EsuBft104_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft104_13a-0001
Unique Name	EsuBft104_13a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_255	contig	Scaffold_255:485110..486162 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft104_13
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	105
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft104_13a	EsuBft104_13a	Ectocarpus subulatus male Bft15b	gene	Scaffold_255 485110..486162 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_13a-0001-exon	EsuBft104_13a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 485110..486162 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_13a-0001-cds	EsuBft104_13a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_255 485110..485418 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_13a-0001-exon	agat-three_prime_utr-480	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_255 485419..486162 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_13a-0001	EsuBft104_13	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_255 485110..485418 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_255:485110..486162+
coding sequence from alignment at Scaffold_255:485110..486162+

spliced messenger RNA

>EsuBft104_13a-0001 ID=EsuBft104_13a-0001|Name=EsuBft104_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1053bp|location=Sequence derived from alignment at Scaffold_255:485110..486162+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCGAGTGGAAACGGCGGGGGACAGGACGGAGACGGAGGCGCCCGG
AGTCGGAGCAGGAGCAAAGGGAGATGAAACAAGAAAGCAGGAGAGAGAGG
AGCCGACAGCGACCACTGCTACCTACATCCGCACTTGTCCCACACCAACG
CCCAGTGCCACACTCAACGCGACCGTCAGAAGAAAAAGGAGCAACAGCAG
TTTCAGCCGCAGCAGCCGCAGCAGCTGCAGCAACACTTCACCCATGCCCC
TCCCCAGTCGCCTTCTCCCGGAGCAGCAGCTTTTCCGCCTGGGCATCTGC
ACTCCCTGATGGCACACTTTGTGTCCGCTGACGAGATGAGTTCGCTTTCG
GTTTCGAGTGATGTAGGCAGTGTCGCATGTGGTGATCTTGGTTTTGCTTT
GTCTGCCCAGAGTTGCGATTACAGTCCTGGTAGGGAGGTATTTTGGTCGG
ATAGCGGTGCAAGCAACCATTTTGTGAGGAACAGCTCCAAAATGCACAAC
ATCTCGCCTGTTTCCCCCGGCAAAGAATGCATCAGAGTAGGCAATGGTGC
TCATTTGCGCGTGGAGTGTGTGGGTAGTGTCAATCTGGCATTCCATATGG
CAGGAGGCCGCTCGGGAGAAGTGGATTTTTGTGCCCAATTGACAGACGTG
TACGTAGTGCCAGGAATTTCGTTCAACTTGTTCTCCCTGCACCAAACGCA
GAAAAAGCACAGGATAATGTTGGATGAGAGGGGTGTGCACCTTTCGGCGG
TCGGCTTAGTTTCGCATATTCGGATATCGGATGGTCTCTATCGGCCACCC
GCTTGCCCCCCTCGTACCGCGACGGTGATGTAATCCCCTCTACCGTTGTC
CCTCCCCCCGTTGTCCGCTAAGCGTCTCCGCCTGGCGTTGGCACTGGCCT
ATTCGCCCAAAACCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNN

protein sequence of EsuBft104_13a-0001

>EsuBft104_13 ID=EsuBft104_13|Name=EsuBft104_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=102bp
MGRVETAGDRTETEAPGVGAGAKGDETRKQEREEPTATTATYIRTCPTPT
PSATLNATVRRKRSNSSFSRSSRSSCSNTSPMPLPSRLLPEQQLFRLGIC
TP

mRNA from alignment at Scaffold_255:485110..486162+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft104_13a-0001 ID=EsuBft104_13a-0001|Name=EsuBft104_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1053bp|location=Sequence derived from alignment at Scaffold_255:485110..486162+ (Ectocarpus subulatus male Bft15b)
ATGGGTCGAGTGGAAACGGCGGGGGACAGGACGGAGACGGAGGCGCCCGG
AGTCGGAGCAGGAGCAAAGGGAGATGAAACAAGAAAGCAGGAGAGAGAGG
AGCCGACAGCGACCACTGCTACCTACATCCGCACTTGTCCCACACCAACG
CCCAGTGCCACACTCAACGCGACCGTCAGAAGAAAAAGGAGCAACAGCAG
TTTCAGCCGCAGCAGCCGCAGCAGCTGCAGCAACACTTCACCCATGCCCC
TCCCCAGTCGCCTTCTCCCGGAGCAGCAGCTTTTCCGCCTGGGCATCTGC
ACTCCCTGATGGCACACTTTGTGTCCGCTGACGAGATGAGTTCGCTTTCG
GTTTCGAGTGATGTAGGCAGTGTCGCATGTGGTGATCTTGGTTTTGCTTT
GTCTGCCCAGAGTTGCGATTACAGTCCTGGTAGGGAGGTATTTTGGTCGG
ATAGCGGTGCAAGCAACCATTTTGTGAGGAACAGCTCCAAAATGCACAAC
ATCTCGCCTGTTTCCCCCGGCAAAGAATGCATCAGAGTAGGCAATGGTGC
TCATTTGCGCGTGGAGTGTGTGGGTAGTGTCAATCTGGCATTCCATATGG
CAGGAGGCCGCTCGGGAGAAGTGGATTTTTGTGCCCAATTGACAGACGTG
TACGTAGTGCCAGGAATTTCGTTCAACTTGTTCTCCCTGCACCAAACGCA
GAAAAAGCACAGGATAATGTTGGATGAGAGGGGTGTGCACCTTTCGGCGG
TCGGCTTAGTTTCGCATATTCGGATATCGGATGGTCTCTATCGGCCACCC
GCTTGCCCCCCTCGTACCGCGACGGTGATGTAATCCCCTCTACCGTTGTC
CCTCCCCCCGTTGTCCGCTAAGCGTCTCCGCCTGGCGTTGGCACTGGCCT
ATTCGCCCAAAACCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNN

Coding sequence (CDS) from alignment at Scaffold_255:485110..486162+

>EsuBft104_13a-0001 ID=EsuBft104_13a-0001|Name=EsuBft104_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=309bp|location=Sequence derived from alignment at Scaffold_255:485110..486162+ (Ectocarpus subulatus male Bft15b)
ATGGGTCGAGTGGAAACGGCGGGGGACAGGACGGAGACGGAGGCGCCCGG
AGTCGGAGCAGGAGCAAAGGGAGATGAAACAAGAAAGCAGGAGAGAGAGG
AGCCGACAGCGACCACTGCTACCTACATCCGCACTTGTCCCACACCAACG
CCCAGTGCCACACTCAACGCGACCGTCAGAAGAAAAAGGAGCAACAGCAG
TTTCAGCCGCAGCAGCCGCAGCAGCTGCAGCAACACTTCACCCATGCCCC
TCCCCAGTCGCCTTCTCCCGGAGCAGCAGCTTTTCCGCCTGGGCATCTGC
ACTCCCTGA