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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | EsuBft1049_2 |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 1 |
Length | 371 |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1049_2a-0001 ID=EsuBft1049_2a-0001|Name=EsuBft1049_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3716bp|location=Sequence derived from alignment at Scaffold_133:476476..481660- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGTAACGGCCGTTTTAAACGGACCGACTTTTTTGTCAAAATTTTCGACAT TTGTCTTTCAAAAACTTGGAACCTGTGTGCAGTCATTTTAAACGTGTGAC GTGGACTTGTGCAACTTGTGTAAAAAAAAATGACGCCGTCCGTGAGTTGT AGCGCTCACTTCGAGACAAGACACACGACACAACACAAACCGCGGAAAAC ACGACATCATGGACACCGACATGGATATCACGACCACCCAGCGTGGCCGG CAGACCAAAACCCCGGCGAAATTCCAGCAGACGGGCTCTCTCGGTGCCGC CGTAGGCGGTGGAGGCTTGCGCTCCAGCAAGATAGTGCTGCTGCCTGGCA TCTCGGGGAACACTCATGTTACCACGGGAGGCGCTGCCGCCACCAACACT CAGAGCGAGGGTGGAGCAGGCCGCCGGCGAGGGGTGGCAACCACTGCTCC TACCCCCCCGGGAAAAGGAAAAAACAAAGCGGCGGACGCGAAGCAACAAC TGCAAGCCATCATGGCGGACCGCCGTTTTTCGGACGACACNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NCTTTTATTTTATTTTGATCGGTCTCCTCGACGCTCTTTCTCGTTTGGTG CGGTAGCTGGTCTTTCTTTCTATCATTTTGTTTCTCTTCCGAGTGGTTTT TGTACCCTATTTTTTTCTGTTTCTTCGTGGGGTCGTGTATGCCGGGTTTT GAGACCACGGGCTCCCAATCTTTTTTTTTTTAGAGCTAATGTGAGAAACA ACAACAACAACCCGCTGCATTAATGTGAGAAACAACAACAACAACAATAC AGGTTCCATTTTTTTGACACTTTCAAAAATTTTGACAAAAAGTCGGTCCG TTTAAAAGGCTGACACGCGGCCGGTTTACATGCCTGTCATGAATAATGCA ATGTCGGCTTTGTCTTGCAACTCCCGTGCGACACGCGTCACGCGTGGGTA GCGCACGCATACGCAAAAAGTGTGCGTAACTCATACATTCACTGATTGGA TCTGTTTTCGGTTGCGGTGTGTGGCACTGTACACCAGCAAACGCCTCCCG AAGGAAAGCGGGGCTGCGTGGGGTGGCTCCACGGTGCCGATAGCCCAAAG CCGATAGCCCAAAGCCGATAGCATTAGCTTCGGAATCCGTCGTGCCCCAA CCCCGGACCCGACCAATCGCCAGCAAGGGAGCATAGTTTCCCCCGAAGCT GCTGCATGTCACACAGACACACCGACCGGTGAAGTCTAGGCACCTTCTTT CAAGATTTGTACCTGTGCATGCACATGTTGATACGCCGGTTGTATGTAAA AGCACTGCTGAGGACGCGCGGATACATCGAGAGGACGAGGGGCACACGGC CGTCGTCGACGACCTCTTTGACATGGTCGCGAATATATATGTCGGTTGAT TCGTCAACCAGCGTAATACACTCCAGATCCATGCCCGCCCGAAGGAAGTC TTGCTAAACAGCGTTGAGAGAGGAAACACGTATTCTGTAGGTCCCACTGA GCCTGGTGAATCCGTATGACTACCAAGACATGGGGCTGGTGTAGAGGACG GCCCGGGGATGCTGGAAAACAAGGTAGACTAGTGCGCGGAATACAGGCAA AAGAGTAGGCCTCGTCATCGCCGTACAGGTTTAATGATATGTCAAGCGAA GCGCATAAAACGGCGGCGGAGACTTCAGGCCAAAGTCGTGCATCACACCG TCGCTTGCAGAGGCCC back to topprotein sequence of EsuBft1049_2a-0001 >EsuBft1049_2 ID=EsuBft1049_2|Name=EsuBft1049_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=142bp
