EsuBft1047_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1047_2a-0001
Unique NameEsuBft1047_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_512contigScaffold_512:474392..474824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1047_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length43
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1047_2aEsuBft1047_2aEctocarpus subulatus male Bft15bgeneScaffold_512 474392..474824 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1047_2a-0001-exonEsuBft1047_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_512 474392..474824 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1047_2a-0001-exonagat-three_prime_utr-455Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_512 474392..474520 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1047_2a-0001-cdsEsuBft1047_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_512 474521..474694 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1047_2a-0001-exonagat-five_prime_utr-279Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_512 474695..474824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1047_2a-0001EsuBft1047_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_512 474521..474694 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1047_2a-0001 ID=EsuBft1047_2a-0001|Name=EsuBft1047_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=433bp|location=Sequence derived from alignment at Scaffold_512:474392..474824- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGGGGGAAGGGTACGCTCACACGCTCCCGAGGGGACGCGTGGGGGGTGGA
ATCGGAGGAGGGTTCGATCGACGTGTCCGAAGAAAGATACAACGGAAAAC
AGGAAGAAGGGCAAAAAGGAGGAATACAAGATGGGCACAAAGAAGGGAAG
ACAGATGGGCACAAAGAAGGGAAGACAGAAGGGCACAAAGGAGGAAAGGT
TGAACAAGGAGACGGAAGGGGAAAAGGAGGAAACATGGGCAGTGACCCAC
CCCAGGCGAGTAGGGAGGAGGATATCCATGAGATGGACCGGAGGTTTAGC
ATAAAGGGGGCGGACCCAAAAGATATGATACAGCAGATGTCTGGGTCTGA
AAATAATCCGACGATTTCCGCTCCGTCGATTCCTCCGTATACCAACGTAG
CTCCGGTGGCAGCTTCAAACCGATTAGACAATC
back to top

protein sequence of EsuBft1047_2a-0001

>EsuBft1047_2 ID=EsuBft1047_2|Name=EsuBft1047_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=57bp
MGTKKGRQMGTKKGRQKGTKEERLNKETEGEKEETWAVTHPRRVGRRISM
RWTGGLA
back to top

mRNA from alignment at Scaffold_512:474392..474824-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1047_2a-0001 ID=EsuBft1047_2a-0001|Name=EsuBft1047_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=433bp|location=Sequence derived from alignment at Scaffold_512:474392..474824- (Ectocarpus subulatus male Bft15b)
GGGGGGAAGGGTACGCTCACACGCTCCCGAGGGGACGCGTGGGGGGTGGA
ATCGGAGGAGGGTTCGATCGACGTGTCCGAAGAAAGATACAACGGAAAAC
AGGAAGAAGGGCAAAAAGGAGGAATACAAGATGGGCACAAAGAAGGGAAG
ACAGATGGGCACAAAGAAGGGAAGACAGAAGGGCACAAAGGAGGAAAGGT
TGAACAAGGAGACGGAAGGGGAAAAGGAGGAAACATGGGCAGTGACCCAC
CCCAGGCGAGTAGGGAGGAGGATATCCATGAGATGGACCGGAGGTTTAGC
ATAAAGGGGGCGGACCCAAAAGATATGATACAGCAGATGTCTGGGTCTGA
AAATAATCCGACGATTTCCGCTCCGTCGATTCCTCCGTATACCAACGTAG
CTCCGGTGGCAGCTTCAAACCGATTAGACAATC
back to top

Coding sequence (CDS) from alignment at Scaffold_512:474392..474824-

>EsuBft1047_2a-0001 ID=EsuBft1047_2a-0001|Name=EsuBft1047_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=174bp|location=Sequence derived from alignment at Scaffold_512:474392..474824- (Ectocarpus subulatus male Bft15b)
ATGGGCACAAAGAAGGGAAGACAGATGGGCACAAAGAAGGGAAGACAGAA
GGGCACAAAGGAGGAAAGGTTGAACAAGGAGACGGAAGGGGAAAAGGAGG
AAACATGGGCAGTGACCCACCCCAGGCGAGTAGGGAGGAGGATATCCATG
AGATGGACCGGAGGTTTAGCATAA
back to top