EsuBft1049_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1049_4a-0001
Unique Name	EsuBft1049_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_133	contig	Scaffold_133:472849..474000 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1049_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	115
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1049_4a	EsuBft1049_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_133 472849..474000 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1049_4a-0001-exon	EsuBft1049_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_133 472849..474000 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1049_4a-0001-exon	agat-three_prime_utr-471	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_133 472849..473176 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1049_4a-0001-cds	EsuBft1049_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_133 473177..473989 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1049_4a-0001-exon	agat-five_prime_utr-289	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_133 473990..474000 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1049_4a-0001	EsuBft1049_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_133 473177..473989 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_133:472849..474000-
coding sequence from alignment at Scaffold_133:472849..474000-

spliced messenger RNA

>EsuBft1049_4a-0001 ID=EsuBft1049_4a-0001|Name=EsuBft1049_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1152bp|location=Sequence derived from alignment at Scaffold_133:472849..474000- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATAAACGCAGGATGGAAGGTGCGAAACACCAACGAGAGAACCCCTGGGAT
GTTCACATGGTCGAGGCGACGCCTGCCACGCTCCATGTGTGGCGCGTGAT
CGGTGACGAATCAGGGGTTGCCGCGTATGCCGCCGCGCGTGCCCCATCGG
TGCCGGCGACGACAGAAAGCGACTGGAGCGCCATGTACTTTCAACTTTCA
CCAGGTAACGCAGTGGGCACGCTGGGCTACCGCTGGGACCAAGGCTACCC
CGTGGCCCGCCTCGTCCGAATCTCCCTGCCACTTGGCGCCTGCGGTGCCG
TCGCCCTGGTGGTGGATGACACTGGGGAGAAGGTGGAAGCAGGAGCGGAA
TTTGCCAAAAGAGAAAATAAACTCCCGGGGCTAATGGTTTCATCAGACAT
TCCGGGTGCCTTCAAGGCGGCCGTTCTCAAGTCCAGGCTAGGCGTTCCGT
CAGACGAGCCGCTGCTACCGGCGTTGGGACGACGACAACCCCCGGTGGTT
CTCGTTTGCCGGGAGAGCGTCGGCGAGTGGGAGGTGGCCGTGCCACACAA
TCTCCTGGGGGTTATGGCGCGCGGAAACGCCTGGGAGGAGCGGCGTGTGG
CTGAATTCAGGCCTCATACCGGGATCACCGCCGAGGCGAGGTTGTGTAGG
CCGAAGTGCGCGAAAACGGAGGAAGGGGCCGTCCCGTGGCACAGGTGGCG
CGACGGCGAAGATGTTATGTCGTTGGGAATAGCAGTCGAGGCAGAGGGCG
AGTCGATCCGGTGGCTAAGTGGGGCCATCGCGTCGCCCGTGGCCGAGAAC
GTTGCGCGAACAGACCCCGTTTAGACCACTTTCAGTTGAAACACGTCTAA
ACGTTGTCGTCGGTGAACACGGTCGAAAATACGCCATATGGGCAGACGGG
TCTGTCGAGGAAAACTGTTACAACGTAGTCAGGCACAGTTTACCATAGGT
GCGACTGCGGCAGCTAGCCTTCCGTAGACATAATACAGAAAGAATAAATG
GTACTTAGCAGAGCACATGAGCACAGAGTTGTAGCGGAGATAATTTGGCA
GGCTACACTGTAGTCGTTTTATTGTTCCGAACCCCGAAGTTCCGGTACTC
GGGCCAATACCCCGGAGACCCTCGGAACCTGCTGCGTTTGCTGCTTGTTT
TT

protein sequence of EsuBft1049_4a-0001

>EsuBft1049_4 ID=EsuBft1049_4|Name=EsuBft1049_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=270bp
MEGAKHQRENPWDVHMVEATPATLHVWRVIGDESGVAAYAAARAPSVPAT
TESDWSAMYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLGACGAVALV
VDDTGEKVEAGAEFAKRENKLPGLMVSSDIPGAFKAAVLKSRLGVPSDEP
LLPALGRRQPPVVLVCRESVGEWEVAVPHNLLGVMARGNAWEERRVAEFR
PHTGITAEARLCRPKCAKTEEGAVPWHRWRDGEDVMSLGIAVEAEGESIR
WLSGAIASPVAENVARTDPV

