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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 115417.EPrPW00000016084 |
ProteomeId | EsuBft1047_7 |
Protein domains | Coil |
Protein domains | IPR002893 |
Protein domains | SSF144232 |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 2 |
Max annot lvl | 121069|Pythiales |
Length | 307 |
Hectar predicted targeting category | other localisation |
Evalue | 4.67e-05 |
EggNOG OGs | 28N85@1|root,2QUTF@2759|Eukaryota,1MA86@121069|Pythiales |
Ec32 ortholog description | Zinc finger, MYND-type |
Ec32 ortholog | Ec-10_001660.1 |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Description | Source PGD |
COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1047_7a-0001 ID=EsuBft1047_7a-0001|Name=EsuBft1047_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3071bp|location=Sequence derived from alignment at Scaffold_512:508781..513338+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTCGCCTGCTGTCTGTGAGTTGACTCTCTGTCTCCCCCGTCGCCGCTTCA CCTACAGAGCATACCTCGACCGGTGAGTTGACTGTGGGATACCGAGACCT GGGCATTGTCGTTAGGAGGGGGGAGACACCAGCGGCCTACGTATACGAAA GCACACATGACGGCCGAAAACGGGAGTGCGGAGGCGGTCGTGAAGTCGAA CGATGTCGCGAAAGCCGTGTGGGCGGAAATCGTAAAGCTCCGAGACGAGA TACCGCCTCCCCCGGCCGGAGGGCTATACCCTGACGACAAGGCGGCGAAG GCCTTCCAAGCCGCGGATGCTGCCGTTGCCTCGCTCTGCGGCGTGCCCCG GGAGCAGATGCTCGAGGGGTTCACCCAGCTCGTGGAAGGCTCCCGCTTGA ACGATCTGCTGAACGCGCTTGTCGCCAGCGAGGGCCACCCCGCGCTTCAG CACTCTTGCCTGATGGTGCTGTGCGGCGTCGCCTCGCTCCAGCAGGCACA CGTCGCCATCACCGAGCGCCGAGACGTGCTGCAGGCGCTCCTGAAGGCCC TGGCCTCGCCGACAGCGCACCAGATCAGCCCCGAGGGTTCCGTCGGGGAA GACGACCTGCAGATCAACCCAAGCGTGGGGTCAGCGATCTGTCTCAACAG CCTTCTGGTGTCGTGCGGAGGACTGGGAGAAGACACGATCAAGGTGTGGC AGGAGCTCGACGCCCTGTCCGCCATCACGTCGGCCCTCGAGTCCCACGCT GTCTTCGAGGGCGGCGGGGACGAAGACGTGCTGCCCGCAATGCTATTCGG CCTGGCCACGCCTCTCCTGACCAACTTCCAGCAGCAGCAGCGAGCCAGGC AGGAGCTGGAGCAGCAGCAAAAGCAGCAGCAGCAGGCCAGTGCAGCATCA AAAGCAACACCGCCAGCAGGAGAGCAGGGAGGGGAAACGGCAACACCACC