EsuBft1048_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1048_2a-0001
Unique Name	EsuBft1048_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_437	contig	Scaffold_437:117547..121674 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FZS5
ProteomeId	EsuBft1048_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	412
Evalue	1.08e-06
EggNOG OGs	2D16T@1\|root,2SGXK@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1048_2a	EsuBft1048_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_437 117547..121674 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1048_2a-0001-exon	EsuBft1048_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_437 117547..121674 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1048_2a-0001-cds	EsuBft1048_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_437 117547..117771 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1048_2a-0001-exon	agat-three_prime_utr-460	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_437 117772..121674 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1048_2a-0001	EsuBft1048_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_437 117547..117771 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_437:117547..121674+
coding sequence from alignment at Scaffold_437:117547..121674+

spliced messenger RNA

>EsuBft1048_2a-0001 ID=EsuBft1048_2a-0001|Name=EsuBft1048_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4128bp|location=Sequence derived from alignment at Scaffold_437:117547..121674+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGATGAAGTGCAACTGCCATGCATACCCAGAGGAAAAAGAAACGTC
TTTGCTGCCGAAAGGAGGAGAGCAGCTGCTCATGGAGATGGGGCTGTGGG
AAGGCGAGCCAACCCTACGCGTTCACGAGTGCAGCGCGTGCAGGGCGGAA
AAGGCGGCAACAAGGCAAGCCATTACCGCCTTCAACCGCGGTGGAGATGG
GCGGCAGCAGGTGGTGGANAGGTAAAGTCGTACAGACGTGTTGTATCCGT
GTTGTCGTGTTGTATTTGTGTCTGAATCGTTTCCTGTGTTAGGAATTCTG
CGAAATGTGTGATGTTGGGATGAAAGAGAGAGTACGGTTGTCCCGAACGA
GATAACTGAACGTGTGAGGGGTTATCAAGCCACCAACAGCACGTATGAGG
GGATGTTATGCTTCCAAGAGTTTAGTTGCCAATCGTGCAACGAAAAGAGT
ATGAGGGGCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AAGTGACGTTCTGTGGAAACCCAAAACGCTTTTTCATGGGCGGGGACGCA
TTTTGTGACACCCCCCCGAGCGCGCACAAAGACGAGCACCCCTCAACCTA
CCGGATGAGCACTGACATGGAATCGCTTGCTAGCATCGATACTACATCAA
GGAATCATTCGGCCGAAGGTTCAGCGCAATATCGTCCACGGTGAGCACAG
GAATCGTGTTTCCCCGGTCTTCAAAAATCGCTTTTCCGCGCCCAAAATCC
AAGTACCCTCCCTAGCACGGCCGTGCGCTCCTTCCACACCAGTGACAGGT
GTATGCCAGCCCAGCCAGGCCATCTCTGTAGGTCCCAGGGTGCATCCGGC
ATCAGTCCGTTTTGGAAATGGTCATGTGTACGCGAAGATATGACCATAAT
TCAGACCGCGGCATGAATATTGAAAAAAGTTTGTGCGGGCGAGGCAAAAA
CCTAGCAAAAAACGCTCTACTCCCTGCGGTTGGTTCGCCGTAACAAAGCA
AAGCAACGACACGATTCTGTCGTAGCAAAAAGTCGCGTATTCTGTAGTAG
CCTACCTGTTGTATGGAACACTTGAGTTTGACAGCACCAGGTTTCTCCCC
AACACCTGCCCCTGCCCCAGCACGCAGCTAGGGCACAGCCAAGGTCTCGT
TCTTGTTCGCTCATCACGGACCTCGGTTCTCGGTCATAAAACTACTCCTG
CTGTACTTGTATGATATGGCGTCGTTAACATCTTGTTTCAGCAACATGGA
CTGACGGAATATGTTATCGGACGTAAAATGGGATGGGTGCAACACGCTAG
AGGTCGCAACAGCCCGTACGTGGGTGTATTATCGACGTCATCTACCATCG
CAGGAGCGTAGCTCGCCACACTTACATGCTCTTGGCTCCGGATGCTACCG
TACACTACACAATATAACTCCCCCCCCC

protein sequence of EsuBft1048_2a-0001

>EsuBft1048_2 ID=EsuBft1048_2|Name=EsuBft1048_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=74bp
MMMKCNCHAYPEEKETSLLPKGGEQLLMEMGLWEGEPTLRVHECSACRAE
KAATRQAITAFNRGGDGRQQVVXR

