EsuBft1047_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1047_5a-0001
Unique Name	EsuBft1047_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_512	contig	Scaffold_512:485606..487142 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1047_5
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	125
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1047_5a	EsuBft1047_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_512 485606..487142 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1047_5a-0001-exon	EsuBft1047_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_512 485606..486616 +
EsuBft1047_5a-0001-exon	agat-exon-58428	Ectocarpus subulatus male Bft15b	exon	Scaffold_512 486903..487142 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1047_5a-0001-cds	EsuBft1047_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_512 485606..486616 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1047_5a-0001	EsuBft1047_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_512 485606..487142 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_512:485606..487142+
coding sequence from alignment at Scaffold_512:485606..487142+

spliced messenger RNA

>EsuBft1047_5a-0001 ID=EsuBft1047_5a-0001|Name=EsuBft1047_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1251bp|location=Sequence derived from alignment at Scaffold_512:485606..487142+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGAGTCCGGCAGCGGCGTCACCTCCGGAACACCCCACGCCCGGAC
GCTCTTCACGTCCGCGGCGCTCAAGGCCATGAAACAGGAGGTGCCGGTCC
TCCACAAGCCCTCCTACGACGCAGGCCTCGATCTTCGTCTCAAGAAGGCA
CAGGACCACGATATCGACATGCGCGCTGCTTGGGACGCCGCCGACCGGAA
GCTGCACGAGGCCGAAAAGCGGGCGGTCATCCCCGCCTCCGACCTTCTCC
ATGGTACTTCTCGCGGCCTGAAGCTGCAAGATCTCTACAAAGAGCAGCAG
ACGAACGCCGCCGAGAAGGCCAAGGTCGTGGAAGAGGCGGGTGCAACCAC
TCTCGACCTCCAGCGGAAGCTGGCCGAGTCCCGTGCGCACGCGGACGCCG
CAGAGGCCAAGAAGGACGCCCTTCTCCGCCGCCTCTCGCACGAATCGTCC
CTCGACTGCCCCCCGCACGACGACGTCGAGCTGACCAAACTCCTGGATGA
GCTTGAGACGTGCCTCAAGAAGGTCAACGGGCTTCGGGCGCAGTGGCACA
GATACCTTCGCGTGCTCGAGTGGCACTACACCGGCGACCTTGACTACGTG
AGCTCGTCCCTCCAGAGCTTGGCATCCTCGGACGGTCTCTTGCCGCCCCA
CGTCCTGGCTGTGCTGTCTGCGGAAGACGCCAAGTGCGCCCAGGACACGG
GCAGGGCCCGGGCGGCAGAGCTGCACCTCTCTGCGGAGGACAGGTACCGG
GGAATAGTGGACGAGGTAGGCACTCTGACTCCGTGCCTCGGCACCAGACC
ATCGATCGAAGCGCGCGAACTGGGTCTGGCCGAGGAAAAACTGGTGAGGG
TATCGGCGATGGTGTCGGCGTTCAACCTGTTCCGCACTGCAGAGACGTAC
AAGAAGATGGATGCGCAGCGAGCCTGTAACGAGGACAACCAGGCCATGTC
CGACGTTTCGCAGTGCGAGGAGCTCCTTGCGGAAGCGGAGGTGCACGAGC
AGGGGGCTCTGGCTGACCAGAAGGAGGCCGAGCAGGCCGCGTCCGAGACG
CTGCAGGACACCGAGAAGGTCGGGGCCGAGATGAGCGACGTCGAGAAGCG
GTTTGTCGACACTGCCGACGACGACAAGGCCATCAAGGAACTCGTGGCCG
AGCCCCGAGAAGCCTGGGACGAGGCCATGTTGACGGTGGCTCGCACCAAG
CAACACTTCAATGACTCAACAGTGTTGCGGACAGGATGCGTGTGGCCGTG
A