ACCAGACACAGCCTCGAAGAAGGAAGGCGCCACCGCCGGCGCCGGCGCTG TCGTCGACGCAGAGGCCGACAAGGCCTCCAGAGCCGCGCGCCAGCGCCTG GCGGAGGCTTTCCTGCGCCTGCTCGCGGAGCGCCGGGAGTGGGTCGCGCG CAGCCTTGCCATGGCGGCCAACGCCTCCCCGACCGACCTCTCGGGCGGCG GCGCCACGGCGGCCGCCCCCGTGACCATCAACAACCTCCTGGTGAACTCC CTCGCCCACGCCGACCTTCTGGGTGCGTTCACGAGGCTGACACCCGTGCG GCTGAGGGCTCAGGCCGTGGCCGCGGCGCGGCAGTGCGAGACCGACGGGA CGTTCGCCCCCGGGTTCGGCGCGCAGCTGGCGCAGCTTCTGGGGCTGGGC GGGCAGCAGGAGCTCAACCGGAGGATGGCCGGCCGCACTGTTCAGAAGAT CAAAAACAAGGAGGCGGCGAGGGCGGCCAACATCATGTGCGCTAGGCCGG CTTGCGGGAAGCGGCAGGGGAACGCGAGCGGCGGCGCCAAGTTCAAGGTC TGCTCCCGCTGCCAGGTGGCGATGTACTGCTCCGGCGAGTGCCAGAAGGC TCACTGGAAAACGCACAAGATGGAGTGCAGGCAGAAGTAGTGACGCGAGC GGTAACGCCACCCTGGGGGGATGTTGTCGGTGAGAATTGCGCGAGGGATA TGTACGGCGGTGGGCGGCGCTATTACTGATTACAGTATTCGTTGGCCCTT GAAGCTGCTTGACCAGACGTTCAGTACTCGTGCGTGCGGTCGTACGTCAA AGCGCGTTTTGTTGATGCTTTTGAGGGCGGTTTAAGGGCCTCAGCTGGCA AAGGGTTCCCCAGAGGTCCATAATAAGACCTAATCCACCCGGAGTGTCGG ACCGTTTGGGGCTCTTCGATTGTATCTTCGAAGAGTTCATCCTCGCAGTC ATGGAAGACTACATTCCATATGTAGCTGGAGTCACCAAGAACAACAACGG GTATCGACGAGTTGTTGTGTCCATTAATAATCCTTCTCCACCTTCGGCCC TTGAGGTGGGCCGGATAGGGGCGGGATGAACCGGCTGGGAAGGAAGCGAG AGTAAAATGGGCAGCCAAGGTCTCACTCTCAGGACGCTTGTGAGGTGGTC GGGATAGTGGTACTCGAGCAAGAGAGCACGCAGCAAAGCCCTGTTTCGAC TCAGGGGTAGGTGCCCTACGAAAAGGCGTGGTCAAGCAGCGACCACTCAT TATGGCCAGTACCCCCTTTTCCCGGGTAAGTGTTGAGCTCATGTAAAACA GCAGTGGGTGCCTATCCCAACCCCTGGCGGATGGTTGTTGTTGTTGCTGA TGTCAAGTCACACTTTCGCGTCTGTCGGAGAGGATCATCCACATCACCGG TACCGCAGGATGTTAGGTGGCGTGTGCTGTGCGCCTTCGTGTGTATGTGT TTCGTTGCGACGGGTGTATACTATTCACGGGTACAGTAGCGGAATTTAGT TGTGTGATGGGTAGAAGGGGGTGGAACTGTGCATGGTTGTCTCCTTTTTT GTGATGGTGCGTAGAGCAAAGTTCCTCCCTCTGTTTCTTAGAGCGTTCTG ATACATGTCTCGCTGGCCGTCTGTGTGACGGCACACGGAGTCTGCTTTTC CTGTGGTCTGTCTAGAGCTGGGGGGAGTGTCCTACTTCTTAACCTTCGAA ATAGAAAAGAGTGTGCCCAAGACCACAAAGGGGCTACACCACTGCAAAAA ATCACAACCTGTGTGCAACTACCTGGTACTGCTGTACAGGGATCGCAACC TTGTCCCTTTGGGCGCACTAGATTTTCGAGATCCTCAAAAGAGGTTAGCG TGCGAAGCATGTACGCCCTCGGAGATGTTGATGTGGCCCGTAGGAGAAAG