EsuBft104_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft104_11a-0001
Unique NameEsuBft104_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_255contigScaffold_255:487187..488773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7070.TC002223-PA
ProteomeIdEsuBft104_11
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length1587
Hectar predicted targeting categoryother localisation
Evalue9.65e-74
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria,41WYJ@6656|Arthropoda,3SH01@50557|Insecta
Date last modified2016-06-14
Date creation2016-06-14
DescriptionEncoded by
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
GO0097159
GO1901363
GO0090304
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft104_11aEsuBft104_11aEctocarpus subulatus male Bft15bgeneScaffold_255 487187..488773 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_11a-0001-exonEsuBft104_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_255 487187..488773 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_11a-0001-exonagat-five_prime_utr-293Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_255 487187..487216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_11a-0001-cdsEsuBft104_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_255 487217..488533 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_11a-0001-exonagat-three_prime_utr-478Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_255 488534..488773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft104_11a-0001EsuBft104_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_255 487217..488533 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft104_11a-0001 ID=EsuBft104_11a-0001|Name=EsuBft104_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1587bp|location=Sequence derived from alignment at Scaffold_255:487187..488773+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCAAGGCACGACTTGTAGCGCGAGGGGACATGCAGAGGGCTTCGATTGA
TTTTGGAGAATTGTTTGCACCCACCGTATCCGTGTCTAGTGTGCGTTTGT
TGGCAGCATTGGCATGTGAGCAGAACCTTGACTTGTGCCATTTCGATATT
CAGCAGGCATTTGTGCAGTCTGAACTTGAAGAGGATGTTTTCATGCGTCT
CCCGCAAGGTTGTGGTAGGTTATCTGGACTGATCGTGAAACTATGCAAGA
GTCTGTACGGTTTGAAGCAGGCATCACGACAATGGCATGCGCACCTGACG
AGGTGTTTGTTACTTTTAGGATTTGTGCAATGTTTGGCGGATGCATGTGT
TTTTCGATTGATGGAGGATGGATGTGTGATCATGATCATTGTGGTCCACG
TTGATGACATTTTTGCCGTAGGGCAGAAGGAGAGGTGTGACAAGTTTGGC
AGTGACCTCAACGAGATGGTCCCCGTGAAAAACTTTGGGGAGTTGAGGTG
GTACTCCGCGTGCTTTTACCAGAGAGATCTAGAGAGAGGCCTTTTGAGGA
TCTCGCAGCAAAGGTTTGCAGAAGAGTTGGCTGCAGAGTACGGCGTTGAG
TGGGGGAAGAGTGTGCCCTTGCCTGTGAGCGTGAAGCTCACCGACTTTGA
CGAAAACGAAGCGTGTGCTGATGTCCCGTTTCGCGAGTTGGTAGGATCTC
TGATGTGGTTGGCCACTCAAACCAGGCCGGACATCGCGAATGCAGTACGA
