EsuBft1047_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1047_4a-0001
Unique NameEsuBft1047_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_512contigScaffold_512:484930..485344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1047_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length35
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1047_4aEsuBft1047_4aEctocarpus subulatus male Bft15bgeneScaffold_512 484930..485344 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1047_4a-0001-exonEsuBft1047_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_512 484930..485190 -
EsuBft1047_4a-0001-exonagat-exon-58427Ectocarpus subulatus male Bft15bexonScaffold_512 485249..485344 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1047_4a-0001-cdsEsuBft1047_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_512 484930..485190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1047_4a-0001EsuBft1047_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_512 484930..485344 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1047_4a-0001 ID=EsuBft1047_4a-0001|Name=EsuBft1047_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=357bp|location=Sequence derived from alignment at Scaffold_512:484930..485344- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGAGTCCGGCAGCGGCGTCACCTCCGGAACACCCCACGCCCGGAC
GCTCTTCACGTCCGCGGCGCTCAAGGCCATGAAACAGGAGGTGCCGGACC
ACGAGATCGACATGCGCGCTGCTTGGGACGCCGCCGAGGGGGGAATGCAC
GAGGCCGAAAAGCGGGCGGTCATCCTCGCCTCCGACCTTCTCCATGGTAC
TTCTCGCGGCCTGAAGCTGCAAGATCTCTACAAAGAGCAGCAGACGAACG
CCGCCGAGAAGGCCAAGGTCGTGGAAGCGGCGGGTGCAACCACTCTCGAC
CTCCAGCGGAAGCTGGCCGAGTCCCGTGCGCACGCGGACGCCGCAGAGGC
CAAGTAG
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protein sequence of EsuBft1047_4a-0001

>EsuBft1047_4 ID=EsuBft1047_4|Name=EsuBft1047_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=118bp
MQESGSGVTSGTPHARTLFTSAALKAMKQEVPDHEIDMRAAWDAAEGGMH
EAEKRAVILASDLLHGTSRGLKLQDLYKEQQTNAAEKAKVVEAAGATTLD
LQRKLAESRAHADAAEAK
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mRNA from alignment at Scaffold_512:484930..485344-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1047_4a-0001 ID=EsuBft1047_4a-0001|Name=EsuBft1047_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=415bp|location=Sequence derived from alignment at Scaffold_512:484930..485344- (Ectocarpus subulatus male Bft15b)
ATGCAGGAGTCCGGCAGCGGCGTCACCTCCGGAACACCCCACGCCCGGAC
GCTCTTCACGTCCGCGGCGCTCAAGGCCATGAAACAGGAGGTGCCGGTCC
TCCACAAGCCCTCCTACGACGCAGGCCTCGATCTTCGTCTTCAAGAAGGC
ACAGGACCACGAGATCGACATGCGCGCTGCTTGGGACGCCGCCGAGGGGG
GAATGCACGAGGCCGAAAAGCGGGCGGTCATCCTCGCCTCCGACCTTCTC
CATGGTACTTCTCGCGGCCTGAAGCTGCAAGATCTCTACAAAGAGCAGCA
GACGAACGCCGCCGAGAAGGCCAAGGTCGTGGAAGCGGCGGGTGCAACCA
CTCTCGACCTCCAGCGGAAGCTGGCCGAGTCCCGTGCGCACGCGGACGCC
GCAGAGGCCAAGTAG
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Coding sequence (CDS) from alignment at Scaffold_512:484930..485344-

>EsuBft1047_4a-0001 ID=EsuBft1047_4a-0001|Name=EsuBft1047_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=357bp|location=Sequence derived from alignment at Scaffold_512:484930..485344- (Ectocarpus subulatus male Bft15b)
ATGCAGGAGTCCGGCAGCGGCGTCACCTCCGGAACACCCCACGCCCGGAC
GCTCTTCACGTCCGCGGCGCTCAAGGCCATGAAACAGGAGGTGCCGGACC
ACGAGATCGACATGCGCGCTGCTTGGGACGCCGCCGAGGGGGGAATGCAC
GAGGCCGAAAAGCGGGCGGTCATCCTCGCCTCCGACCTTCTCCATGGTAC
TTCTCGCGGCCTGAAGCTGCAAGATCTCTACAAAGAGCAGCAGACGAACG
CCGCCGAGAAGGCCAAGGTCGTGGAAGCGGCGGGTGCAACCACTCTCGAC
CTCCAGCGGAAGCTGGCCGAGTCCCGTGCGCACGCGGACGCCGCAGAGGC
CAAGTAG
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