CAGCTCTGCTTGGTCTGAAAACAGCGAATCGTCCCTGGCAGGCGTTAGGA GATTTTACCCTTTCATGAAGGGGATTTCTACATTGGTGTTTGGAGCTGAG GCTGTGCATGACGGCAATGTTTTTTTGTTGTTTGAAGATTCTTGTTTTCC CGCTGCCGCAATCGCCGGTCATGACCTGTCCCCGAACACCTGGCCCTCGA GATTCGTCAACAAGGTTCTCC back to topprotein sequence of EsuBft1047_7a-0001 >EsuBft1047_7 ID=EsuBft1047_7|Name=EsuBft1047_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=477bp
MTAENGSAEAVVKSNDVAKAVWAEIVKLRDEIPPPPAGGLYPDDKAAKAF QAADAAVASLCGVPREQMLEGFTQLVEGSRLNDLLNALVASEGHPALQHS CLMVLCGVASLQQAHVAITERRDVLQALLKALASPTAHQISPEGSVGEDD LQINPSVGSAICLNSLLVSCGGLGEDTIKVWQELDALSAITSALESHAVF EGGGDEDVLPAMLFGLATPLLTNFQQQQRARQELEQQQKQQQQASAASKA TPPAGEQGGETATPPPDTASKKEGATAGAGAVVDAEADKASRAARQRLAE AFLRLLAERREWVARSLAMAANASPTDLSGGGATAAAPVTINNLLVNSLA HADLLGAFTRLTPVRLRAQAVAAARQCETDGTFAPGFGAQLAQLLGLGGQ QELNRRMAGRTVQKIKNKEAARAANIMCARPACGKRQGNASGGAKFKVCS RCQVAMYCSGECQKAHWKTHKMECRQK back to topmRNA from alignment at Scaffold_512:508781..513338+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1047_7a-0001 ID=EsuBft1047_7a-0001|Name=EsuBft1047_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4558bp|location=Sequence derived from alignment at Scaffold_512:508781..513338+ (Ectocarpus subulatus male Bft15b) GTCGCCTGCTGTCTGTGAGTTGACTCTCTGTCTCCCCCGTCGCCGCTTCA
CCTACAGAGCATACCTCGACCGGTGAGTTGACTGTGGGATACCGAGACCT
GGGCATTGTCGTTAGGAGGGGGGAGACACCAGGTGCGTTGGTTTTCGTTC
ATTGCAGTAAAGGTTGTACTTGCGCACGGGCCGCTCGCTCGGCTGCCTGC
TGAGAGGAGAGCGTTCGACAGCCTCACGCCGCACGCCCACAACATCCCAA
GCCTTTGAGCCGATGAATCCATGGTGCTGTCTTATCGATTCAAGTCGTGT
CCCGAGGTGCATCCCGGCAACAGCAGGCGGAGCGAACCAGCAGCAGTACA
GTAGTGGTTGGTCATTGGGGCTCCGCAAGACAACAGTGAGAAACACGGTT
CTCAGAAAATGTGTTCCAACACTTTCACAGAGAAGCCAGGATCTGTTACG
GCTCTCACAGGAGAGTTTTTTTCACGGCAACCGGAGATTGCAGGCTGGCC
CACGTGTTTTTCTGCATCGCCCGCGCCTGGTCTGTCGAGGGCTGGACTCC
TTTGGGGTCGATTGTTTTCTTTTAACACGGGAGTGACCCCTCTTGACGCC
AATAGCACATCAAGAACATTTTGGTACATTTTGCAGTCATGTTCCTACAA
TCGGAAAAAAGAAAGCATGAATTATTTCGGGTCATCGGGTGCTCGATATT