mRNA from alignment at Scaffold_437:117547..121674+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1048_2a-0001 ID=EsuBft1048_2a-0001|Name=EsuBft1048_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4128bp|location=Sequence derived from alignment at Scaffold_437:117547..121674+ (Ectocarpus subulatus male Bft15b)
ATGATGATGAAGTGCAACTGCCATGCATACCCAGAGGAAAAAGAAACGTC
TTTGCTGCCGAAAGGAGGAGAGCAGCTGCTCATGGAGATGGGGCTGTGGG
AAGGCGAGCCAACCCTACGCGTTCACGAGTGCAGCGCGTGCAGGGCGGAA
AAGGCGGCAACAAGGCAAGCCATTACCGCCTTCAACCGCGGTGGAGATGG
GCGGCAGCAGGTGGTGGANAGGTAAAGTCGTACAGACGTGTTGTATCCGT
GTTGTCGTGTTGTATTTGTGTCTGAATCGTTTCCTGTGTTAGGAATTCTG
CGAAATGTGTGATGTTGGGATGAAAGAGAGAGTACGGTTGTCCCGAACGA
GATAACTGAACGTGTGAGGGGTTATCAAGCCACCAACAGCACGTATGAGG
GGATGTTATGCTTCCAAGAGTTTAGTTGCCAATCGTGCAACGAAAAGAGT
ATGAGGGGCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AAGTGACGTTCTGTGGAAACCCAAAACGCTTTTTCATGGGCGGGGACGCA
TTTTGTGACACCCCCCCGAGCGCGCACAAAGACGAGCACCCCTCAACCTA
CCGGATGAGCACTGACATGGAATCGCTTGCTAGCATCGATACTACATCAA
GGAATCATTCGGCCGAAGGTTCAGCGCAATATCGTCCACGGTGAGCACAG
GAATCGTGTTTCCCCGGTCTTCAAAAATCGCTTTTCCGCGCCCAAAATCC
AAGTACCCTCCCTAGCACGGCCGTGCGCTCCTTCCACACCAGTGACAGGT
GTATGCCAGCCCAGCCAGGCCATCTCTGTAGGTCCCAGGGTGCATCCGGC
ATCAGTCCGTTTTGGAAATGGTCATGTGTACGCGAAGATATGACCATAAT
TCAGACCGCGGCATGAATATTGAAAAAAGTTTGTGCGGGCGAGGCAAAAA
CCTAGCAAAAAACGCTCTACTCCCTGCGGTTGGTTCGCCGTAACAAAGCA
AAGCAACGACACGATTCTGTCGTAGCAAAAAGTCGCGTATTCTGTAGTAG
CCTACCTGTTGTATGGAACACTTGAGTTTGACAGCACCAGGTTTCTCCCC
AACACCTGCCCCTGCCCCAGCACGCAGCTAGGGCACAGCCAAGGTCTCGT
TCTTGTTCGCTCATCACGGACCTCGGTTCTCGGTCATAAAACTACTCCTG
CTGTACTTGTATGATATGGCGTCGTTAACATCTTGTTTCAGCAACATGGA
CTGACGGAATATGTTATCGGACGTAAAATGGGATGGGTGCAACACGCTAG
AGGTCGCAACAGCCCGTACGTGGGTGTATTATCGACGTCATCTACCATCG
CAGGAGCGTAGCTCGCCACACTTACATGCTCTTGGCTCCGGATGCTACCG
TACACTACACAATATAACTCCCCCCCCC

Coding sequence (CDS) from alignment at Scaffold_437:117547..121674+

>EsuBft1048_2a-0001 ID=EsuBft1048_2a-0001|Name=EsuBft1048_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=225bp|location=Sequence derived from alignment at Scaffold_437:117547..121674+ (Ectocarpus subulatus male Bft15b)
ATGATGATGAAGTGCAACTGCCATGCATACCCAGAGGAAAAAGAAACGTC
TTTGCTGCCGAAAGGAGGAGAGCAGCTGCTCATGGAGATGGGGCTGTGGG
AAGGCGAGCCAACCCTACGCGTTCACGAGTGCAGCGCGTGCAGGGCGGAA
AAGGCGGCAACAAGGCAAGCCATTACCGCCTTCAACCGCGGTGGAGATGG
GCGGCAGCAGGTGGTGGANAGGTAA