EsuBft104_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft104_18a-0001
Unique NameEsuBft104_18a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_255contigScaffold_255:420335..422855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft104_18
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length174
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft104_18aEsuBft104_18aEctocarpus subulatus male Bft15bgeneScaffold_255 420335..422855 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_18a-0001-exonagat-exon-6699Ectocarpus subulatus male Bft15bexonScaffold_255 420335..421291 -
EsuBft104_18a-0001-exonEsuBft104_18a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_255 422021..422742 -
EsuBft104_18a-0001-exonagat-exon-6700Ectocarpus subulatus male Bft15bexonScaffold_255 422793..422855 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_18a-0001-exonagat-three_prime_utr-484Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_255 420335..421281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_18a-0001-cdsEsuBft104_18a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_255 421282..421291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_18a-0001EsuBft104_18Ectocarpus subulatus male Bft15bpolypeptideScaffold_255 421282..422855 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft104_18a-0001 ID=EsuBft104_18a-0001|Name=EsuBft104_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1742bp|location=Sequence derived from alignment at Scaffold_255:420335..422855- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACTCGCTCGGCGACTGCAATGCGCCGCGATGCTTTGAAGGCAAC
TGTACTGCCTGCGCACGTGCACGTCGGTGACGGAGAAGGTCTGGACGCGA
GTGGCAACGACGCTAAGCCGTACCAGCAGCGGAAGCGACGACGCTGGAGG
AGGCAAAGGCAGCGGAGCGGGCGACAGTCGGAACTTCTCCCGGAGGCTGG
TTTGTGGGGGGGGCAGCCGGAATACCCGCATCTGCAGCCCGAGCAACCGT
ACTCGCAAAGGAATCGACCGGAGGCGCTCCCCGTGTGTGCAGCTGGAGGG
ATGGCATGGGAAACAGCACCTGTGGCGGGAGCGGCGACTGGTGGTGGTGA
TTTCCCCGCTATGGCGGCGGGCGGGGGGGGCGGTCGGGGCGCAGGCACTC
GCGGTCGGAGCGGCGGCATTGCCAGCAACACCGGCGGTGAGAGCGGCGAC
CCCCCGCAGCAGAGTCTTCCCCGCGGCGGCGGCGGTGCGAGGGGCGGCTG
GGGTGCAGGCACGTGGGACTGGAGAACAGTATGGGTGGTGGCACCGGCGA
CATCGTCGACCGGCGGCCCAGTAGCCCCCGCTGTACTAACGGGCGAGGGC
GTCACAGCGCCCACATCAGCAGCTACACTGGCATCAGCAGCGCAAGAGGT
GGAGGACGAGTGCGAGGAGGATAGTCGTTGGTTGGAAAATGAGGATAAAC
GCGGCAAAATCAGCAACGGCAGCGGCGACGGCAGCATCGTGGCGTTGTCT
GCTGGTGCTGAGCATTCCGGCGCCCATCCGACCGTGACGGATTGAGTTCC
ATGGTCGGAGATATGTTGAAGGGGGACTGTCAATCGATATACATTTGTTT
GGAGTGCTCTGCTTGGAGTGCTCGGCAGAGTATACTGCCTACGGGGCTTA
CGGGGGGGTACGCGGATGAAATGTGTTGGTGGGCATGCTGCATAGCGATG
GTGTTGCCTACCGCATGTCTCTCACTCTCCAAGCAACAAGGTCTTGAATC
AATCATCTTTCTCTTTCGGCCTCTGACGAGCTACCGCACCCAAACACAAT
ATATTGCAAGGCCTGGTGTTGGTAGTGGGTGTTGGCGTTTGAGCGGTGGG