TGGTCCGATTTTTTTTGCCTGAAGCTTCAACAAACCTAAATACAACTGAT
GCCGCTGCCACAGGCCGGTCTCATTGTCATCGCACGCCAAACCAGCCATT
GCATCGTTCTTCAGTCACTGGCTTCGTCGACATTCCGTCTTTCTCAACAT
TTTCGTCAAAACTGCCTACGACCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNN
NCCCCCCCCCAGCGGCCTACGTATACGAAAGCACACATGACGGCCGAAAA
CGGGAGTGCGGAGGCGGTCGTGAAGTCGAACGATGTCGCGAAAGCCGTGT
GGGCGGAAATCGTAAAGCTCCGAGACGAGATACCGCCTCCCCCGGCCGGA
GGGCTATACCCTGACGACAAGGCGGCGAAGGCCTTCCAAGCCGCGGATGC
TGCCGTTGCCTCGCTCTGCGGCGTGCCCCGGGAGCAGATGCTCGAGGGGT
TCACCCAGCTCGTGGAAGGCTCCCGCTTGAACGATCTGCTGAACGCGCTT
GTCGCCAGCGAGGGCCACCCCGCGCTTCAGCACTCTTGCCTGATGGTGCT
GTGCGGCGTCGCCTCGCTCCAGCAGGCACACGTCGCCATCACCGAGCGCC
GAGACGTGCTGCAGGCGCTCCTGAAGGCCCTGGCCTCGCCGACAGCGCAC
CAGATCAGCCCCGAGGGTTCCGTCGGGGAAGACGACCTGCAGATCAACCC
AAGCGTGGGGTCAGCGATCTGTCTCAACAGGTCAGTGAGTCTGTTGCGCC
AAAAGTTGCTGCTTCTCAGAGACAGCTGTACTGCTCTGCTGCAGCCAATG
AGTAGGTGGACCAATGAATCTCTCTTCAGAAGCATGGTAATTTGGCACTG
GGGTTTACTGGGCTGACTTAACGAAACGTGGAAGCTGCCTCAAAGCCGAC
GATGATTAGATGCTTGCACGCATGAACCCGGAGCTGGCGCAGCCGTGAGC
AAAGTGTCTCAACGCATGAGAGACACAAGGCCATAGCACTTTGACGGCGT
CATCAGTGTCCACGTCGCAAACGTCTAATACCTTTCGACCTTTTGCAGTA
TTCGTCCGCGCGATGGCCACAGTGGACGTATCTGTCCCCCTTCGAGATGG
CAGGAACTGCAAGCCTTTCCAATGCTGCTGAAAAGGCTTCCGCCGAGGTG
TCGTGGGTGCAGCACGAGAAATGTGCAGAAAACGGAGGCCAGTTTGCCCG
GGGGAACACAACGACAGAAGCACCTTTGTGCTTCACATGTCTTTCGGCAT
GATTGTGCTTGATTGGCGAGGTGCCCTCGTTTGGGCACGAGAGTATGCAA
AAAGAACGAAGAACAATTCTAATCATTTGTGAACTCTCCCCGGCCCCCCT
CCCCCCCCACCCTCACCTGCTCCGCGACGCTCACCAGCCTTCTGGTGTCG
TGCGGAGGACTGGGAGAAGACACGATCAAGGTGTGGCAGGAGCTCGACGC
CCTGTCCGCCATCACGTCGGCCCTCGAGTCCCACGCTGTCTTCGAGGGCG
GCGGGGACGAAGACGTGCTGCCCGCAATGCTATTCGGCCTGGCCACGCCT
CTCCTGACCAACTTCCAGCAGCAGCAGCGAGCCAGGCAGGAGCTGGAGCA
GCAGCAAAAGCAGCAGCAGCAGGCCAGTGCAGCATCAAAAGCAACACCGC
CAGCAGGAGAGCAGGGAGGGGAAACGGCAACACCACCACCAGACACAGCC
TCGAAGAAGGAAGGCGCCACCGCCGGCGCCGGCGCTGTCGTCGACGCAGA
GGCCGACAAGGCCTCCAGAGCCGCGCGCCAGCGCCTGGCGGAGGCTTTCC
TGCGCCTGCTCGCGGAGCGCCGGGAGTGGGTCGCGCGCAGCCTTGCCATG
