EsuBft1046_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1046_6a-0001
Unique Name	EsuBft1046_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_421	contig	Scaffold_421:344023..346095 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7425.NV23817-PA
ProteomeId	EsuBft1046_6
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	207
Evalue	4.87e-05
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3CYKV@33213\|Bilateria,420TT@6656\|Arthropoda,3SQX5@50557\|Insecta,46JPB@7399\|Hymenoptera
Date last modified	2016-06-15
Date creation	2016-06-15
KEGG rclass	RC00063
KEGG ko	ko:K15407
KEGG Reaction	R03789,R10209
EC	2.4.2.29
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	C
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_6a	EsuBft1046_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_421 344023..346095 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_6a-0001-exon	EsuBft1046_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_421 344023..346095 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_6a-0001-exon	agat-three_prime_utr-454	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_421 344023..345885 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_6a-0001-cds	EsuBft1046_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_421 345886..346095 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_6a-0001	EsuBft1046_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_421 345886..346095 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_421:344023..346095-
coding sequence from alignment at Scaffold_421:344023..346095-

spliced messenger RNA

>EsuBft1046_6a-0001 ID=EsuBft1046_6a-0001|Name=EsuBft1046_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2073bp|location=Sequence derived from alignment at Scaffold_421:344023..346095- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGACATTTCCAAAAATTACGTAGGACCCACCCTTTTTAGTGGTCT
TACCGAACTGCTCAAGGTCGACGGCGACAACGAGCCCATTGTCCTGGAGC
GCCTCCGCGCCATCTTCGTCGAAGTGTGGAATGGGGGAGAGATGCCGCAG
GAGTGGAAGGATGCCATCATTAAGGTGTTGTACAAGAAGGGTGACCGGAC
GAACTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNGGGCGAGGAGAAGGCCAGCCGACAACGAGCCAT
CAAACGAGGAGACAGCGGGTCCAAAAAAAGTCTAGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCGACTAGTTTTTCTGTTGCCCTCTCCCCCGTTTGCTGTCGCG
TTCAGACTGTCTCTACGGATATCCCTGTCTCTGTGCGAGTTTGTTTATGT
CCTCGTCTGTCTTTGGTTTATTTCGTTTCATTTTGTTTTGTTTTTTACTG
GCACGAACTGCTGACCCTTGGGGTCCTTCCGGAAGGCTACCCCCCAGGCT
GGTGGTGCGCACGTTCCACTATTTATTTACTTATTTATTTGTTTCTATTT
ATTTTGTTTTCTTGTATTTTATC

protein sequence of EsuBft1046_6a-0001

>EsuBft1046_6 ID=EsuBft1046_6|Name=EsuBft1046_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=70bp
MFDISKNYVGPTLFSGLTELLKVDGDNEPIVLERLRAIFVEVWNGGEMPQ
EWKDAIIKVLYKKGDRTNCX

mRNA from alignment at Scaffold_421:344023..346095-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1046_6a-0001 ID=EsuBft1046_6a-0001|Name=EsuBft1046_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2073bp|location=Sequence derived from alignment at Scaffold_421:344023..346095- (Ectocarpus subulatus male Bft15b)
ATGTTCGACATTTCCAAAAATTACGTAGGACCCACCCTTTTTAGTGGTCT
TACCGAACTGCTCAAGGTCGACGGCGACAACGAGCCCATTGTCCTGGAGC
GCCTCCGCGCCATCTTCGTCGAAGTGTGGAATGGGGGAGAGATGCCGCAG
GAGTGGAAGGATGCCATCATTAAGGTGTTGTACAAGAAGGGTGACCGGAC
GAACTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNGGGCGAGGAGAAGGCCAGCCGACAACGAGCCAT
CAAACGAGGAGACAGCGGGTCCAAAAAAAGTCTAGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCGACTAGTTTTTCTGTTGCCCTCTCCCCCGTTTGCTGTCGCG
TTCAGACTGTCTCTACGGATATCCCTGTCTCTGTGCGAGTTTGTTTATGT
CCTCGTCTGTCTTTGGTTTATTTCGTTTCATTTTGTTTTGTTTTTTACTG
GCACGAACTGCTGACCCTTGGGGTCCTTCCGGAAGGCTACCCCCCAGGCT
GGTGGTGCGCACGTTCCACTATTTATTTACTTATTTATTTGTTTCTATTT
ATTTTGTTTTCTTGTATTTTATC

Coding sequence (CDS) from alignment at Scaffold_421:344023..346095-

>EsuBft1046_6a-0001 ID=EsuBft1046_6a-0001|Name=EsuBft1046_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=210bp|location=Sequence derived from alignment at Scaffold_421:344023..346095- (Ectocarpus subulatus male Bft15b)
ATGTTCGACATTTCCAAAAATTACGTAGGACCCACCCTTTTTAGTGGTCT
TACCGAACTGCTCAAGGTCGACGGCGACAACGAGCCCATTGTCCTGGAGC
GCCTCCGCGCCATCTTCGTCGAAGTGTGGAATGGGGGAGAGATGCCGCAG
GAGTGGAAGGATGCCATCATTAAGGTGTTGTACAAGAAGGGTGACCGGAC
GAACTGCNNN