EsuBft104_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft104_10a-0001
Unique Name	EsuBft104_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_255	contig	Scaffold_255:495248..496878 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft104_10
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	149
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft104_10a	EsuBft104_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_255 495248..496878 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_10a-0001-exon	EsuBft104_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 495248..496444 -
EsuBft104_10a-0001-exon	agat-exon-6690	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 496586..496878 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_10a-0001-exon	agat-three_prime_utr-477	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_255 495248..496356 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_10a-0001-cds	EsuBft104_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_255 496357..496444 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft104_10a-0001	EsuBft104_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_255 496357..496878 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_255:495248..496878-
coding sequence from alignment at Scaffold_255:495248..496878-

spliced messenger RNA

>EsuBft104_10a-0001 ID=EsuBft104_10a-0001|Name=EsuBft104_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1490bp|location=Sequence derived from alignment at Scaffold_255:495248..496878- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATCAATGATTTCACGGAGCCCCCCTTTTGGGAATGGGAACGCGC
GGAGCCAATAGCGGGGGCGGAATCGGGGGCATTCACGAATGCGGGCAAAG
CAGCAGGGTCTACAATAGTCGCAGATGGGTCGTACGGCAACCGCATGGCA
TACGCTGCAGACGCTTTTTCCTCTCTAGCAAAGAGCAGTCCCTTTTGTAG
GGTTGCACCACGTTCGTCGTACAGGATTGGTTGCTTCAGAGAAACAGCAT
GCGTTGAGAACAAGTTGAAACTCAGGCTCTCTACAACAGACACTGAGCTT
CACACACATCGTCGTTTTCTCACCATTATCATCCTCCTGAAAGAAACGAA
GATTACTGCTACCGATGGCTTGCACTTCTAGCAGTCGACCATCACCTACA
ACGATACTTCCTACTGGCGGGGATCTCTTGCAGGTCATAAATGTGGAGGC
TGCTGTTGGTGAAACTGTTGCTGGCTCCTGAGTCAGCTACCCATCTCTCG
CTACCAGGCGGCCCCTCACTAGATTCCACACTCAGCAAAGACGAAGCAGA
CGCAGCAGACTCTACTCCAATCGTCACGCCTATCCTACTGAAAAAGTCGT
CAGGGTGAGACTTGCCTATGGGCACCGATTGTGCCGGTGGAGGTAGCCCG
AAAATGGAGGCGCGCCAGGAGAAGGAATAGAGAACGAGGAGAAAGCGGTG
CTGCTGCTGCTCGCGGGGGGGGGCTCACGTGGCTGCTCGAATGACGAATC
TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTAGCCGTCTTCGTAGTAGTAGCCGTCGTCGTAGTCGCC
GTAGTCTTCGTAGTAGCCTCCATCATCGTTTCCGTAGTACACAACGTACG
CCTGTTCTCTTCCGTGGCCAGAACGCGCGTGCCCCGGGCCTCTCTCTGCC
CGTTCCCTCTCGGCACGCCCGTCGCTGCTGTGGCGTCCCGCGGGCCCACG
ACCCCCCGGGTGACGCCCCAGACGACCGCCAGGCCCACGTCCACGAAGAG
GTCTCGGGGGGGGTGAGGCTTGACTCCAGCCACCGCCACCATGACCGGTG
TGGTGCTGCTGCCCTTCTATCCTCACCCATCGCCCGCCACCGCGGCCTGG
CCCCGGCGGCGGTCTACCCCCTCGCTGGCTACCGCCGCCACCGCGGCTGC
CGCCGCCCGAGCGGCGTTCCTCGGCGCCCTCTCTCGAACGCGCGCGCCGC
AGTTGCCGCTGGAGGCGACACTGCTTGTTGGTGTGAAGCTCGGATTGGTG
GTAGCGGCAATATCCGCCGGGGTCGTCGTTGAACACGTCACTATTTTTCT
TCTCTCGGTCACGATTTTGGCCTCCAGCTGCTGCCTGACC

protein sequence of EsuBft104_10a-0001

>EsuBft104_10 ID=EsuBft104_10|Name=EsuBft104_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=126bp
MDINDFTEPPFWEWERAEPIAGAESGAFTNAGKAAGSTIVADGSYGNRMA
YAADAFSSLAKSSPFCRVAPRSSYRIGCFRETACVENKLKLRLSTTDTEL
HTHRRFLTIIILLKETKITATDGLHF