MDTDMDITTTQRGRQTKTPAKFQQTGSLGAAVGGGGLRSSKIVLLPGISG NTHVTTGGAAATNTQSEGGAGRRRGVATTAPTPPGKGKNKAADAKQQLQA IMADRRFSDDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX back to topmRNA from alignment at Scaffold_133:476476..481660- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1049_2a-0001 ID=EsuBft1049_2a-0001|Name=EsuBft1049_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5185bp|location=Sequence derived from alignment at Scaffold_133:476476..481660- (Ectocarpus subulatus male Bft15b) TGTAACGGCCGTTTTAAACGGACCGACTTTTTTGTCAAAATTTTCGACAT
TTGTCTTTCAAAAACTTGGAACCTGTGTGCAGTCATTTTAAACGTGTGAC
GTGGACTTGTGCAACTTGTGTAAAAAAAAATGACGCCGTCCGTGAGTTGT
AGCGCTCACTTCGAGACAAGACACACGACACAACACAAACCGCGGAAAAC
ACGACATCATGGACACCGACATGGATATCACGACCACCCAGCGTGGCCGG
CAGACCAAAACCCCGGCGAAATTCCAGCAGACGGGCTCTCTCGGTGCCGC
CGTAGGCGGTGGAGGCTTGCGCTCCAGCAAGATAGTGCTGCTGCCTGGCA
TCTCGGGGAACACTCATGTTACCACGGGAGGCGCTGCCGCCACCAACACT
CAGAGCGAGGGTGGAGCAGGCCGCCGGCGAGGGGTGGCAACCACTGCTCC
TACCCCCCCGGGAAAAGGAAAAAACAAAGCGGCGGACGCGAAGCAACAAC
TGCAAGCCATCATGGCGGACCGCCGTTTTTCGGACGACACNNNNNNNNNN
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NCTTTTATTTTATTTTGATCGGTCTCCTCGACGCTCTTTCTCGTTTGGTG
CGGTAGCTGGTCTTTCTTTCTATCATTTTGTTTCTCTTCCGAGTGGTTTT
TGTACCCTATTTTTTTCTGTTTCTTCGTGGGGTCGTGTATGCCGGGTTTT
GAGACCACGGGCTCCCAATCTTTTTTTTTTTAGAGCTAATGTGAGAAACA
ACAACAACAACCCGCTGCATTAATGTGAGAAACAACAACAACAACAATAC
AGGTTCCATTTTTTTGACACTTTCAAAAATTTTGACAAAAAGTCGGTCCG
TTTAAAAGGCTGACACGCGGCCGGTTTACATGCCTGTCATGAATAATGCA
ATGTCGGCTTTGTCTTGCAACTCCCGTGCGACACGCGTCACGCGTGGGTA
GCGCACGCATACGCAAAAAGTGTGCGTAACTCATACATTCACTGATTGGA
TCTGTTTTCGGTTGCGGTGTGTGGCACTGTACACCAGCAAACGCCTCCCG
AAGGAAAGCGGGGCTGCGTGGGGTGGCTCCACGGTGCCGATAGCCCAAAG
CCGATAGCCCAAAGCCGATAGCATTAGCTTCGGAATCCGTCGTGCCCCAA
CCCCGGACCCGACCAATCGCCAGCAAGGGAGCATAGTTTCCCCCGAAGCT
GCTGCATGTCACACAGACACACCGACCGGTGAAGTCTAGGTACGTTTCGC
ATCGCGTCGGTTGGTATGAAGTCGTTCCCGTTCAATCAATTGAGTCAACA
GGAGACTTCCCACGAGTCTCCGCCTGATTTACGATTCACAACTCGCGCAA
TAGCCAGTTCCGGACCTAGATGTTGCCACAGGAAGGTCTTATTATGGCTT
CTGTCTCTGCGTGAGGCGTGCGCCTATTGTCACGATCCAGCCCTATTACG
ACGGGCCAAGCAACGTCGCCATTATTGTGTGTGCTTCTCCATTCCCCCGC
GTGGTGGACAGACTCAACAGCAGCAGTCTAGACATGGCGTACAGCACACC
TTGACCACGTACATGTAGATTTTTTCGCTGTCGAAGCCATGGCAATCTAC
TGTCCTTTGCATTGCGCTTTGTTTAGACGAAGTGATGATGCATGGTTTAT