GCGGCCAACGCCTCCCCGACCGACCTCTCGGGCGGCGGCGCCACGGCGGC
CGCCCCCGTGACCATCAACAACCTCCTGGTGAACTCCCTCGCCCACGCCG
ACCTTCTGGGTGCGTTCACGAGGCTGACACCCGTGCGGCTGAGGGCTCAG
GCCGTGGCCGCGGCGCGGCAGTGCGAGACCGACGGGACGTTCGCCCCCGG
GTTCGGCGCGCAGCTGGCGCAGCTTCTGGGGCTGGGCGGGCAGCAGGAGC
TCAACCGGAGGATGGCCGGCCGCACTGTTCAGAAGATCAAAAACAAGGAG
GCGGCGAGGGCGGCCAACATCATGTGCGCTAGGCCGGCTTGCGGGAAGCG
GCAGGGGAACGCGAGCGGCGGCGCCAAGTTCAAGGTCTGCTCCCGCTGCC
AGGTGGCGATGTACTGCTCCGGCGAGTGCCAGAAGGCTCACTGGAAAACG
CACAAGATGGAGTGCAGGCAGAAGTAGTGACGCGAGCGGTAACGCCACCC
TGGGGGGATGTTGTCGGTGAGAATTGCGCGAGGGATATGTACGGCGGTGG
GCGGCGCTATTACTGATTACAGTATTCGTTGGCCCTTGAAGCTGCTTGAC
CAGACGTTCAGTACTCGTGCGTGCGGTCGTACGTCAAAGCGCGTTTTGTT
GATGCTTTTGAGGGCGGTTTAAGGGCCTCAGCTGGCAAAGGGTTCCCCAG
AGGTCCATAATAAGACCTAATCCACCCGGAGTGTCGGACCGTTTGGGGCT
CTTCGATTGTATCTTCGAAGAGTTCATCCTCGCAGTCATGGAAGACTACA
TTCCATATGTAGCTGGAGTCACCAAGAACAACAACGGGTATCGACGAGTT
GTTGTGTCCATTAATAATCCTTCTCCACCTTCGGCCCTTGAGGTGGGCCG
GATAGGGGCGGGATGAACCGGCTGGGAAGGAAGCGAGAGTAAAATGGGCA
GCCAAGGTCTCACTCTCAGGACGCTTGTGAGGTGGTCGGGATAGTGGTAC
TCGAGCAAGAGAGCACGCAGCAAAGCCCTGTTTCGACTCAGGGGTAGGTG
CCCTACGAAAAGGCGTGGTCAAGCAGCGACCACTCATTATGGCCAGTACC
CCCTTTTCCCGGGTAAGTGTTGAGCTCATGTAAAACAGCAGTGGGTGCCT
ATCCCAACCCCTGGCGGATGGTTGTTGTTGTTGCTGATGTCAAGTCACAC
TTTCGCGTCTGTCGGAGAGGATCATCCACATCACCGGTACCGCAGGATGT
TAGGTGGCGTGTGCTGTGCGCCTTCGTGTGTATGTGTTTCGTTGCGACGG
GTGTATACTATTCACGGGTACAGTAGCGGAATTTAGTTGTGTGATGGGTA
GAAGGGGGTGGAACTGTGCATGGTTGTCTCCTTTTTTGTGATGGTGCGTA
GAGCAAAGTTCCTCCCTCTGTTTCTTAGAGCGTTCTGATACATGTCTCGC
TGGCCGTCTGTGTGACGGCACACGGAGTCTGCTTTTCCTGTGGTCTGTCT
AGAGCTGGGGGGAGTGTCCTACTTCTTAACCTTCGAAATAGAAAAGAGTG
TGCCCAAGACCACAAAGGGGCTACACCACTGCAAAAAATCACAACCTGTG
TGCAACTACCTGGTACTGCTGTACAGGGATCGCAACCTTGTCCCTTTGGG
CGCACTAGATTTTCGAGATCCTCAAAAGAGGTTAGCGTGCGAAGCATGTA
CGCCCTCGGAGATGTTGATGTGGCCCGTAGGAGAAAGCAGCTCTGCTTGG
TCTGAAAACAGCGAATCGTCCCTGGCAGGCGTTAGGAGATTTTACCCTTT
CATGAAGGGGATTTCTACATTGGTGTTTGGAGCTGAGGCTGTGCATGACG
