EsuBft1048_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1048_8a-0001
Unique NameEsuBft1048_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_437contigScaffold_437:55930..56759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1048_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length50
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1048_8aEsuBft1048_8aEctocarpus subulatus male Bft15bgeneScaffold_437 55930..56759 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1048_8a-0001EsuBft1048_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_437 56362..56759 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1048_8a-0001-exonEsuBft1048_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_437 55930..56085 -
EsuBft1048_8a-0001-exonagat-exon-33475Ectocarpus subulatus male Bft15bexonScaffold_437 56139..56454 -
EsuBft1048_8a-0001-exonagat-exon-33474Ectocarpus subulatus male Bft15bexonScaffold_437 56727..56759 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1048_8a-0001-exonagat-three_prime_utr-467Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_437 55930..56085 -
EsuBft1048_8a-0001-exonagat-three_prime_utr-468Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_437 56139..56361 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1048_8a-0001-cdsEsuBft1048_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_437 56362..56454 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1048_8a-0001 ID=EsuBft1048_8a-0001|Name=EsuBft1048_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=505bp|location=Sequence derived from alignment at Scaffold_437:55930..56759- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGGTTTCCGGGGGCCCTTTTCTCGAACGGGGGTGGCAGTGTCGGG
GGTCTGGGGGAACATGGGCTTGAATGGGGGTTGCGTCAGAAAGAGCAAGA
CGGCGGATGTTTCTCTCTTGGTGTGACCGGTGGCAATATCGATCAGCAAT
GCCGCACAGACTTTTGCGCGCCGAAATATGCGTGCGACAGCTTTAACCTA
ACCACTTCGGTGGAAAGCGGATTTCTGTTCAATACGGTGTCAGGGGTACC
AGGGAAGACGGGACCGAGTTTTGTTTGATTTCGGGTGGATGAGGTTGGGG
TTTTGTTCGTTTTTCTCCATCTAAGGTTCGTGCCTAGAGTTCAGCTGTAT
GTTTCGACAAAAGTTTTGTTGACTTAGAGGCAAACATTCCTAGCTATTGG
GCATCGAGTTAATTTGGCTTGGCATGATGGCCTTTACGATCGACTTTTTA
TTTATGTCTGCATTTATCTGCAATTGTCGGAGGGCAAACAAAATAATAAT
AATTG
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protein sequence of EsuBft1048_8a-0001

>EsuBft1048_8 ID=EsuBft1048_8|Name=EsuBft1048_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=41bp
MIGFRGPFSRTGVAVSGVWGNMGLNGGCVRKSKTADVSLLV
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mRNA from alignment at Scaffold_437:55930..56759-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1048_8a-0001 ID=EsuBft1048_8a-0001|Name=EsuBft1048_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=830bp|location=Sequence derived from alignment at Scaffold_437:55930..56759- (Ectocarpus subulatus male Bft15b)
ATGATCGGTTTCCGGGGGCCCTTTTCTCGAACGGTCGGTGCGATACCTTT
TCTTTTCTTTCTATTATTTTGTTCTCTTTTTCCGGGTGGTTTGTACCCTA
TTTTTGTTTTGTTTCCTCGCCGTGTCGTATTTGCCGGGTTTTGAGACCAC
GGGCTCCCTATTTTTTGTGGACTACAGAGTCCCTGTCTCTGTGCGAGTTT
GTTTATGTCCTCGTCTGTCTTTGTTGTTTTTTTTCATTTTTTCATTTTTT
GCCTTCCGACAATTGCAGGCCCTTGTGGTTGAAGGTGGCAAGGAAGTAGG
AACAGGGGGTGGCAGTGTCGGGGGTCTGGGGGAACATGGGCTTGAATGGG
GGTTGCGTCAGAAAGAGCAAGACGGCGGATGTTTCTCTCTTGGTGTGACC
GGTGGCAATATCGATCAGCAATGCCGCACAGACTTTTGCGCGCCGAAATA
TGCGTGCGACAGCTTTAACCTAACCACTTCGGTGGAAAGCGGATTTCTGT
TCAATACGGTGTCAGGGGTACCAGGGAAGACGGGACCGAGTTTTGTTTGA
TTTCGGGTGGATGAGGTTGGGGTTTTGTTCGTTTTTCTCCATCTAAGGTT
CGTGCCTAGAGTTCAGCTGTAGTGTTTCGACAAAAGTCCATCTAAGGTTC
GTCCCTAGAGTTCAGCTGTAGTAGTGTTTCGACAAAAGTTTTGTTGACTT
AGAGGCAAACATTCCTAGCTATTGGGCATCGAGTTAATTTGGCTTGGCAT
GATGGCCTTTACGATCGACTTTTTATTTATGTCTGCATTTATCTGCAATT
GTCGGAGGGCAAACAAAATAATAATAATTG
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Coding sequence (CDS) from alignment at Scaffold_437:55930..56759-

>EsuBft1048_8a-0001 ID=EsuBft1048_8a-0001|Name=EsuBft1048_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=126bp|location=Sequence derived from alignment at Scaffold_437:55930..56759- (Ectocarpus subulatus male Bft15b)
ATGATCGGTTTCCGGGGGCCCTTTTCTCGAACGGGGGTGGCAGTGTCGGG
GGTCTGGGGGAACATGGGCTTGAATGGGGGTTGCGTCAGAAAGAGCAAGA
CGGCGGATGTTTCTCTCTTGGTGTGA
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