GCAGTAGCGCGGTATTGCGCGTCTCCCAAGATGGTGCACTGGAAGGCAGC
ACTTGGTATTTTAGGGTACGTGCGTAGGACGAGTTGGATGGGGATTACAT
TTGAGAGGGGAGTGGTCACTGGCATGAGCATGCAGGTGTTTGTGGATGCC
GACTATGCAAGCAAGGCAGCAGACCGTAAGTCGGTCTCAGGAGGACTAGT
GATGTGTGGGGGTGGGTGTGTGACTTGGTTTTCGAGGACGCAGAAGTGCG
TCACGCTCTCCACAACGGAAGCAGAGTATGTGGCAATTGCCGACGTCTTG
AAGGAAGTGCTTTTCTTGAGGCAGGTTTGGCGTTTTATGTTGCCAGATGC
AGGTATGCCGTGCATCCCGGTCTTCGAGGATAATCAGGGAGCGATTCAGA
TTGCGCACAACCCGATCACGAACTCAAACTCGAAGCACATCGATGTACGG
CATCACTTTATCAGGGAACTGGTAGAGAGGAAGGAGATTTCGATTACGCA
TGTGACGTCGGAGTTTCAGCATGCAGATTTCTTGACGAAGGCTATCAGCA
AGGAATCTTTTGCGTTGCACAGAGACTTTGTGATGAATTTGCATTGAAAT
AAGTGTTTTGGGATCAAATCGTGTTTTGCCGCGGAGTGGAAAAGAGAGGA
TATGTACAGGTTTGAACAAGAGATGGAGAGAGTCAAGTGGAGATGGTAGT
GTTTTGGAGGGTTAGTGTTTGGGACTTTTCTTGGTGATTTGGAAGAGTCG
GTATGCGATTGATTATTTTCGGACGTACTATTTTGGGATTTTGAATTATC
GTTTTCTTGGTTTTGCATGTGTTTTGGGATGAACTGG
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protein sequence of EsuBft104_11a-0001

>EsuBft104_11 ID=EsuBft104_11|Name=EsuBft104_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=438bp
MQRASIDFGELFAPTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELE
EDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRQWHAHLTRCLLLLGFVQ
CLADACVFRLMEDGCVIMIIVVHVDDIFAVGQKERCDKFGSDLNEMVPVK
NFGELRWYSACFYQRDLERGLLRISQQRFAEELAAEYGVEWGKSVPLPVS
VKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPK
MVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRK
SVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVW
RFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVER
KEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLH
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mRNA from alignment at Scaffold_255:487187..488773+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft104_11a-0001 ID=EsuBft104_11a-0001|Name=EsuBft104_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1587bp|location=Sequence derived from alignment at Scaffold_255:487187..488773+ (Ectocarpus subulatus male Bft15b)
TTCAAGGCACGACTTGTAGCGCGAGGGGACATGCAGAGGGCTTCGATTGA
TTTTGGAGAATTGTTTGCACCCACCGTATCCGTGTCTAGTGTGCGTTTGT
TGGCAGCATTGGCATGTGAGCAGAACCTTGACTTGTGCCATTTCGATATT
CAGCAGGCATTTGTGCAGTCTGAACTTGAAGAGGATGTTTTCATGCGTCT
CCCGCAAGGTTGTGGTAGGTTATCTGGACTGATCGTGAAACTATGCAAGA
GTCTGTACGGTTTGAAGCAGGCATCACGACAATGGCATGCGCACCTGACG
AGGTGTTTGTTACTTTTAGGATTTGTGCAATGTTTGGCGGATGCATGTGT
TTTTCGATTGATGGAGGATGGATGTGTGATCATGATCATTGTGGTCCACG
TTGATGACATTTTTGCCGTAGGGCAGAAGGAGAGGTGTGACAAGTTTGGC
AGTGACCTCAACGAGATGGTCCCCGTGAAAAACTTTGGGGAGTTGAGGTG
GTACTCCGCGTGCTTTTACCAGAGAGATCTAGAGAGAGGCCTTTTGAGGA
TCTCGCAGCAAAGGTTTGCAGAAGAGTTGGCTGCAGAGTACGGCGTTGAG
TGGGGGAAGAGTGTGCCCTTGCCTGTGAGCGTGAAGCTCACCGACTTTGA
CGAAAACGAAGCGTGTGCTGATGTCCCGTTTCGCGAGTTGGTAGGATCTC
