EsuBft1046_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1046_5a-0001
Unique Name	EsuBft1046_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_421	contig	Scaffold_421:330862..333115 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1046_5
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SignalP-noTM
Protein domains	PTHR32134
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SSF52058
Protein domains	SIGNAL_PEPTIDE_H_REGION
Owner	apollo_admin@sb-roscoff.fr
Note	f-box and fnip repeat-containing protein l60 os:acanthamoeba polyphaga mimivirus gn:mimi [Automatic annotation]
Nb exon	1
Length	2254
Hectar predicted targeting category	signal peptide
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_5a	EsuBft1046_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_421 330862..333115 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_5a-0001-exon	EsuBft1046_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_421 330862..333115 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_5a-0001-cds	EsuBft1046_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_421 330862..331791 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_5a-0001-exon	agat-three_prime_utr-453	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_421 331792..333115 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_5a-0001	EsuBft1046_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_421 330862..331791 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_421:330862..333115+
coding sequence from alignment at Scaffold_421:330862..333115+

spliced messenger RNA

>EsuBft1046_5a-0001 ID=EsuBft1046_5a-0001|Name=EsuBft1046_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2254bp|location=Sequence derived from alignment at Scaffold_421:330862..333115+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCGCGTGCCGGGTGTGCAGGCTTTTGGTTTACTATTGGGACTTCC
GACGGAGGTTCTGCTGCAGAGTTCTGCCATCGAGCTTGGGTCTGGATCAG
GACATCAGCACATGAAAGGACATGCATCTGCAGCAAGCCTCGGATCGATG
TCTTGGCTCAAAAAGCTCAATTGGCTGGTATTGGAGTTAGATACGCCTGC
GAACAAGACCTCGTGGGCGGCCTCCCTGCAGCAGCTATCGTTCGGAGATT
