EsuBft1049_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1049_2a-0001
Unique NameEsuBft1049_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_133contigScaffold_133:476476..481660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1049_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length371
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1049_2aEsuBft1049_2aEctocarpus subulatus male Bft15bgeneScaffold_133 476476..481660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1049_2a-0001EsuBft1049_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_133 481027..481452 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1049_2a-0001-exonEsuBft1049_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_133 476476..476952 -
EsuBft1049_2a-0001-exonagat-exon-99304Ectocarpus subulatus male Bft15bexonScaffold_133 478422..481660 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1049_2a-0001-exonagat-three_prime_utr-469Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_133 476476..476952 -
EsuBft1049_2a-0001-exonagat-three_prime_utr-470Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_133 478422..481026 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1049_2a-0001-cdsEsuBft1049_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_133 481027..481452 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1049_2a-0001-exonagat-five_prime_utr-288Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_133 481453..481660 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1049_2a-0001 ID=EsuBft1049_2a-0001|Name=EsuBft1049_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3716bp|location=Sequence derived from alignment at Scaffold_133:476476..481660- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTAACGGCCGTTTTAAACGGACCGACTTTTTTGTCAAAATTTTCGACAT
TTGTCTTTCAAAAACTTGGAACCTGTGTGCAGTCATTTTAAACGTGTGAC
GTGGACTTGTGCAACTTGTGTAAAAAAAAATGACGCCGTCCGTGAGTTGT
AGCGCTCACTTCGAGACAAGACACACGACACAACACAAACCGCGGAAAAC
ACGACATCATGGACACCGACATGGATATCACGACCACCCAGCGTGGCCGG
CAGACCAAAACCCCGGCGAAATTCCAGCAGACGGGCTCTCTCGGTGCCGC
CGTAGGCGGTGGAGGCTTGCGCTCCAGCAAGATAGTGCTGCTGCCTGGCA
TCTCGGGGAACACTCATGTTACCACGGGAGGCGCTGCCGCCACCAACACT
CAGAGCGAGGGTGGAGCAGGCCGCCGGCGAGGGGTGGCAACCACTGCTCC
TACCCCCCCGGGAAAAGGAAAAAACAAAGCGGCGGACGCGAAGCAACAAC
TGCAAGCCATCATGGCGGACCGCCGTTTTTCGGACGACACNNNNNNNNNN
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NCTTTTATTTTATTTTGATCGGTCTCCTCGACGCTCTTTCTCGTTTGGTG
CGGTAGCTGGTCTTTCTTTCTATCATTTTGTTTCTCTTCCGAGTGGTTTT
TGTACCCTATTTTTTTCTGTTTCTTCGTGGGGTCGTGTATGCCGGGTTTT
GAGACCACGGGCTCCCAATCTTTTTTTTTTTAGAGCTAATGTGAGAAACA
ACAACAACAACCCGCTGCATTAATGTGAGAAACAACAACAACAACAATAC
AGGTTCCATTTTTTTGACACTTTCAAAAATTTTGACAAAAAGTCGGTCCG
TTTAAAAGGCTGACACGCGGCCGGTTTACATGCCTGTCATGAATAATGCA
