EsuBft104_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft104_12a-0001
Unique Name	EsuBft104_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_255	contig	Scaffold_255:486350..487185 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft104_12
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	83
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft104_12a	EsuBft104_12a	Ectocarpus subulatus male Bft15b	gene	Scaffold_255 486350..487185 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_12a-0001-exon	EsuBft104_12a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 486350..487185 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_12a-0001-exon	agat-five_prime_utr-294	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_255 486350..486703 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_12a-0001-cds	EsuBft104_12a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_255 486704..487111 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_12a-0001-exon	agat-three_prime_utr-479	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_255 487112..487185 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_12a-0001	EsuBft104_12	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_255 486704..487111 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_255:486350..487185+
coding sequence from alignment at Scaffold_255:486350..487185+

spliced messenger RNA

>EsuBft104_12a-0001 ID=EsuBft104_12a-0001|Name=EsuBft104_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=836bp|location=Sequence derived from alignment at Scaffold_255:486350..487185+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCG
CCGTCGCCGTCAGGTGGCGGCACCGCTCTCCAACACCGCCTTGGGCTGCT
GTCGATGATGGGCAAGGATGCGCTCGTCTCGTCGCTCGCCACCCGGGAAG
CCGTCGATCAAGGACGTCGAGACCTGCCACCGTCCGCCAAAATCGCCCCT
CCCGCTCCCCCACAGCCGCAAGATACGAGTTTAGCAGGCCATGGGAGCGG
GGGGGCCGCAGGAGCTGGGGGGCCGGGGGACCTGCACATGTTCGCAGCAA
TGTTCCCTACCCACGAGGATGTGGAAGCCACTCTTCGTGCCAAGCGCCCT
CCTGACAAGACGCCGGACCTTCCTCACTGCCTCGCCAGCGACCTCCGAGT
GCCGAAAACGTTCAAGGAGGCCATGCGGTCTCAACATTCAGAGTTGTGGG
ATGATGCAGTCGGTCGTGAGTTTTTCGGTCTGCTGGATGCAGGTACTTTA
AGTCCGGTGTAGCAACCAGTAGAAATTTCATCAACCGCCAAGTGGGTATT
CAACTGTAAGGCAGACGAGTACGGATGGCCGACGAA

protein sequence of EsuBft104_12a-0001

>EsuBft104_12 ID=EsuBft104_12|Name=EsuBft104_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=135bp
MMGKDALVSSLATREAVDQGRRDLPPSAKIAPPAPPQPQDTSLAGHGSGG
AAGAGGPGDLHMFAAMFPTHEDVEATLRAKRPPDKTPDLPHCLASDLRVP
KTFKEAMRSQHSELWDDAVGREFFGLLDAGTLSPV

mRNA from alignment at Scaffold_255:486350..487185+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft104_12a-0001 ID=EsuBft104_12a-0001|Name=EsuBft104_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=836bp|location=Sequence derived from alignment at Scaffold_255:486350..487185+ (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCG
CCGTCGCCGTCAGGTGGCGGCACCGCTCTCCAACACCGCCTTGGGCTGCT
GTCGATGATGGGCAAGGATGCGCTCGTCTCGTCGCTCGCCACCCGGGAAG
CCGTCGATCAAGGACGTCGAGACCTGCCACCGTCCGCCAAAATCGCCCCT
CCCGCTCCCCCACAGCCGCAAGATACGAGTTTAGCAGGCCATGGGAGCGG
GGGGGCCGCAGGAGCTGGGGGGCCGGGGGACCTGCACATGTTCGCAGCAA
TGTTCCCTACCCACGAGGATGTGGAAGCCACTCTTCGTGCCAAGCGCCCT
CCTGACAAGACGCCGGACCTTCCTCACTGCCTCGCCAGCGACCTCCGAGT
GCCGAAAACGTTCAAGGAGGCCATGCGGTCTCAACATTCAGAGTTGTGGG
ATGATGCAGTCGGTCGTGAGTTTTTCGGTCTGCTGGATGCAGGTACTTTA
AGTCCGGTGTAGCAACCAGTAGAAATTTCATCAACCGCCAAGTGGGTATT
CAACTGTAAGGCAGACGAGTACGGATGGCCGACGAA

Coding sequence (CDS) from alignment at Scaffold_255:486350..487185+

>EsuBft104_12a-0001 ID=EsuBft104_12a-0001|Name=EsuBft104_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=408bp|location=Sequence derived from alignment at Scaffold_255:486350..487185+ (Ectocarpus subulatus male Bft15b)
ATGATGGGCAAGGATGCGCTCGTCTCGTCGCTCGCCACCCGGGAAGCCGT
CGATCAAGGACGTCGAGACCTGCCACCGTCCGCCAAAATCGCCCCTCCCG
CTCCCCCACAGCCGCAAGATACGAGTTTAGCAGGCCATGGGAGCGGGGGG
GCCGCAGGAGCTGGGGGGCCGGGGGACCTGCACATGTTCGCAGCAATGTT
CCCTACCCACGAGGATGTGGAAGCCACTCTTCGTGCCAAGCGCCCTCCTG
ACAAGACGCCGGACCTTCCTCACTGCCTCGCCAGCGACCTCCGAGTGCCG
AAAACGTTCAAGGAGGCCATGCGGTCTCAACATTCAGAGTTGTGGGATGA
TGCAGTCGGTCGTGAGTTTTTCGGTCTGCTGGATGCAGGTACTTTAAGTC
CGGTGTAG