GTTTCAACCAGCCTCTATCCGAGGTCGTGTGGCTGGTCCTCCTGCAGCAT
CTATCGTCTGGAGATAGTTTCAACCAGCCTTTTGACGAAGTTGCGTGGCC
GACCTCGCTGCAGCAGCTATCGTTCGGAAATGAATTCGATCAGACCGTTG
CGGATGTTGTGTGGCCGGCCTCCCTGCGGCTGCTATCGTTTGCATGGCGC
TTCAATCAGCCCGTATCCGAACTCATGTGGCCGGTCTCCCTGCAGCAGCT
ATCGTTCGGATTCGAATTCAACCAGCCCGTAGCCGATGTTGCGTGGCCGG
TCTCCCTGCAGCAGCTGTCGTTTGGATGCTGCTTCAACCAGTCCATCGCC
GAAGTCGTGTGGCTGGCCTGCCTGCAGCAATTATCCTTCGGGTACAAATT
AAACCAACCTATCACTGACGTTGTGTGGCCGGCACCCCTCCGGAAGCGGA
CTTTCGGACACAACTTTGATCAACCCATTGTTGAAATCGCGTGGCCTGCA
TTCCTGCAGCAGCTGCTCTTCGGGAACAGATTGAACCAGCCCATCGCAGA
GGTCGTGCGGCCCGCGTCCCTGCAGCAACTCTCATTCGGGTTCACATTCG
ATCAACCCATCAACGGAGTCGCGTGGCCAGCTTTCCTTGAAAAGCTGCGT
TTTTCCGACATTTTCAGGAAGCCCATTTGACGGAGTCAAGCGGCCGGCGT
CCCTGGAGGAGATCCATTTTGGAAGGTACTTCCGTCTGCCTCGCGCCGGA
TTCGTGTGGCCAAACTCCCTGGTTATCCTATCTTGTGGGGTGTGTCACCG
ACCTATCGCTCGACCAGGCCAGTCAGCCGCGGTGCAAGCTGGGTGAGTGC
AAGTGGCGGAAGCTTTCCGCACGCACGTTTGCTTCTTCTCAGGGCTCCAA
GCGTGGTCACCTCCATCGCGTGAGGCAAGCACCAAGATGCTGTAACGAGC
GGGAAACGGCCGGTATAGGTGCCGCTGTATCGCGTGACTCGCCGGGTGAA
ACGGACGGTATGAGTTTCCATCTCTTAAGCTGCACAGCGGACAGGGATGT
TTTGCCGGTGTTCAGAGGGTTGTAGACTGTAGGCACTGCCATGATTAGAG
GCGCTCGCAGCATGACTCTGGTCGTGAGTGAACCTCCCCGTAAATGCTTC
TATGGGATAGGAATCGTTGTTTCGCTTAACTTGTGCCACCTAGCCCTCGT
ACGCTGCACGGGGCACCCGCTTTTGTTGGTCGGTTGATGATTTCCAGCAG
AACGTGAGGGTTTGGTCGGCCGATGTATTTAAAACAAGTTGAAGGTTTGT
TGCGGACCGTGTCGTATCGAGTAGATGGTGTTGAGGTTCGGTATGCCTGG
ACGAAAGTACACAGAAATCGAGTAAACCATTGGCGGCGTACCCCCCCCAA
GTCTTGGTTTATACCGACCAGCGACCCTCTAGTCTTCCCGATGGCTCGTG
CACACCGTCATACAGGAATTCTGATTGAGGCAAATGAGGCTCTAACTGTT
TTACTCTGACGGAGAGACTTGTTGTGGCCGAGGAAGCACATGACCGTGGT
GTTTATAGACTCAAATGCGAGGGTCGGTGCATGTGGGTGTTGTGATGAAA
GCGCTGATGCTGCAATGGCAGATGCCAGGTCTCGGTGATACACAAGAAGA
GACAATAAGGACGTCATGCGCCTTGAGGCGATTGTTTGAAAAATGTACTC
GTTTGAAAACGAATATGTCATATTTTACGTCTGTCGAGAGTACGCGTCTG
CTTAGAACAATACCTGCGCGCAAGAGAAAGTGGAGTTTGGCATGAAAAAC
AATGCTGTCACCCCCGCGTGTAGCTTCGTCTAAAGACGACGCAAGTGTCT
GTATGTCACCGCAAAGTGTTATTGTGCCATGGGGTGTGTTTGCTCGTTAT
CGGAAGGGCTCGCCAAATAATTTTTGTCATACGTTGGCTGTGAGACGGTA
CATGATGGGTTTGTTGGTGCATGCAAACGGTTGTTTTGGGGGTTCATATG
CGGG