GACGCATGGAGACACCCGTCTATTTTCCCTCGGTGGTCGGTTTGTGTGTT
GGTAAAAGCCACAGCACACGACTTGGGAATTTTGACCACGGGTGCTCAGT
TTGGACTTCACTACATGAAAACTACATAGTCGCCGCTGGGAGAAAGAAGG
AACGCGTCTATGGAAAAGTAAGAGGTTCGCATGGAGCTGGTGGTGGTATA
TTCTTTAGTGCAAGGAGCACGAGGTCATCACGGCTGAGAACAGTCGAATT
TCGACGGGAGGGCGTACGCCACAATAGTACCAAAATACAGCGTCATGCTG
AGTAATGCGTGAAGAGGCGCCAAGAGGACTATCGCCTGAACGTTTCAATC
GTTTCCATGCACATGTTTTGCAGCAATGGAACCGGCCTCCCACACTATTC
GACAAATATGTACCGCTTCGATGGAAGTGCAAATTAGCTTCCATGGAAGT
TGGAGCTACTTTCATGGAAGGAAGCTGATACCACTTCCTTCCATGGAAGC
TACACGTTTTGTATTTCAATGGAAGCGCAATGCGACACTTCCATGGAAGC
GATATTTGCTTCCATGGGAACTTTCGATATGAAATGTGGATGTGCCACTC
CCATGGAAGTCCCGTGAAAATCCCATGGAGCTACTCAAAACACATTTACT
GTAGGGCAGCTTCCATGGAAGTCAGCTTCGGGTTACCCAATCGAACCTCT
GAAAACGACACGCATGTCAAGGACGTTTCCGCGACCTTTATTCCGATGCA
GGGTGGCACGCAGAATATGTACGAGGTCCGTTCTGATTTTCAATGTGTGC
GTTTGCCTGCATCAATAGGTGGTGCACACAATTACTATGCCCTCCGCGCG
CCTTTCCACTGCACACCACAACGCACCAGCCATGCTCCCACCTCTATCGA
AGTTAGAGTTAGGGGTAGGGGTAGTTTTTTGGTCGATGGCTGGGGTGTTT
GATGCAAAGGACTGGAAATTGGTCAAAGTTGCCTTATCAGCGTTTCCGCC
TCCAAAAATAAGGAGCACAACGAAGAATGAGAATCCAACCTGCGCCACAC
GTTTGCAGGCACCTTCTTTCAAGATTTGTACCTGTGCATGCACATGTTGA
TACGCCGGTTGTATGTAAAAGCACTGCTGAGGACGCGCGGATACATCGAG
AGGACGAGGGGCACACGGCCGTCGTCGACGACCTCTTTGACATGGTCGCG
AATATATATGTCGGTTGATTCGTCAACCAGCGTAATACACTCCAGATCCA
TGCCCGCCCGAAGGAAGTCTTGCTAAACAGCGTTGAGAGAGGAAACACGT
ATTCTGTAGGTCCCACTGAGCCTGGTGAATCCGTATGACTACCAAGACAT
GGGGCTGGTGTAGAGGACGGCCCGGGGATGCTGGAAAACAAGGTAGACTA
GTGCGCGGAATACAGGCAAAAGAGTAGGCCTCGTCATCGCCGTACAGGTT
TAATGATATGTCAAGCGAAGCGCATAAAACGGCGGCGGAGACTTCAGGCC
AAAGTCGTGCATCACACCGTCGCTTGCAGAGGCCC back to topCoding sequence (CDS) from alignment at Scaffold_133:476476..481660- >EsuBft1049_2a-0001 ID=EsuBft1049_2a-0001|Name=EsuBft1049_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=426bp|location=Sequence derived from alignment at Scaffold_133:476476..481660- (Ectocarpus subulatus male Bft15b) ATGGACACCGACATGGATATCACGACCACCCAGCGTGGCCGGCAGACCAA AACCCCGGCGAAATTCCAGCAGACGGGCTCTCTCGGTGCCGCCGTAGGCG GTGGAGGCTTGCGCTCCAGCAAGATAGTGCTGCTGCCTGGCATCTCGGGG AACACTCATGTTACCACGGGAGGCGCTGCCGCCACCAACACTCAGAGCGA GGGTGGAGCAGGCCGCCGGCGAGGGGTGGCAACCACTGCTCCTACCCCCC CGGGAAAAGGAAAAAACAAAGCGGCGGACGCGAAGCAACAACTGCAAGCC ATCATGGCGGACCGCCGTTTTTCGGACGACACNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNN back to top
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