mRNA from alignment at Scaffold_255:495248..496878-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft104_10a-0001 ID=EsuBft104_10a-0001|Name=EsuBft104_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1631bp|location=Sequence derived from alignment at Scaffold_255:495248..496878- (Ectocarpus subulatus male Bft15b)
ATGGACATCAATGATTTCACGGAGCCCCCCTTTTGGGAATGGGAACGCGC
GGAGCCAATAGCGGGGGCGGAATCGGGGGCATTCACGAATGCGGGCAAAG
CAGCAGGGTCTACAATAGTCGCAGATGGGTCGTACGGCAACCGCATGGCA
TACGCTGCAGACGCTTTTTCCTCTCTAGCAAAGAGCAGTCCCTTTTGTAG
GGTTGCACCACGTTCGTCGTACAGGATTGGTTGCTTCAGAGAAACAGCAT
GCGTTGAGAACAAGTTGAAACTCAGGCTCTCTACAACAGACACGTCAGTG
AGCTTCACACACGTCGTCGTTTTCNCTATTTTGAAAGGTTGCACCACGTT
CGTCGGAGAGGATTGGTTGCTTCAAAGAAACAGCATGCGTTGAAAACAAG
TTGAAGCTCAGGCTCTCTACGACAGACACGTCAGTGAGCTTCACACACAT
CGTCGTTTTCTCACCATTATCATCCTCCTGAAAGAAACGAAGATTACTGC
TACCGATGGCTTGCACTTCTAGCAGTCGACCATCACCTACAACGATACTT
CCTACTGGCGGGGATCTCTTGCAGGTCATAAATGTGGAGGCTGCTGTTGG
TGAAACTGTTGCTGGCTCCTGAGTCAGCTACCCATCTCTCGCTACCAGGC
GGCCCCTCACTAGATTCCACACTCAGCAAAGACGAAGCAGACGCAGCAGA
CTCTACTCCAATCGTCACGCCTATCCTACTGAAAAAGTCGTCAGGGTGAG
ACTTGCCTATGGGCACCGATTGTGCCGGTGGAGGTAGCCCGAAAATGGAG
GCGCGCCAGGAGAAGGAATAGAGAACGAGGAGAAAGCGGTGCTGCTGCTG
CTCGCGGGGGGGGGCTCACGTGGCTGCTCGAATGACGAATCTTCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTAGCCGTCTTCGTAGTAGTAGCCGTCGTCGTAGTCGCCGTAGTCTTC
GTAGTAGCCTCCATCATCGTTTCCGTAGTACACAACGTACGCCTGTTCTC
TTCCGTGGCCAGAACGCGCGTGCCCCGGGCCTCTCTCTGCCCGTTCCCTC
TCGGCACGCCCGTCGCTGCTGTGGCGTCCCGCGGGCCCACGACCCCCCGG
GTGACGCCCCAGACGACCGCCAGGCCCACGTCCACGAAGAGGTCTCGGGG
GGGGTGAGGCTTGACTCCAGCCACCGCCACCATGACCGGTGTGGTGCTGC
TGCCCTTCTATCCTCACCCATCGCCCGCCACCGCGGCCTGGCCCCGGCGG
CGGTCTACCCCCTCGCTGGCTACCGCCGCCACCGCGGCTGCCGCCGCCCG
AGCGGCGTTCCTCGGCGCCCTCTCTCGAACGCGCGCGCCGCAGTTGCCGC
TGGAGGCGACACTGCTTGTTGGTGTGAAGCTCGGATTGGTGGTAGCGGCA
ATATCCGCCGGGGTCGTCGTTGAACACGTCACTATTTTTCTTCTCTCGGT
CACGATTTTGGCCTCCAGCTGCTGCCTGACC

Coding sequence (CDS) from alignment at Scaffold_255:495248..496878-

>EsuBft104_10a-0001 ID=EsuBft104_10a-0001|Name=EsuBft104_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=381bp|location=Sequence derived from alignment at Scaffold_255:495248..496878- (Ectocarpus subulatus male Bft15b)
ATGGACATCAATGATTTCACGGAGCCCCCCTTTTGGGAATGGGAACGCGC
GGAGCCAATAGCGGGGGCGGAATCGGGGGCATTCACGAATGCGGGCAAAG
CAGCAGGGTCTACAATAGTCGCAGATGGGTCGTACGGCAACCGCATGGCA
TACGCTGCAGACGCTTTTTCCTCTCTAGCAAAGAGCAGTCCCTTTTGTAG
GGTTGCACCACGTTCGTCGTACAGGATTGGTTGCTTCAGAGAAACAGCAT
GCGTTGAGAACAAGTTGAAACTCAGGCTCTCTACAACAGACACTGAGCTT
CACACACATCGTCGTTTTCTCACCATTATCATCCTCCTGAAAGAAACGAA
GATTACTGCTACCGATGGCTTGCACTTCTAG