protein sequence of EsuBft1046_5a-0001

>EsuBft1046_5 ID=EsuBft1046_5|Name=EsuBft1046_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=309bp
MSRVPGVQAFGLLLGLPTEVLLQSSAIELGSGSGHQHMKGHASAASLGSM
SWLKKLNWLVLELDTPANKTSWAASLQQLSFGDCFNQPLSEVVWLVLLQH
LSSGDSFNQPFDEVAWPTSLQQLSFGNEFDQTVADVVWPASLRLLSFAWR
FNQPVSELMWPVSLQQLSFGFEFNQPVADVAWPVSLQQLSFGCCFNQSIA
EVVWLACLQQLSFGYKLNQPITDVVWPAPLRKRTFGHNFDQPIVEIAWPA
FLQQLLFGNRLNQPIAEVVRPASLQQLSFGFTFDQPINGVAWPAFLEKLR
FSDIFRKPI

mRNA from alignment at Scaffold_421:330862..333115+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1046_5a-0001 ID=EsuBft1046_5a-0001|Name=EsuBft1046_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2254bp|location=Sequence derived from alignment at Scaffold_421:330862..333115+ (Ectocarpus subulatus male Bft15b)
ATGAGTCGCGTGCCGGGTGTGCAGGCTTTTGGTTTACTATTGGGACTTCC
GACGGAGGTTCTGCTGCAGAGTTCTGCCATCGAGCTTGGGTCTGGATCAG
GACATCAGCACATGAAAGGACATGCATCTGCAGCAAGCCTCGGATCGATG
TCTTGGCTCAAAAAGCTCAATTGGCTGGTATTGGAGTTAGATACGCCTGC
GAACAAGACCTCGTGGGCGGCCTCCCTGCAGCAGCTATCGTTCGGAGATT
GTTTCAACCAGCCTCTATCCGAGGTCGTGTGGCTGGTCCTCCTGCAGCAT
CTATCGTCTGGAGATAGTTTCAACCAGCCTTTTGACGAAGTTGCGTGGCC
GACCTCGCTGCAGCAGCTATCGTTCGGAAATGAATTCGATCAGACCGTTG
CGGATGTTGTGTGGCCGGCCTCCCTGCGGCTGCTATCGTTTGCATGGCGC
TTCAATCAGCCCGTATCCGAACTCATGTGGCCGGTCTCCCTGCAGCAGCT
ATCGTTCGGATTCGAATTCAACCAGCCCGTAGCCGATGTTGCGTGGCCGG
TCTCCCTGCAGCAGCTGTCGTTTGGATGCTGCTTCAACCAGTCCATCGCC
GAAGTCGTGTGGCTGGCCTGCCTGCAGCAATTATCCTTCGGGTACAAATT
AAACCAACCTATCACTGACGTTGTGTGGCCGGCACCCCTCCGGAAGCGGA
CTTTCGGACACAACTTTGATCAACCCATTGTTGAAATCGCGTGGCCTGCA
TTCCTGCAGCAGCTGCTCTTCGGGAACAGATTGAACCAGCCCATCGCAGA
GGTCGTGCGGCCCGCGTCCCTGCAGCAACTCTCATTCGGGTTCACATTCG
ATCAACCCATCAACGGAGTCGCGTGGCCAGCTTTCCTTGAAAAGCTGCGT
TTTTCCGACATTTTCAGGAAGCCCATTTGACGGAGTCAAGCGGCCGGCGT
CCCTGGAGGAGATCCATTTTGGAAGGTACTTCCGTCTGCCTCGCGCCGGA
TTCGTGTGGCCAAACTCCCTGGTTATCCTATCTTGTGGGGTGTGTCACCG
ACCTATCGCTCGACCAGGCCAGTCAGCCGCGGTGCAAGCTGGGTGAGTGC
AAGTGGCGGAAGCTTTCCGCACGCACGTTTGCTTCTTCTCAGGGCTCCAA
GCGTGGTCACCTCCATCGCGTGAGGCAAGCACCAAGATGCTGTAACGAGC
GGGAAACGGCCGGTATAGGTGCCGCTGTATCGCGTGACTCGCCGGGTGAA
ACGGACGGTATGAGTTTCCATCTCTTAAGCTGCACAGCGGACAGGGATGT
TTTGCCGGTGTTCAGAGGGTTGTAGACTGTAGGCACTGCCATGATTAGAG
GCGCTCGCAGCATGACTCTGGTCGTGAGTGAACCTCCCCGTAAATGCTTC
TATGGGATAGGAATCGTTGTTTCGCTTAACTTGTGCCACCTAGCCCTCGT
ACGCTGCACGGGGCACCCGCTTTTGTTGGTCGGTTGATGATTTCCAGCAG
AACGTGAGGGTTTGGTCGGCCGATGTATTTAAAACAAGTTGAAGGTTTGT
TGCGGACCGTGTCGTATCGAGTAGATGGTGTTGAGGTTCGGTATGCCTGG
ACGAAAGTACACAGAAATCGAGTAAACCATTGGCGGCGTACCCCCCCCAA
GTCTTGGTTTATACCGACCAGCGACCCTCTAGTCTTCCCGATGGCTCGTG
CACACCGTCATACAGGAATTCTGATTGAGGCAAATGAGGCTCTAACTGTT
TTACTCTGACGGAGAGACTTGTTGTGGCCGAGGAAGCACATGACCGTGGT
GTTTATAGACTCAAATGCGAGGGTCGGTGCATGTGGGTGTTGTGATGAAA
GCGCTGATGCTGCAATGGCAGATGCCAGGTCTCGGTGATACACAAGAAGA
GACAATAAGGACGTCATGCGCCTTGAGGCGATTGTTTGAAAAATGTACTC
GTTTGAAAACGAATATGTCATATTTTACGTCTGTCGAGAGTACGCGTCTG
CTTAGAACAATACCTGCGCGCAAGAGAAAGTGGAGTTTGGCATGAAAAAC
AATGCTGTCACCCCCGCGTGTAGCTTCGTCTAAAGACGACGCAAGTGTCT
GTATGTCACCGCAAAGTGTTATTGTGCCATGGGGTGTGTTTGCTCGTTAT
CGGAAGGGCTCGCCAAATAATTTTTGTCATACGTTGGCTGTGAGACGGTA
CATGATGGGTTTGTTGGTGCATGCAAACGGTTGTTTTGGGGGTTCATATG
CGGG