protein sequence of EsuBft1047_5a-0001

>EsuBft1047_5 ID=EsuBft1047_5|Name=EsuBft1047_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=416bp
MQESGSGVTSGTPHARTLFTSAALKAMKQEVPVLHKPSYDAGLDLRLKKA
QDHDIDMRAAWDAADRKLHEAEKRAVIPASDLLHGTSRGLKLQDLYKEQQ
TNAAEKAKVVEEAGATTLDLQRKLAESRAHADAAEAKKDALLRRLSHESS
LDCPPHDDVELTKLLDELETCLKKVNGLRAQWHRYLRVLEWHYTGDLDYV
SSSLQSLASSDGLLPPHVLAVLSAEDAKCAQDTGRARAAELHLSAEDRYR
GIVDEVGTLTPCLGTRPSIEARELGLAEEKLVRVSAMVSAFNLFRTAETY
KKMDAQRACNEDNQAMSDVSQCEELLAEAEVHEQGALADQKEAEQAASET
LQDTEKVGAEMSDVEKRFVDTADDDKAIKELVAEPREAWDEAMLTVARTK
QHFNDSTVLRTGCVWP

mRNA from alignment at Scaffold_512:485606..487142+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1047_5a-0001 ID=EsuBft1047_5a-0001|Name=EsuBft1047_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1537bp|location=Sequence derived from alignment at Scaffold_512:485606..487142+ (Ectocarpus subulatus male Bft15b)
ATGCAGGAGTCCGGCAGCGGCGTCACCTCCGGAACACCCCACGCCCGGAC
GCTCTTCACGTCCGCGGCGCTCAAGGCCATGAAACAGGAGGTGCCGGTCC
TCCACAAGCCCTCCTACGACGCAGGCCTCGATCTTCGTCTCAAGAAGGCA
CAGGACCACGATATCGACATGCGCGCTGCTTGGGACGCCGCCGACCGGAA
GCTGCACGAGGCCGAAAAGCGGGCGGTCATCCCCGCCTCCGACCTTCTCC
ATGGTACTTCTCGCGGCCTGAAGCTGCAAGATCTCTACAAAGAGCAGCAG
ACGAACGCCGCCGAGAAGGCCAAGGTCGTGGAAGAGGCGGGTGCAACCAC
TCTCGACCTCCAGCGGAAGCTGGCCGAGTCCCGTGCGCACGCGGACGCCG
CAGAGGCCAAGAAGGACGCCCTTCTCCGCCGCCTCTCGCACGAATCGTCC
CTCGACTGCCCCCCGCACGACGACGTCGAGCTGACCAAACTCCTGGATGA
GCTTGAGACGTGCCTCAAGAAGGTCAACGGGCTTCGGGCGCAGTGGCACA
GATACCTTCGCGTGCTCGAGTGGCACTACACCGGCGACCTTGACTACGTG
AGCTCGTCCCTCCAGAGCTTGGCATCCTCGGACGGTCTCTTGCCGCCCCA
CGTCCTGGCTGTGCTGTCTGCGGAAGACGCCAAGTGCGCCCAGGACACGG
GCAGGGCCCGGGCGGCAGAGCTGCACCTCTCTGCGGAGGACAGGTACCGG
GGAATAGTGGACGAGGTAGGCACTCTGACTCCGTGCCTCGGCACCAGACC
ATCGATCGAAGCGCGCGAACTGGGTCTGGCCGAGGAAAAACTGGTGAGGG
TATCGGCGATGGTGTCGGCGTTCAACCTGTTCCGCACTGCAGAGACGTAC
AAGAAGATGGATGCGCAGCGAGCCTGTAACGAGGACAACCAGGCCATGTC
CGACGTTTCGCAGTGCGAGGAGCTCCTTGCGGAAGCGGAGGTGCACGAGC
AGGGGGCTCTGGTGAGTGTCATGGATTTCTTGCTTGTCTGTGCGCGCCAG
CAGTACTGACTAACATTCGTGCGCACCTTGTTTACGAAGGAGTACAATGA
ACGTCGTCGCATTCCCTTTTGCCGTGCCCCGTCCAAACCAACAAGGAAAT
GCTGTAAATAGTCCGTTGTTCCACACGAGCAAGGGCAACAAACCCAAATG
ATTTGCAACTGGTGCCTGCGCAAATTGTAAAGTACCCGCGCCTGTCTCCG
CCTTGCATGTTGGCGTTTCGTCCCTCTTCTCCTTCACTTCACTTCAGGCT
GACCAGAAGGAGGCCGAGCAGGCCGCGTCCGAGACGCTGCAGGACACCGA
GAAGGTCGGGGCCGAGATGAGCGACGTCGAGAAGCGGTTTGTCGACACTG
CCGACGACGACAAGGCCATCAAGGAACTCGTGGCCGAGCCCCGAGAAGCC
TGGGACGAGGCCATGTTGACGGTGGCTCGCACCAAGCAACACTTCAATGA
CTCAACAGTGTTGCGGACAGGATGCGTGTGGCCGTGA

