EsuBft1047_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1047_8a-0001
Unique NameEsuBft1047_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_512contigScaffold_512:513640..516716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LGK7
ProteomeIdEsuBft1047_8
Protein domainsPTHR31134
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Notetransmembrane protein 128 os:mus musculus gn:tmem128 pe:2 sv:2 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1288
Hectar predicted targeting categoryother localisation
Evalue3.51e-143
EggNOG OGs2BN0F@1|root,2S1N7@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_001670.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1047_8aEsuBft1047_8aEctocarpus subulatus male Bft15bgeneScaffold_512 513640..516716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1047_8a-0001EsuBft1047_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_512 514082..516590 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1047_8a-0001-exonagat-exon-58447Ectocarpus subulatus male Bft15bexonScaffold_512 513640..514190 -
EsuBft1047_8a-0001-exonEsuBft1047_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_512 514681..514845 -
EsuBft1047_8a-0001-exonagat-exon-58449Ectocarpus subulatus male Bft15bexonScaffold_512 515105..515263 -
EsuBft1047_8a-0001-exonagat-exon-58448Ectocarpus subulatus male Bft15bexonScaffold_512 515596..515707 -
EsuBft1047_8a-0001-exonagat-exon-58446Ectocarpus subulatus male Bft15bexonScaffold_512 516416..516716 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1047_8a-0001-exonagat-three_prime_utr-458Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_512 513640..514081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1047_8a-0001-cdsEsuBft1047_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_512 514082..514190 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1047_8a-0001-exonagat-five_prime_utr-282Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_512 516591..516716 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1047_8a-0001 ID=EsuBft1047_8a-0001|Name=EsuBft1047_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1288bp|location=Sequence derived from alignment at Scaffold_512:513640..516716- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTAGGCCAGTAGGCCAAACGTGCACCTGCTACTCGTCTGGCTTCATATC
TCTCTCTCCCACCCTTACCTTCGGCTGCAGAGCTTGGCTTCGTGTGCACT
GAAGTCGTCGTTTTGAGTCGCAGTAGATGCCCTCGGTGGCCCAAGAGTCC
AAGGGAAGAGCCAAGTTGTTCAAGACCTTGAACCAGTCCCGAGCCCACTT
CATCCCGCTTGGATCTTCCTCATCGGCAGCCGGGAGCGACGAGGAGAGCT
TCTGCCACGACGAAGAGAAAGCTACGAAAAACGACAACAGCACTGCGCGA
GGCGGTGAAGGAATCACCAACGCGAACCGCGATACGCCTGGGTCTTGGAG
AGCCGAGAGCAGCAGGGACATGAGCGTGCGCTACAGCAGGGTCACGTCTG
GTGATGGTGGCAGCCCCGCCACCGAGGCCGAGCAATCCAAGCGACGGCGG
TCTCAGCTGGCTGATAGGATCTCGAACAAGCTGCACGCCCTGTTCTGGGT
GGGGGTGGGGGTGGCAGTGGTGTACCGCACGGACTTCATCCGAGTGCTGG
TGGAAGATGAGCGGGTCGATCGGTTATGGTTCAATATCGGGTTGGTGTGC