AGCTGGGCCATCGGGGCAGCGGACTCCATTTTCATAGCTGGGATCGCGGC
CAAAGGCGGCGAGGAAAGCAGTGCATAGCTGGTGCGGTGGCCATTGCGGG
GACCGGGACAGCGGGGCTAATAGCTGGGACAGCACTTCGAGGCTGGGACA
GCAGGGAGGGTTTAGAATTATAGTTTGATTGATATGTCTGGAACTGAGGA
GGAAACAGCTCTGCGCGCTAGGTTGGATGAGGCGCTACGAGCTATAGATG
CTGTCAAGGCTGAGACGAAGTAGGCCAAGGCTGAGACGGAGGAGGTTAGG
GCAGCACAGAGGCGGTCGGCGGGTGCACCTGCCGGCAGCAGCAGCCCAGG
AGGCGATTGTCTAGTTGCTCCTGGAGGGGCTTCATCTGCACCGGTGAGGC
CAATGTGGCCAGGCGCGGTGAGTCATGATGGCGGTACTGGGGTGCCGGGT
TTGCCTCTGGGAGATACAATTGTTAGAACTCCTGTGCCTAGAATCCCGGC
AAATTGCACCACCGACACCTTTCTCAGTTGGCGGAGACGCTGTCTGACCT
ACGTGGACAACCATTATCTCCAGTACACAATCTCCGGCAGTGCTTAGGTT
CCCGTTGTCAGTTGTCAAGATGAAGGATACTTGACTCGCCAG
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protein sequence of EsuBft104_18a-0001

>EsuBft104_18 ID=EsuBft104_18|Name=EsuBft104_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=264bp
MDTRSATAMRRDALKATVLPAHVHVGDGEGLDASGNDAKPYQQRKRRRWR
RQRQRSGRQSELLPEAGLWGGQPEYPHLQPEQPYSQRNRPEALPVCAAGG
MAWETAPVAGAATGGGDFPAMAAGGGGGRGAGTRGRSGGIASNTGGESGD
PPQQSLPRGGGGARGGWGAGTWDWRTVWVVAPATSSTGGPVAPAVLTGEG
VTAPTSAATLASAAQEVEDECEEDSRWLENEDKRGKISNGSGDGSIVALS
AGAEHSGAHPTVTD
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mRNA from alignment at Scaffold_255:420335..422855-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft104_18a-0001 ID=EsuBft104_18a-0001|Name=EsuBft104_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2521bp|location=Sequence derived from alignment at Scaffold_255:420335..422855- (Ectocarpus subulatus male Bft15b)
ATGGACACTCGCTCGGCGACTGCAATGCGCCGCGATGCTTTGAAGGCAAC
TGTACTGCCTGCGGTGAGTACGGCCATCGGCGCCGCATGTGTACAATCGG
TCGCATGCAACAGCACGTGCACGTCGGTGACGGAGAAGGTCTGGACGCGA
GTGGCAACGACGCTAAGCCGTACCAGCAGCGGAAGCGACGACGCTGGAGG
AGGCAAAGGCAGCGGAGCGGGCGACAGTCGGAACTTCTCCCGGAGGCTGG
TTTGTGGGGGGGGCAGCCGGAATACCCGCATCTGCAGCCCGAGCAACCGT
ACTCGCAAAGGAATCGACCGGAGGCGCTCCCCGTGTGTGCAGCTGGAGGG
ATGGCATGGGAAACAGCACCTGTGGCGGGAGCGGCGACTGGTGGTGGTGA
TTTCCCCGCTATGGCGGCGGGCGGGGGGGGCGGTCGGGGCGCAGGCACTC
GCGGTCGGAGCGGCGGCATTGCCAGCAACACCGGCGGTGAGAGCGGCGAC
CCCCCGCAGCAGAGTCTTCCCCGCGGCGGCGGCGGTGCGAGGGGCGGCTG
GGGTGCAGGCACGTGGGACTGGAGAACAGTATGGGTGGTGGCACCGGCGA
CATCGTCGACCGGCGGCCCAGTAGCCCCCGCTGTACTAACGGGCGAGGGC
GTCACAGCGCCCACATCAGCAGCTACACTGGCATCAGCAGCGCAAGAGGT
GGAGGACGAGTGCGAGGAGGATAGTCGTTGGTTGGAAAATGAGGATAAAC
GCGGCAAAATCAGCAACGGCAGCGGCGACGGCAGCATCGTGGCGTTGTCT
GCTGGTGCTGAGCATTCCGGCGCCCATCCGACCGTGTACATGGTATCTGC
GTGTTGCGGGATGATGGGGGGTAAAGCCAAGAAAGGAAAATCGATCCTGG
CTGGAAGTGTGCGGCACGATTTGAGAGGACTCGTGCTCGGAAGATACCGT
GCGGGATGGTTGCACGCTGGGTCTACGCACGATTCAGGCACGTTCGTGAG
AAGTATTGTATTCATTTGGCTATCTATTTTCTAGGTCGGTTTTGTTCATT
GAAAGCCATAAGTTTGAGAACTGCGTCGATGTATGCTGTTGTGTTGCGAT
