EsuBft1046_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1046_7a-0001
Unique NameEsuBft1046_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_421contigScaffold_421:357642..357964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1046_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length32
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1046_7aEsuBft1046_7aEctocarpus subulatus male Bft15bgeneScaffold_421 357642..357964 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1046_7a-0001-exonEsuBft1046_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_421 357642..357964 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1046_7a-0001-cdsEsuBft1046_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_421 357642..357899 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1046_7a-0001-exonagat-five_prime_utr-278Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_421 357900..357964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1046_7a-0001EsuBft1046_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_421 357642..357899 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1046_7a-0001 ID=EsuBft1046_7a-0001|Name=EsuBft1046_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=323bp|location=Sequence derived from alignment at Scaffold_421:357642..357964- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTTGACTCCGTCGGGGTACCAGAAGACCGTGAGGCAGACGGCTCTTCAC
CAGAGGGCTGGTGCGATGCACGCGGCGGACATGATGGAGCTGAGTTACTG
GGACACACGCATCTGTTTCCACGTCCTCTTCAGCGAAGCTGTGAAGCACC
CAGAGATGCTCCTCGAGTACGGAGAGGAGGGGGCTGGGGACGGAGACAGC
GAGGCAGAGAATGAGGCCCGCTTCATGGAGTTCGGGATGCTTTATTCGAA
CTGGTGTTTTCTGCCATGCTCAACTAATGCTGTACGTCGTGGGAGCTGCT
GTTACTGTGTGGAGTGGGTGTAG
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protein sequence of EsuBft1046_7a-0001

>EsuBft1046_7 ID=EsuBft1046_7|Name=EsuBft1046_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=85bp
MHAADMMELSYWDTRICFHVLFSEAVKHPEMLLEYGEEGAGDGDSEAENE
ARFMEFGMLYSNWCFLPCSTNAVRRGSCCYCVEWV
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mRNA from alignment at Scaffold_421:357642..357964-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1046_7a-0001 ID=EsuBft1046_7a-0001|Name=EsuBft1046_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=323bp|location=Sequence derived from alignment at Scaffold_421:357642..357964- (Ectocarpus subulatus male Bft15b)
TGTTGACTCCGTCGGGGTACCAGAAGACCGTGAGGCAGACGGCTCTTCAC
CAGAGGGCTGGTGCGATGCACGCGGCGGACATGATGGAGCTGAGTTACTG
GGACACACGCATCTGTTTCCACGTCCTCTTCAGCGAAGCTGTGAAGCACC
CAGAGATGCTCCTCGAGTACGGAGAGGAGGGGGCTGGGGACGGAGACAGC
GAGGCAGAGAATGAGGCCCGCTTCATGGAGTTCGGGATGCTTTATTCGAA
CTGGTGTTTTCTGCCATGCTCAACTAATGCTGTACGTCGTGGGAGCTGCT
GTTACTGTGTGGAGTGGGTGTAG
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Coding sequence (CDS) from alignment at Scaffold_421:357642..357964-

>EsuBft1046_7a-0001 ID=EsuBft1046_7a-0001|Name=EsuBft1046_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=258bp|location=Sequence derived from alignment at Scaffold_421:357642..357964- (Ectocarpus subulatus male Bft15b)
ATGCACGCGGCGGACATGATGGAGCTGAGTTACTGGGACACACGCATCTG
TTTCCACGTCCTCTTCAGCGAAGCTGTGAAGCACCCAGAGATGCTCCTCG
AGTACGGAGAGGAGGGGGCTGGGGACGGAGACAGCGAGGCAGAGAATGAG
GCCCGCTTCATGGAGTTCGGGATGCTTTATTCGAACTGGTGTTTTCTGCC
ATGCTCAACTAATGCTGTACGTCGTGGGAGCTGCTGTTACTGTGTGGAGT
GGGTGTAG
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