TTCAGTGTTAATGCGGTAATTTTGGCGTACTTGACGGTGTGGCTACCGCA
CGTGAGAGGCATCCGGGTGTCGTGGAACGTGTACAGCCCAAGAGCCATCC
CTACGGCGACTGTTGTCGGGCTAATCTGCGCCTTGGCGCTGAATATGTCA
CTGTGGAATGTGTGGGGATTCCTGACGCCCCTCATCCTCTTCGCGGTCTT
CATCGGATGCTTGTTTAGCCTGCACTTCGTGCCTTGGCCTTGTTAAGACA
CAAGACAAGTGCGGCTGGCCCGGGGGTCGGGATCATGTACAGTTGTTTCC
GCGCTTAGCCACAGGGATACAGGTGCCGGAGGGAGGGAGCAAAAGCTGGG
GCGGGGTTACGCCCCAACAGGCTTGAGGCACATGTATAGTTCTCAGGAGC
GCCCCTCAAATGTGATTTATGAGACGTTGTATACATGTAGTTTGTTTTTT
TTTGTCCGGCAACCCGAAACAAAAGCCACTCTGTCCAACCACAACATACC
GGTAACAAATTGTCAGAGCACACCACGTTGCCCTGAATGGCTGGCACACA
CCATTTAATTTGTACTTTGCTTTCTTTCGAACCCAATGCAAACCCACACC
AATGATCGTGTCGCAGCCCTGCCACTGGAAGAGTCGCGTGTCAGATCGCC
ACGCCACACTTTGTAGTGAGTGAATGAAAGACATCATA
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protein sequence of EsuBft1047_8a-0001

>EsuBft1047_8 ID=EsuBft1047_8|Name=EsuBft1047_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=239bp
MPSVAQESKGRAKLFKTLNQSRAHFIPLGSSSSAAGSDEESFCHDEEKAT
KNDNSTARGGEGITNANRDTPGSWRAESSRDMSVRYSRVTSGDGGSPATE
AEQSKRRRSQLADRISNKLHALFWVGVGVAVVYRTDFIRVLVEDERVDRL
WFNIGLVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLI
CALALNMSLWNVWGFLTPLILFAVFIGCLFSLHFVPWPC
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mRNA from alignment at Scaffold_512:513640..516716-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1047_8a-0001 ID=EsuBft1047_8a-0001|Name=EsuBft1047_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3077bp|location=Sequence derived from alignment at Scaffold_512:513640..516716- (Ectocarpus subulatus male Bft15b)
TGTAGGCCAGTAGGCCAAACGTGCACCTGCTACTCGTCTGGCTTCATATC
TCTCTCTCCCACCCTTACCTTCGGCTGCAGAGCTTGGCTTCGTGTGCACT
GAAGTCGTCGTTTTGAGTCGCAGTAGATGCCCTCGGTGGCCCAAGAGTCC
AAGGGAAGAGCCAAGTTGTTCAAGACCTTGAACCAGTCCCGAGCCCACTT
CATCCCGCTTGGATCTTCCTCATCGGCAGCCGGGAGCGACGAGGAGAGCT
TCTGCCACGACGAAGAGAAAGCTACGAAAAACGACAACAGCACTGCGCGA
GGTATGCTCGATGGGGCGGTGCAAGCCGAGCATCAGTGGATGCTTACTGA
TTATATATACCTGTGGGTACATCCGTTTTGAGATCGGGTAAGTGCTGGCT
TTACGTTGTTCGACACTTCAGCATCGGCCGCACCTTGGTCTCGAGCGTGT
CGCATCTTGTCTCCTGTCGTTCGTGCGGGGTTCACTCTTCGTGTTCTTAT
AAAACTGGACATATCTGGGAGGCTGTATGCTGCGGATATCTCGGACAGAA
CGTTGAGTGTCTGGACGTGTTTTCGGCAATCTACATGTATCTCACACGCA
ACCGCCGGCAAAGCGGAAGTTGTTTAGACGAGACACCAAGCTAGTGTTTG
GTAGACCCCTGGCGTTCCACCCACGGTTCGCGCTTGCGATGATGCAGCAG
GCCACCGTGGGTGAGATTCAGCCTCCTCCCTTCGCACCCCACGGCGCTCC
TAAGCTCCTTCCTCGACGCTAATGGGTAGCATGTCCCTTCGCTTAACAAC
AACGTCTTCACGACAACCGTATGCTCTCTTTCACCTCCTCGACGACCTTC
CTCTCGGCCTTACCCGGACATCGCACATGACTTTAATTGCACAACCAGAC
GGCTGTGATCACAGATGAATATCTATAACAACCACAGGGACGAAAGCGAC
GAAGGTTGCATCCGGCAACGTCCGATGTTCGATCTTGTGTGAACCGTTAA
TCCGCGCAGGCGGTGAAGGAATCACCAACGCGAACCGCGATACGCCTGGG
TCTTGGAGAGCCGAGAGCAGCAGGGACATGAGCGTGCGCTACAGCAGGGT
CACGTCTGGTGATGGTGGCAGGTAAGTTTGATTCAAGCGCTGTTGTTCCA
GTCGTGTGTGGCAAGGACAGGGACACTCGCTGGACGACGAACCAGACATT
GGGAGAAGTTGGGATGGTATGCACTCCCTACAACTGTAGTACGTACCCTG
CCCTGCTTGAGGTGCATTAGACCAGCATAGAGGAATAGAGCACAAGCAGT