GCGCACGAACGAACGTGGTGTTTATGGTCTGTGGTACATTGTGTTTTTCA
TTTGTGGGATATGGTTTGCATAGTCTAGGACTTCACGGCGCCGAATGGTG
CAGTTGATGTTGTTGGGTCGCAGCTAGCACTGCTGTAGAAAATCATGGGG
GGGATGAATGTGATGTTGAGATGCCATGACCTTCGCCGCAGTACGAGCAG
AGTTCTAGCGGACGTTCGGGTTTGATTTTCATTTTTCACGTCTTCCGCGT
TTTACCTGCGGAAGATGAGAAGTCCTCAATTCTTGTTTGTTTGCGGTTTC
GCGTTTACCTGCGAAGTTTGAGGAAACTTCATGATACTTGTCTGATTCCT
CGTTGCTAGGACAAGAAACGTATTTCTTGTTTATTCGAGATTCCGCGTTT
TTCAGCATATTTGTTTGATTTCTCGTTGTCAGGATTCGAGTGTTTCTTGA
ATTTGTTGCTGTAGGACGGATTGAGTTCCATGGTCGGAGATATGTTGAAG
GGGGACTGTCAATCGATATACATTTGTTTGGAGTGCTCTGCTTGGAGTGC
TCGGCAGAGTATACTGCCTACGGGGCTTACGGGGGGGTACGCGGATGAAA
TGTGTTGGTGGGCATGCTGCATAGCGATGGTGTTGCCTACCGCATGTCTC
TCACTCTCCAAGCAACAAGGTCTTGAATCAATCATCTTTCTCTTTCGGCC
TCTGACGAGCTACCGCACCCAAACACAATATATTGCAAGGCCTGGTGTTG
GTAGTGGGTGTTGGCGTTTGAGCGGTGGGAGCTGGGCCATCGGGGCAGCG
GACTCCATTTTCATAGCTGGGATCGCGGCCAAAGGCGGCGAGGAAAGCAG
TGCATAGCTGGTGCGGTGGCCATTGCGGGGACCGGGACAGCGGGGCTAAT
AGCTGGGACAGCACTTCGAGGCTGGGACAGCAGGGAGGGTTTAGAATTAT
AGTTTGATTGATATGTCTGGAACTGAGGAGGAAACAGCTCTGCGCGCTAG
GTTGGATGAGGCGCTACGAGCTATAGATGCTGTCAAGGCTGAGACGAAGT
AGGCCAAGGCTGAGACGGAGGAGGTTAGGGCAGCACAGAGGCGGTCGGCG
GGTGCACCTGCCGGCAGCAGCAGCCCAGGAGGCGATTGTCTAGTTGCTCC
TGGAGGGGCTTCATCTGCACCGGTGAGGCCAATGTGGCCAGGCGCGGTGA
GTCATGATGGCGGTACTGGGGTGCCGGGTTTGCCTCTGGGAGATACAATT
GTTAGAACTCCTGTGCCTAGAATCCCGGCAAATTGCACCACCGACACCTT
TCTCAGTTGGCGGAGACGCTGTCTGACCTACGTGGACAACCATTATCTCC
AGTACACAATCTCCGGCAGTGCTTAGGTTCCCGTTGTCAGTTGTCAAGAT
GAAGGATACTTGACTCGCCAG
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Coding sequence (CDS) from alignment at Scaffold_255:420335..422855-

>EsuBft104_18a-0001 ID=EsuBft104_18a-0001|Name=EsuBft104_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=795bp|location=Sequence derived from alignment at Scaffold_255:420335..422855- (Ectocarpus subulatus male Bft15b)
ATGGACACTCGCTCGGCGACTGCAATGCGCCGCGATGCTTTGAAGGCAAC
TGTACTGCCTGCGCACGTGCACGTCGGTGACGGAGAAGGTCTGGACGCGA
GTGGCAACGACGCTAAGCCGTACCAGCAGCGGAAGCGACGACGCTGGAGG
AGGCAAAGGCAGCGGAGCGGGCGACAGTCGGAACTTCTCCCGGAGGCTGG
TTTGTGGGGGGGGCAGCCGGAATACCCGCATCTGCAGCCCGAGCAACCGT
ACTCGCAAAGGAATCGACCGGAGGCGCTCCCCGTGTGTGCAGCTGGAGGG
ATGGCATGGGAAACAGCACCTGTGGCGGGAGCGGCGACTGGTGGTGGTGA
TTTCCCCGCTATGGCGGCGGGCGGGGGGGGCGGTCGGGGCGCAGGCACTC
GCGGTCGGAGCGGCGGCATTGCCAGCAACACCGGCGGTGAGAGCGGCGAC
CCCCCGCAGCAGAGTCTTCCCCGCGGCGGCGGCGGTGCGAGGGGCGGCTG
GGGTGCAGGCACGTGGGACTGGAGAACAGTATGGGTGGTGGCACCGGCGA
CATCGTCGACCGGCGGCCCAGTAGCCCCCGCTGTACTAACGGGCGAGGGC
GTCACAGCGCCCACATCAGCAGCTACACTGGCATCAGCAGCGCAAGAGGT
GGAGGACGAGTGCGAGGAGGATAGTCGTTGGTTGGAAAATGAGGATAAAC
GCGGCAAAATCAGCAACGGCAGCGGCGACGGCAGCATCGTGGCGTTGTCT
GCTGGTGCTGAGCATTCCGGCGCCCATCCGACCGTGACGGATTGA
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