGCTGAAGCAGGAGGAGCAGCTCAGGGAGAAGGTCAGC
GCCAACCCCAAGCTTTCGAAGGCCAAGCAGCTTCATAGCGGAGGGAAAGC
TCCGACAGTCGACGCCGAACAAGCCCTTGTGGACTACATCAACGAGCAGC
GCAAGCAGCGCCGCGGTTGTGGTAATCGGGAGGTGATGAACAGGCTGCTC
GAGCTGAAGCCTAGCGCCCTTGGCCGGATGCCGGCGAACGCGAAACCGGA
GGAGGCGCTGGCTTTCAAGGTCAAATTCAACTCCTGGTACCAAAGGTTCC
GCAAGCGGAATGGGTTCAGCATCCGCCGGCGTACCAGCGTGGGCCAGAAA
CTGCTGAAGGGGTACGAGGGTATGGCGTGGGCGACGGTGATGAAGCTGCG
CGAGGCTCTCGTAAAGCGCGCCGGTGAGATCTACGCTCGGCGCCACCCGC
CGGCACCTGACGAGAGCCCCATCAAAGGGGAGGATCTGACTTCCGAGCAG
CTGGCGTCTGTGGAGGCGGAGGTTTTCGAGGAACTCGGCAACATGGACCA
GACGCCAGTCCAGCACGAGATGCCGGTGGAGATCACTCTGGAGAAGACTG
GTGCGAAGAATGCTCGCATCAGTACAGGAGGTGAGGGCGAGCTAATATTT
TTGTCAAAATTTTGTGTGGTGTGCGGATTTTTTGTCGTTGTACAATAATA
TTTCGACACATGTTTTTTTTTTGCGTGCCGGTACACGGTGCGATGTAGCT
CTATCGGTAGAGACAGGAGGGTTGCTACCTTTTTCTGCGGGATAATTCTA
CACTTCCTTTTTCAATGCATCCAAACTATCAACCAACTTAGTTTTCGAAA
CGTCCGATACCGTTCGCATCCATTGTATCAACCACACACTGCTGTCCTCG
CAGAAATATTCAACACTCTACTCCCCCCCCCCCTCCCCTCGCGTTGATTT
TGTCCCCCTCCCCTCGGGCAAAGCGAAGGAACGCTTCACGCTCGATTTGG
CTGTCATGGCGGACGGCAAAAAGGTTTCGCCATGCATCATCTTCAAGGAC
ACGCTGTTCATCCCCCCGACCGTGAGCGGCAAGGGCAAGAGCACCCTGCC
GCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GCCAAACATGGCCATCACGAGGAACATGTCCTCCTCTCCAGCTAGCGCGC
ACAACAGCAAGCAGTAGAACCTGCATGCACTCATCATACCACTCGCAGCG
GATTCTAACTCGCGCAAGGTGCGCCATCCCCTCGCTTCGTGTCGGGTGCG
GTGATGAGGGAGCGCGACCGTTGGGTTCCCGGTGGTGCAGCGGTGCAGCT
GGGGTTGATTTTTTTTTAACTTGAGGCTGCGCCGCTGCTGGCCTTCGCCA
GGCAACGTGCGGCGGAATATTTTTTCGTGTCAATTTACCAACCGTTACCT
TTTTTCGTGTCAATTTGCCAACCGTCACTTTTTTTGGTGTCAATCTCTCT
CAGTCCAAAATTTTCGCGTCAATTTAACGTGGGAACCAGGACT

Coding sequence (CDS) from alignment at Scaffold_255:399908..404450+

>EsuBft104_19a-0001 ID=EsuBft104_19a-0001|Name=EsuBft104_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1032bp|location=Sequence derived from alignment at Scaffold_255:399908..404450+ (Ectocarpus subulatus male Bft15b)
ATGTCGGAGGGTGCAAGCGCGGGACCTGCCGACGCTTCACAGGCCTCACA
GGCTACTGCTGGCGGTCCTTCCTCTGCGGATCAGGGAGCTGCCGCTGCGG
ACCCGAAGGCAACCGGCGAGGCTATCGATGAGATGCTAGCCGCCAACGAC
CCCGTCAAAAACAGCAACGGCAAACGCGCATACCCGGAGCCTAACGTCCC
GATCGAGCGGTCAGGAGCAGTGGGAGGGAAAGGGAGCTACCCCATCGTTC
TCCAGGTGCCTCGGAAGCGTATCATCGAGTGGCTGAAGCAGGAGGAGCAG
CTCAGGGAGAAGGTCAGCGCCAACCCCAAGCTTTCGAAGGCCAAGCAGCT
TCATAGCGGAGGGAAAGCTCCGACAGTCGACGCCGAACAAGCCCTTGTGG
ACTACATCAACGAGCAGCGCAAGCAGCGCCGCGGTTGTGGTAATCGGGAG
GTGATGAACAGGCTGCTCGAGCTGAAGCCTAGCGCCCTTGGCCGGATGCC
GGCGAACGCGAAACCGGAGGAGGCGCTGGCTTTCAAGGTCAAATTCAACT
CCTGGTACCAAAGGTTCCGCAAGCGGAATGGGTTCAGCATCCGCCGGCGT
ACCAGCGTGGGCCAGAAACTGCTGAAGGGGTACGAGGGTATGGCGTGGGC
GACGGTGATGAAGCTGCGCGAGGCTCTCGTAAAGCGCGCCGGTGAGATCT
ACGCTCGGCGCCACCCGCCGGCACCTGACGAGAGCCCCATCAAAGGGGAG
GATCTGACTTCCGAGCAGCTGGCGTCTGTGGAGGCGGAGGTTTTCGAGGA
ACTCGGCAACATGGACCAGACGCCAGTCCAGCACGAGATGCCGGTGGAGA
TCACTCTGGAGAAGACTGGTGCGAAGAATGCTCGCATCAGTACAGGAGCG
AAGGAACGCTTCACGCTCGATTTGGCTGTCATGGCGGACGGCAAAAAGGT
TTCGCCATGCATCATCTTCAAGGACACGCTGTTCATCCCCCCGACCGTGA
GCGGCAAGGGCAAGAGCACCCTGCCGCGNNNN