EsuBft104_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft104_15a-0001
Unique NameEsuBft104_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_255contigScaffold_255:462514..462750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FH65
ProteomeIdEsuBft104_15
Protein domainsIPR003495
Protein domainsIPR027417
Protein domainsPTHR13748
Ownerapollo_admin@sb-roscoff.fr
Noteuncharacterized gtp-binding protein os:escherichia coli (strain k12) gn:yjia pe:1 sv:3 [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length237
Hectar predicted targeting categoryother localisation
Evalue1.37e-35
EggNOG OGsCOG0523@1|root,KOG2743@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionATP binding
COG categoryF
Cross References
External references for this mRNA
DatabaseAccession
GO0006974
GO0005525
GO0042802
GO0033014
GO0003924
GO0006184
GO0046914
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft104_15aEsuBft104_15aEctocarpus subulatus male Bft15bgeneScaffold_255 462514..462750 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_15a-0001-exonEsuBft104_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_255 462514..462750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_15a-0001-cdsEsuBft104_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_255 462514..462750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_15a-0001EsuBft104_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_255 462514..462750 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft104_15a-0001 ID=EsuBft104_15a-0001|Name=EsuBft104_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=237bp|location=Sequence derived from alignment at Scaffold_255:462514..462750- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGGCTCAGATGACTCTCGTATCCCCGTGACCATCCTGACGGGTTT
CCTCGGATCCGGCAAGACCACGCTCCTGAACCACATCCTGGCCGACAACA
CCCATGGTCTGCGTTTCGCGATCATCGAGAACGAGTTCGGCGAGGTCGGC
ATCGACGAGAAGCTGATCGCCTCGAAGGCTGGTCAGAAAGCCGAGTGCGA
CACTGAGGAGGTGATGTGGAATCTGAGGTTATACTAG
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protein sequence of EsuBft104_15a-0001

>EsuBft104_15 ID=EsuBft104_15|Name=EsuBft104_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=78bp
MPGSDDSRIPVTILTGFLGSGKTTLLNHILADNTHGLRFAIIENEFGEVG
IDEKLIASKAGQKAECDTEEVMWNLRLY
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mRNA from alignment at Scaffold_255:462514..462750-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft104_15a-0001 ID=EsuBft104_15a-0001|Name=EsuBft104_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=237bp|location=Sequence derived from alignment at Scaffold_255:462514..462750- (Ectocarpus subulatus male Bft15b)
ATGCCCGGCTCAGATGACTCTCGTATCCCCGTGACCATCCTGACGGGTTT
CCTCGGATCCGGCAAGACCACGCTCCTGAACCACATCCTGGCCGACAACA
CCCATGGTCTGCGTTTCGCGATCATCGAGAACGAGTTCGGCGAGGTCGGC
ATCGACGAGAAGCTGATCGCCTCGAAGGCTGGTCAGAAAGCCGAGTGCGA
CACTGAGGAGGTGATGTGGAATCTGAGGTTATACTAG
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Coding sequence (CDS) from alignment at Scaffold_255:462514..462750-

>EsuBft104_15a-0001 ID=EsuBft104_15a-0001|Name=EsuBft104_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=237bp|location=Sequence derived from alignment at Scaffold_255:462514..462750- (Ectocarpus subulatus male Bft15b)
ATGCCCGGCTCAGATGACTCTCGTATCCCCGTGACCATCCTGACGGGTTT
CCTCGGATCCGGCAAGACCACGCTCCTGAACCACATCCTGGCCGACAACA
CCCATGGTCTGCGTTTCGCGATCATCGAGAACGAGTTCGGCGAGGTCGGC
ATCGACGAGAAGCTGATCGCCTCGAAGGCTGGTCAGAAAGCCGAGTGCGA
CACTGAGGAGGTGATGTGGAATCTGAGGTTATACTAG
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