TGATGTGGTTGGCCACTCAAACCAGGCCGGACATCGCGAATGCAGTACGA
GCAGTAGCGCGGTATTGCGCGTCTCCCAAGATGGTGCACTGGAAGGCAGC
ACTTGGTATTTTAGGGTACGTGCGTAGGACGAGTTGGATGGGGATTACAT
TTGAGAGGGGAGTGGTCACTGGCATGAGCATGCAGGTGTTTGTGGATGCC
GACTATGCAAGCAAGGCAGCAGACCGTAAGTCGGTCTCAGGAGGACTAGT
GATGTGTGGGGGTGGGTGTGTGACTTGGTTTTCGAGGACGCAGAAGTGCG
TCACGCTCTCCACAACGGAAGCAGAGTATGTGGCAATTGCCGACGTCTTG
AAGGAAGTGCTTTTCTTGAGGCAGGTTTGGCGTTTTATGTTGCCAGATGC
AGGTATGCCGTGCATCCCGGTCTTCGAGGATAATCAGGGAGCGATTCAGA
TTGCGCACAACCCGATCACGAACTCAAACTCGAAGCACATCGATGTACGG
CATCACTTTATCAGGGAACTGGTAGAGAGGAAGGAGATTTCGATTACGCA
TGTGACGTCGGAGTTTCAGCATGCAGATTTCTTGACGAAGGCTATCAGCA
AGGAATCTTTTGCGTTGCACAGAGACTTTGTGATGAATTTGCATTGAAAT
AAGTGTTTTGGGATCAAATCGTGTTTTGCCGCGGAGTGGAAAAGAGAGGA
TATGTACAGGTTTGAACAAGAGATGGAGAGAGTCAAGTGGAGATGGTAGT
GTTTTGGAGGGTTAGTGTTTGGGACTTTTCTTGGTGATTTGGAAGAGTCG
GTATGCGATTGATTATTTTCGGACGTACTATTTTGGGATTTTGAATTATC
GTTTTCTTGGTTTTGCATGTGTTTTGGGATGAACTGG
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Coding sequence (CDS) from alignment at Scaffold_255:487187..488773+

>EsuBft104_11a-0001 ID=EsuBft104_11a-0001|Name=EsuBft104_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1317bp|location=Sequence derived from alignment at Scaffold_255:487187..488773+ (Ectocarpus subulatus male Bft15b)
ATGCAGAGGGCTTCGATTGATTTTGGAGAATTGTTTGCACCCACCGTATC
CGTGTCTAGTGTGCGTTTGTTGGCAGCATTGGCATGTGAGCAGAACCTTG
ACTTGTGCCATTTCGATATTCAGCAGGCATTTGTGCAGTCTGAACTTGAA
GAGGATGTTTTCATGCGTCTCCCGCAAGGTTGTGGTAGGTTATCTGGACT
GATCGTGAAACTATGCAAGAGTCTGTACGGTTTGAAGCAGGCATCACGAC
AATGGCATGCGCACCTGACGAGGTGTTTGTTACTTTTAGGATTTGTGCAA
TGTTTGGCGGATGCATGTGTTTTTCGATTGATGGAGGATGGATGTGTGAT
CATGATCATTGTGGTCCACGTTGATGACATTTTTGCCGTAGGGCAGAAGG
AGAGGTGTGACAAGTTTGGCAGTGACCTCAACGAGATGGTCCCCGTGAAA
AACTTTGGGGAGTTGAGGTGGTACTCCGCGTGCTTTTACCAGAGAGATCT
AGAGAGAGGCCTTTTGAGGATCTCGCAGCAAAGGTTTGCAGAAGAGTTGG
CTGCAGAGTACGGCGTTGAGTGGGGGAAGAGTGTGCCCTTGCCTGTGAGC
GTGAAGCTCACCGACTTTGACGAAAACGAAGCGTGTGCTGATGTCCCGTT
TCGCGAGTTGGTAGGATCTCTGATGTGGTTGGCCACTCAAACCAGGCCGG
ACATCGCGAATGCAGTACGAGCAGTAGCGCGGTATTGCGCGTCTCCCAAG
ATGGTGCACTGGAAGGCAGCACTTGGTATTTTAGGGTACGTGCGTAGGAC
GAGTTGGATGGGGATTACATTTGAGAGGGGAGTGGTCACTGGCATGAGCA
TGCAGGTGTTTGTGGATGCCGACTATGCAAGCAAGGCAGCAGACCGTAAG
TCGGTCTCAGGAGGACTAGTGATGTGTGGGGGTGGGTGTGTGACTTGGTT
TTCGAGGACGCAGAAGTGCGTCACGCTCTCCACAACGGAAGCAGAGTATG
TGGCAATTGCCGACGTCTTGAAGGAAGTGCTTTTCTTGAGGCAGGTTTGG
CGTTTTATGTTGCCAGATGCAGGTATGCCGTGCATCCCGGTCTTCGAGGA
TAATCAGGGAGCGATTCAGATTGCGCACAACCCGATCACGAACTCAAACT
CGAAGCACATCGATGTACGGCATCACTTTATCAGGGAACTGGTAGAGAGG
AAGGAGATTTCGATTACGCATGTGACGTCGGAGTTTCAGCATGCAGATTT
CTTGACGAAGGCTATCAGCAAGGAATCTTTTGCGTTGCACAGAGACTTTG
TGATGAATTTGCATTGA
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