Coding sequence (CDS) from alignment at Scaffold_421:330862..333115+

>EsuBft1046_5a-0001 ID=EsuBft1046_5a-0001|Name=EsuBft1046_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=930bp|location=Sequence derived from alignment at Scaffold_421:330862..333115+ (Ectocarpus subulatus male Bft15b)
ATGAGTCGCGTGCCGGGTGTGCAGGCTTTTGGTTTACTATTGGGACTTCC
GACGGAGGTTCTGCTGCAGAGTTCTGCCATCGAGCTTGGGTCTGGATCAG
GACATCAGCACATGAAAGGACATGCATCTGCAGCAAGCCTCGGATCGATG
TCTTGGCTCAAAAAGCTCAATTGGCTGGTATTGGAGTTAGATACGCCTGC
GAACAAGACCTCGTGGGCGGCCTCCCTGCAGCAGCTATCGTTCGGAGATT
GTTTCAACCAGCCTCTATCCGAGGTCGTGTGGCTGGTCCTCCTGCAGCAT
CTATCGTCTGGAGATAGTTTCAACCAGCCTTTTGACGAAGTTGCGTGGCC
GACCTCGCTGCAGCAGCTATCGTTCGGAAATGAATTCGATCAGACCGTTG
CGGATGTTGTGTGGCCGGCCTCCCTGCGGCTGCTATCGTTTGCATGGCGC
TTCAATCAGCCCGTATCCGAACTCATGTGGCCGGTCTCCCTGCAGCAGCT
ATCGTTCGGATTCGAATTCAACCAGCCCGTAGCCGATGTTGCGTGGCCGG
TCTCCCTGCAGCAGCTGTCGTTTGGATGCTGCTTCAACCAGTCCATCGCC
GAAGTCGTGTGGCTGGCCTGCCTGCAGCAATTATCCTTCGGGTACAAATT
AAACCAACCTATCACTGACGTTGTGTGGCCGGCACCCCTCCGGAAGCGGA
CTTTCGGACACAACTTTGATCAACCCATTGTTGAAATCGCGTGGCCTGCA
TTCCTGCAGCAGCTGCTCTTCGGGAACAGATTGAACCAGCCCATCGCAGA
GGTCGTGCGGCCCGCGTCCCTGCAGCAACTCTCATTCGGGTTCACATTCG
ATCAACCCATCAACGGAGTCGCGTGGCCAGCTTTCCTTGAAAAGCTGCGT
TTTTCCGACATTTTCAGGAAGCCCATTTGA