ATGTCGGCTTTGTCTTGCAACTCCCGTGCGACACGCGTCACGCGTGGGTA
GCGCACGCATACGCAAAAAGTGTGCGTAACTCATACATTCACTGATTGGA
TCTGTTTTCGGTTGCGGTGTGTGGCACTGTACACCAGCAAACGCCTCCCG
AAGGAAAGCGGGGCTGCGTGGGGTGGCTCCACGGTGCCGATAGCCCAAAG
CCGATAGCCCAAAGCCGATAGCATTAGCTTCGGAATCCGTCGTGCCCCAA
CCCCGGACCCGACCAATCGCCAGCAAGGGAGCATAGTTTCCCCCGAAGCT
GCTGCATGTCACACAGACACACCGACCGGTGAAGTCTAGGCACCTTCTTT
CAAGATTTGTACCTGTGCATGCACATGTTGATACGCCGGTTGTATGTAAA
AGCACTGCTGAGGACGCGCGGATACATCGAGAGGACGAGGGGCACACGGC
CGTCGTCGACGACCTCTTTGACATGGTCGCGAATATATATGTCGGTTGAT
TCGTCAACCAGCGTAATACACTCCAGATCCATGCCCGCCCGAAGGAAGTC
TTGCTAAACAGCGTTGAGAGAGGAAACACGTATTCTGTAGGTCCCACTGA
GCCTGGTGAATCCGTATGACTACCAAGACATGGGGCTGGTGTAGAGGACG
GCCCGGGGATGCTGGAAAACAAGGTAGACTAGTGCGCGGAATACAGGCAA
AAGAGTAGGCCTCGTCATCGCCGTACAGGTTTAATGATATGTCAAGCGAA
GCGCATAAAACGGCGGCGGAGACTTCAGGCCAAAGTCGTGCATCACACCG
TCGCTTGCAGAGGCCC
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protein sequence of EsuBft1049_2a-0001

>EsuBft1049_2 ID=EsuBft1049_2|Name=EsuBft1049_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=142bp
MDTDMDITTTQRGRQTKTPAKFQQTGSLGAAVGGGGLRSSKIVLLPGISG
NTHVTTGGAAATNTQSEGGAGRRRGVATTAPTPPGKGKNKAADAKQQLQA
IMADRRFSDDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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mRNA from alignment at Scaffold_133:476476..481660-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1049_2a-0001 ID=EsuBft1049_2a-0001|Name=EsuBft1049_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5185bp|location=Sequence derived from alignment at Scaffold_133:476476..481660- (Ectocarpus subulatus male Bft15b)
TGTAACGGCCGTTTTAAACGGACCGACTTTTTTGTCAAAATTTTCGACAT TTGTCTTTCAAAAACTTGGAACCTGTGTGCAGTCATTTTAAACGTGTGAC GTGGACTTGTGCAACTTGTGTAAAAAAAAATGACGCCGTCCGTGAGTTGT AGCGCTCACTTCGAGACAAGACACACGACACAACACAAACCGCGGAAAAC ACGACATCATGGACACCGACATGGATATCACGACCACCCAGCGTGGCCGG CAGACCAAAACCCCGGCGAAATTCCAGCAGACGGGCTCTCTCGGTGCCGC CGTAGGCGGTGGAGGCTTGCGCTCCAGCAAGATAGTGCTGCTGCCTGGCA TCTCGGGGAACACTCATGTTACCACGGGAGGCGCTGCCGCCACCAACACT CAGAGCGAGGGTGGAGCAGGCCGCCGGCGAGGGGTGGCAACCACTGCTCC TACCCCCCCGGGAAAAGGAAAAAACAAAGCGGCGGACGCGAAGCAACAAC TGCAAGCCATCATGGCGGACCGCCGTTTTTCGGACGACACNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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TTTAAAAGGCTGACACGCGGCCGGTTTACATGCCTGTCATGAATAATGCA ATGTCGGCTTTGTCTTGCAACTCCCGTGCGACACGCGTCACGCGTGGGTA GCGCACGCATACGCAAAAAGTGTGCGTAACTCATACATTCACTGATTGGA TCTGTTTTCGGTTGCGGTGTGTGGCACTGTACACCAGCAAACGCCTCCCG AAGGAAAGCGGGGCTGCGTGGGGTGGCTCCACGGTGCCGATAGCCCAAAG CCGATAGCCCAAAGCCGATAGCATTAGCTTCGGAATCCGTCGTGCCCCAA CCCCGGACCCGACCAATCGCCAGCAAGGGAGCATAGTTTCCCCCGAAGCT GCTGCATGTCACACAGACACACCGACCGGTGAAGTCTAGGTACGTTTCGC ATCGCGTCGGTTGGTATGAAGTCGTTCCCGTTCAATCAATTGAGTCAACA