Coding sequence (CDS) from alignment at Scaffold_512:485606..487142+

>EsuBft1047_5a-0001 ID=EsuBft1047_5a-0001|Name=EsuBft1047_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1251bp|location=Sequence derived from alignment at Scaffold_512:485606..487142+ (Ectocarpus subulatus male Bft15b)
ATGCAGGAGTCCGGCAGCGGCGTCACCTCCGGAACACCCCACGCCCGGAC
GCTCTTCACGTCCGCGGCGCTCAAGGCCATGAAACAGGAGGTGCCGGTCC
TCCACAAGCCCTCCTACGACGCAGGCCTCGATCTTCGTCTCAAGAAGGCA
CAGGACCACGATATCGACATGCGCGCTGCTTGGGACGCCGCCGACCGGAA
GCTGCACGAGGCCGAAAAGCGGGCGGTCATCCCCGCCTCCGACCTTCTCC
ATGGTACTTCTCGCGGCCTGAAGCTGCAAGATCTCTACAAAGAGCAGCAG
ACGAACGCCGCCGAGAAGGCCAAGGTCGTGGAAGAGGCGGGTGCAACCAC
TCTCGACCTCCAGCGGAAGCTGGCCGAGTCCCGTGCGCACGCGGACGCCG
CAGAGGCCAAGAAGGACGCCCTTCTCCGCCGCCTCTCGCACGAATCGTCC
CTCGACTGCCCCCCGCACGACGACGTCGAGCTGACCAAACTCCTGGATGA
GCTTGAGACGTGCCTCAAGAAGGTCAACGGGCTTCGGGCGCAGTGGCACA
GATACCTTCGCGTGCTCGAGTGGCACTACACCGGCGACCTTGACTACGTG
AGCTCGTCCCTCCAGAGCTTGGCATCCTCGGACGGTCTCTTGCCGCCCCA
CGTCCTGGCTGTGCTGTCTGCGGAAGACGCCAAGTGCGCCCAGGACACGG
GCAGGGCCCGGGCGGCAGAGCTGCACCTCTCTGCGGAGGACAGGTACCGG
GGAATAGTGGACGAGGTAGGCACTCTGACTCCGTGCCTCGGCACCAGACC
ATCGATCGAAGCGCGCGAACTGGGTCTGGCCGAGGAAAAACTGGTGAGGG
TATCGGCGATGGTGTCGGCGTTCAACCTGTTCCGCACTGCAGAGACGTAC
AAGAAGATGGATGCGCAGCGAGCCTGTAACGAGGACAACCAGGCCATGTC
CGACGTTTCGCAGTGCGAGGAGCTCCTTGCGGAAGCGGAGGTGCACGAGC
AGGGGGCTCTGGCTGACCAGAAGGAGGCCGAGCAGGCCGCGTCCGAGACG
CTGCAGGACACCGAGAAGGTCGGGGCCGAGATGAGCGACGTCGAGAAGCG
GTTTGTCGACACTGCCGACGACGACAAGGCCATCAAGGAACTCGTGGCCG
AGCCCCGAGAAGCCTGGGACGAGGCCATGTTGACGGTGGCTCGCACCAAG
CAACACTTCAATGACTCAACAGTGTTGCGGACAGGATGCGTGTGGCCGTG
A