mRNA from alignment at Scaffold_133:472849..474000-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1049_4a-0001 ID=EsuBft1049_4a-0001|Name=EsuBft1049_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1152bp|location=Sequence derived from alignment at Scaffold_133:472849..474000- (Ectocarpus subulatus male Bft15b)
ATAAACGCAGGATGGAAGGTGCGAAACACCAACGAGAGAACCCCTGGGAT
GTTCACATGGTCGAGGCGACGCCTGCCACGCTCCATGTGTGGCGCGTGAT
CGGTGACGAATCAGGGGTTGCCGCGTATGCCGCCGCGCGTGCCCCATCGG
TGCCGGCGACGACAGAAAGCGACTGGAGCGCCATGTACTTTCAACTTTCA
CCAGGTAACGCAGTGGGCACGCTGGGCTACCGCTGGGACCAAGGCTACCC
CGTGGCCCGCCTCGTCCGAATCTCCCTGCCACTTGGCGCCTGCGGTGCCG
TCGCCCTGGTGGTGGATGACACTGGGGAGAAGGTGGAAGCAGGAGCGGAA
TTTGCCAAAAGAGAAAATAAACTCCCGGGGCTAATGGTTTCATCAGACAT
TCCGGGTGCCTTCAAGGCGGCCGTTCTCAAGTCCAGGCTAGGCGTTCCGT
CAGACGAGCCGCTGCTACCGGCGTTGGGACGACGACAACCCCCGGTGGTT
CTCGTTTGCCGGGAGAGCGTCGGCGAGTGGGAGGTGGCCGTGCCACACAA
TCTCCTGGGGGTTATGGCGCGCGGAAACGCCTGGGAGGAGCGGCGTGTGG
CTGAATTCAGGCCTCATACCGGGATCACCGCCGAGGCGAGGTTGTGTAGG
CCGAAGTGCGCGAAAACGGAGGAAGGGGCCGTCCCGTGGCACAGGTGGCG
CGACGGCGAAGATGTTATGTCGTTGGGAATAGCAGTCGAGGCAGAGGGCG
AGTCGATCCGGTGGCTAAGTGGGGCCATCGCGTCGCCCGTGGCCGAGAAC
GTTGCGCGAACAGACCCCGTTTAGACCACTTTCAGTTGAAACACGTCTAA
ACGTTGTCGTCGGTGAACACGGTCGAAAATACGCCATATGGGCAGACGGG
TCTGTCGAGGAAAACTGTTACAACGTAGTCAGGCACAGTTTACCATAGGT
GCGACTGCGGCAGCTAGCCTTCCGTAGACATAATACAGAAAGAATAAATG
GTACTTAGCAGAGCACATGAGCACAGAGTTGTAGCGGAGATAATTTGGCA
GGCTACACTGTAGTCGTTTTATTGTTCCGAACCCCGAAGTTCCGGTACTC
GGGCCAATACCCCGGAGACCCTCGGAACCTGCTGCGTTTGCTGCTTGTTT
TT

Coding sequence (CDS) from alignment at Scaffold_133:472849..474000-

>EsuBft1049_4a-0001 ID=EsuBft1049_4a-0001|Name=EsuBft1049_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=813bp|location=Sequence derived from alignment at Scaffold_133:472849..474000- (Ectocarpus subulatus male Bft15b)
ATGGAAGGTGCGAAACACCAACGAGAGAACCCCTGGGATGTTCACATGGT
CGAGGCGACGCCTGCCACGCTCCATGTGTGGCGCGTGATCGGTGACGAAT
CAGGGGTTGCCGCGTATGCCGCCGCGCGTGCCCCATCGGTGCCGGCGACG
ACAGAAAGCGACTGGAGCGCCATGTACTTTCAACTTTCACCAGGTAACGC
AGTGGGCACGCTGGGCTACCGCTGGGACCAAGGCTACCCCGTGGCCCGCC
TCGTCCGAATCTCCCTGCCACTTGGCGCCTGCGGTGCCGTCGCCCTGGTG
GTGGATGACACTGGGGAGAAGGTGGAAGCAGGAGCGGAATTTGCCAAAAG
AGAAAATAAACTCCCGGGGCTAATGGTTTCATCAGACATTCCGGGTGCCT
TCAAGGCGGCCGTTCTCAAGTCCAGGCTAGGCGTTCCGTCAGACGAGCCG
CTGCTACCGGCGTTGGGACGACGACAACCCCCGGTGGTTCTCGTTTGCCG
GGAGAGCGTCGGCGAGTGGGAGGTGGCCGTGCCACACAATCTCCTGGGGG
TTATGGCGCGCGGAAACGCCTGGGAGGAGCGGCGTGTGGCTGAATTCAGG
CCTCATACCGGGATCACCGCCGAGGCGAGGTTGTGTAGGCCGAAGTGCGC
GAAAACGGAGGAAGGGGCCGTCCCGTGGCACAGGTGGCGCGACGGCGAAG
ATGTTATGTCGTTGGGAATAGCAGTCGAGGCAGAGGGCGAGTCGATCCGG
TGGCTAAGTGGGGCCATCGCGTCGCCCGTGGCCGAGAACGTTGCGCGAAC
AGACCCCGTTTAG