GCAATGTTTTTTTGTTGTTTGAAGATTCTTGTTTTCCCGCTGCCGCAATC
GCCGGTCATGACCTGTCCCCGAACACCTGGCCCTCGAGATTCGTCAACAA
GGTTCTCC back to topCoding sequence (CDS) from alignment at Scaffold_512:508781..513338+ >EsuBft1047_7a-0001 ID=EsuBft1047_7a-0001|Name=EsuBft1047_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1434bp|location=Sequence derived from alignment at Scaffold_512:508781..513338+ (Ectocarpus subulatus male Bft15b) ATGACGGCCGAAAACGGGAGTGCGGAGGCGGTCGTGAAGTCGAACGATGT CGCGAAAGCCGTGTGGGCGGAAATCGTAAAGCTCCGAGACGAGATACCGC CTCCCCCGGCCGGAGGGCTATACCCTGACGACAAGGCGGCGAAGGCCTTC CAAGCCGCGGATGCTGCCGTTGCCTCGCTCTGCGGCGTGCCCCGGGAGCA GATGCTCGAGGGGTTCACCCAGCTCGTGGAAGGCTCCCGCTTGAACGATC TGCTGAACGCGCTTGTCGCCAGCGAGGGCCACCCCGCGCTTCAGCACTCT TGCCTGATGGTGCTGTGCGGCGTCGCCTCGCTCCAGCAGGCACACGTCGC CATCACCGAGCGCCGAGACGTGCTGCAGGCGCTCCTGAAGGCCCTGGCCT CGCCGACAGCGCACCAGATCAGCCCCGAGGGTTCCGTCGGGGAAGACGAC CTGCAGATCAACCCAAGCGTGGGGTCAGCGATCTGTCTCAACAGCCTTCT GGTGTCGTGCGGAGGACTGGGAGAAGACACGATCAAGGTGTGGCAGGAGC TCGACGCCCTGTCCGCCATCACGTCGGCCCTCGAGTCCCACGCTGTCTTC GAGGGCGGCGGGGACGAAGACGTGCTGCCCGCAATGCTATTCGGCCTGGC CACGCCTCTCCTGACCAACTTCCAGCAGCAGCAGCGAGCCAGGCAGGAGC TGGAGCAGCAGCAAAAGCAGCAGCAGCAGGCCAGTGCAGCATCAAAAGCA ACACCGCCAGCAGGAGAGCAGGGAGGGGAAACGGCAACACCACCACCAGA CACAGCCTCGAAGAAGGAAGGCGCCACCGCCGGCGCCGGCGCTGTCGTCG ACGCAGAGGCCGACAAGGCCTCCAGAGCCGCGCGCCAGCGCCTGGCGGAG GCTTTCCTGCGCCTGCTCGCGGAGCGCCGGGAGTGGGTCGCGCGCAGCCT TGCCATGGCGGCCAACGCCTCCCCGACCGACCTCTCGGGCGGCGGCGCCA CGGCGGCCGCCCCCGTGACCATCAACAACCTCCTGGTGAACTCCCTCGCC CACGCCGACCTTCTGGGTGCGTTCACGAGGCTGACACCCGTGCGGCTGAG GGCTCAGGCCGTGGCCGCGGCGCGGCAGTGCGAGACCGACGGGACGTTCG CCCCCGGGTTCGGCGCGCAGCTGGCGCAGCTTCTGGGGCTGGGCGGGCAG CAGGAGCTCAACCGGAGGATGGCCGGCCGCACTGTTCAGAAGATCAAAAA CAAGGAGGCGGCGAGGGCGGCCAACATCATGTGCGCTAGGCCGGCTTGCG GGAAGCGGCAGGGGAACGCGAGCGGCGGCGCCAAGTTCAAGGTCTGCTCC CGCTGCCAGGTGGCGATGTACTGCTCCGGCGAGTGCCAGAAGGCTCACTG GAAAACGCACAAGATGGAGTGCAGGCAGAAGTAG back to top
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