TGCCACCACCTACTCCTGTTCTTGACGTTTGGCCGCCGTTACGCCCCTCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCGG
CAGCCCCGCCACCGAGGCCGAGCAATCCAAGCGACGGCGGTCTCAGCTGG
CTGATAGGATCTCGAACAAGCTGCACGCCCTGTTCTGGGTGGGGGTGGGG
GTGGCAGTGGTGTACCGCACGGACTTCATCCGAGTGCTGGTGGAAGATGA
GCGGGTCGATCGGTGAGAAACGTGCCAAGAAAACTGCTGCTATTTTGAGC
CGGTGCTGTGTACCAAAGAAAATTCTTTCGCGTGCACGCGATCTGTGCAT
GTTGTCGCGACGTACATATACGACCTGGTATCTCTGTCCCGTTGGGCTTC
ATTTCGCAGCAAATGTGGTTCTAATCTTGGGAATTGCACGCTGCTATGCA
TAAGATGGATGACATCGACCTCCCCCCCATCAATCTCTCCGGCGCCCGCT
GTGTGATTGATTGTCCCGCAGGTTATGGTTCAATATCGGGTTGGTGTGCT
TCAGTGTTAATGCGGTAATTTTGGCGTACTTGACGGTGTGGCTACCGCAC
GTGAGAGGCATCCGGGTGTCGTGGAACGTGTACAGCCCAAGAGCCATCCC
TACGGCGACTGTTGTCGGGCTAATCTGCGCCTTGGCGTGAGTGTCTTCGC
CACATACATACGACCCCATTGCGTCAAATTTGAGCCTTTCCCTTGTTACC
TGAAGAAGGCTCAAGCACGATCGCGAGATGAACCTAGAACCATTGCTAGT
GTCATCTTCTTTGCAAATTTCTTACCGTAAGACGAAGCTGTGTATCTCCT
CGCGCATTCATTGTTGTGTATTCGGTGTCCGTTCGATATAACAACGGAGG
GAGTCGGATAAAGAAGGCACCACGACAGCGTTTGTGTTCGTGTTCTTGGT
GCCAGCGATCGTGACTGCACCCTCTCATCCCATCGACTTCATTGCGCACA
TCTAGCCCGAAATAATCCTCTTGATTTTGCTTCATGCCTAACTGTTCGAC
GTGCCTGTAAGGCGCACCTGCGAGTTGTTACCTCGCCCTCGTCCAATGGC
AGTATTCCCCATCGACACAAGGTCGGTACAAAGCTCTGTTCGCCCGTTTG
TACTCCTGCCTGCTTCCTTCGCTCAGGCTGAATATGTCACTGTGGAATGT
GTGGGGATTCCTGACGCCCCTCATCCTCTTCGCGGTCTTCATCGGATGCT
TGTTTAGCCTGCACTTCGTGCCTTGGCCTTGTTAAGACACAAGACAAGTG
CGGCTGGCCCGGGGGTCGGGATCATGTACAGTTGTTTCCGCGCTTAGCCA
CAGGGATACAGGTGCCGGAGGGAGGGAGCAAAAGCTGGGGCGGGGTTACG
CCCCAACAGGCTTGAGGCACATGTATAGTTCTCAGGAGCGCCCCTCAAAT
GTGATTTATGAGACGTTGTATACATGTAGTTTGTTTTTTTTTGTCCGGCA
ACCCGAAACAAAAGCCACTCTGTCCAACCACAACATACCGGTAACAAATT
GTCAGAGCACACCACGTTGCCCTGAATGGCTGGCACACACCATTTAATTT
GTACTTTGCTTTCTTTCGAACCCAATGCAAACCCACACCAATGATCGTGT
CGCAGCCCTGCCACTGGAAGAGTCGCGTGTCAGATCGCCACGCCACACTT
TGTAGTGAGTGAATGAAAGACATCATA
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Coding sequence (CDS) from alignment at Scaffold_512:513640..516716-

>EsuBft1047_8a-0001 ID=EsuBft1047_8a-0001|Name=EsuBft1047_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=720bp|location=Sequence derived from alignment at Scaffold_512:513640..516716- (Ectocarpus subulatus male Bft15b)
ATGCCCTCGGTGGCCCAAGAGTCCAAGGGAAGAGCCAAGTTGTTCAAGAC
CTTGAACCAGTCCCGAGCCCACTTCATCCCGCTTGGATCTTCCTCATCGG
CAGCCGGGAGCGACGAGGAGAGCTTCTGCCACGACGAAGAGAAAGCTACG
AAAAACGACAACAGCACTGCGCGAGGCGGTGAAGGAATCACCAACGCGAA
CCGCGATACGCCTGGGTCTTGGAGAGCCGAGAGCAGCAGGGACATGAGCG
TGCGCTACAGCAGGGTCACGTCTGGTGATGGTGGCAGCCCCGCCACCGAG
GCCGAGCAATCCAAGCGACGGCGGTCTCAGCTGGCTGATAGGATCTCGAA
CAAGCTGCACGCCCTGTTCTGGGTGGGGGTGGGGGTGGCAGTGGTGTACC
GCACGGACTTCATCCGAGTGCTGGTGGAAGATGAGCGGGTCGATCGGTTA
TGGTTCAATATCGGGTTGGTGTGCTTCAGTGTTAATGCGGTAATTTTGGC
GTACTTGACGGTGTGGCTACCGCACGTGAGAGGCATCCGGGTGTCGTGGA
ACGTGTACAGCCCAAGAGCCATCCCTACGGCGACTGTTGTCGGGCTAATC
TGCGCCTTGGCGCTGAATATGTCACTGTGGAATGTGTGGGGATTCCTGAC
GCCCCTCATCCTCTTCGCGGTCTTCATCGGATGCTTGTTTAGCCTGCACT
TCGTGCCTTGGCCTTGTTAA
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