GGAGACTTCCCACGAGTCTCCGCCTGATTTACGATTCACAACTCGCGCAA TAGCCAGTTCCGGACCTAGATGTTGCCACAGGAAGGTCTTATTATGGCTT CTGTCTCTGCGTGAGGCGTGCGCCTATTGTCACGATCCAGCCCTATTACG ACGGGCCAAGCAACGTCGCCATTATTGTGTGTGCTTCTCCATTCCCCCGC GTGGTGGACAGACTCAACAGCAGCAGTCTAGACATGGCGTACAGCACACC TTGACCACGTACATGTAGATTTTTTCGCTGTCGAAGCCATGGCAATCTAC TGTCCTTTGCATTGCGCTTTGTTTAGACGAAGTGATGATGCATGGTTTAT GACGCATGGAGACACCCGTCTATTTTCCCTCGGTGGTCGGTTTGTGTGTT GGTAAAAGCCACAGCACACGACTTGGGAATTTTGACCACGGGTGCTCAGT TTGGACTTCACTACATGAAAACTACATAGTCGCCGCTGGGAGAAAGAAGG AACGCGTCTATGGAAAAGTAAGAGGTTCGCATGGAGCTGGTGGTGGTATA TTCTTTAGTGCAAGGAGCACGAGGTCATCACGGCTGAGAACAGTCGAATT TCGACGGGAGGGCGTACGCCACAATAGTACCAAAATACAGCGTCATGCTG AGTAATGCGTGAAGAGGCGCCAAGAGGACTATCGCCTGAACGTTTCAATC GTTTCCATGCACATGTTTTGCAGCAATGGAACCGGCCTCCCACACTATTC GACAAATATGTACCGCTTCGATGGAAGTGCAAATTAGCTTCCATGGAAGT TGGAGCTACTTTCATGGAAGGAAGCTGATACCACTTCCTTCCATGGAAGC TACACGTTTTGTATTTCAATGGAAGCGCAATGCGACACTTCCATGGAAGC GATATTTGCTTCCATGGGAACTTTCGATATGAAATGTGGATGTGCCACTC CCATGGAAGTCCCGTGAAAATCCCATGGAGCTACTCAAAACACATTTACT GTAGGGCAGCTTCCATGGAAGTCAGCTTCGGGTTACCCAATCGAACCTCT GAAAACGACACGCATGTCAAGGACGTTTCCGCGACCTTTATTCCGATGCA GGGTGGCACGCAGAATATGTACGAGGTCCGTTCTGATTTTCAATGTGTGC GTTTGCCTGCATCAATAGGTGGTGCACACAATTACTATGCCCTCCGCGCG CCTTTCCACTGCACACCACAACGCACCAGCCATGCTCCCACCTCTATCGA AGTTAGAGTTAGGGGTAGGGGTAGTTTTTTGGTCGATGGCTGGGGTGTTT GATGCAAAGGACTGGAAATTGGTCAAAGTTGCCTTATCAGCGTTTCCGCC TCCAAAAATAAGGAGCACAACGAAGAATGAGAATCCAACCTGCGCCACAC GTTTGCAGGCACCTTCTTTCAAGATTTGTACCTGTGCATGCACATGTTGA TACGCCGGTTGTATGTAAAAGCACTGCTGAGGACGCGCGGATACATCGAG AGGACGAGGGGCACACGGCCGTCGTCGACGACCTCTTTGACATGGTCGCG AATATATATGTCGGTTGATTCGTCAACCAGCGTAATACACTCCAGATCCA TGCCCGCCCGAAGGAAGTCTTGCTAAACAGCGTTGAGAGAGGAAACACGT ATTCTGTAGGTCCCACTGAGCCTGGTGAATCCGTATGACTACCAAGACAT GGGGCTGGTGTAGAGGACGGCCCGGGGATGCTGGAAAACAAGGTAGACTA GTGCGCGGAATACAGGCAAAAGAGTAGGCCTCGTCATCGCCGTACAGGTT TAATGATATGTCAAGCGAAGCGCATAAAACGGCGGCGGAGACTTCAGGCC AAAGTCGTGCATCACACCGTCGCTTGCAGAGGCCC
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Coding sequence (CDS) from alignment at Scaffold_133:476476..481660-

>EsuBft1049_2a-0001 ID=EsuBft1049_2a-0001|Name=EsuBft1049_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=426bp|location=Sequence derived from alignment at Scaffold_133:476476..481660- (Ectocarpus subulatus male Bft15b)
ATGGACACCGACATGGATATCACGACCACCCAGCGTGGCCGGCAGACCAA
AACCCCGGCGAAATTCCAGCAGACGGGCTCTCTCGGTGCCGCCGTAGGCG
GTGGAGGCTTGCGCTCCAGCAAGATAGTGCTGCTGCCTGGCATCTCGGGG
AACACTCATGTTACCACGGGAGGCGCTGCCGCCACCAACACTCAGAGCGA
GGGTGGAGCAGGCCGCCGGCGAGGGGTGGCAACCACTGCTCCTACCCCCC
CGGGAAAAGGAAAAAACAAAGCGGCGGACGCGAAGCAACAACTGCAAGCC
ATCATGGCGGACCGCCGTTTTTCGGACGACACNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNN
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