EsuBft1046_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1046_4a-0001
Unique Name	EsuBft1046_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_421	contig	Scaffold_421:325499..326683 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1046_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	118
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_4a	EsuBft1046_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_421 325499..326683 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_4a-0001-exon	EsuBft1046_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_421 325499..326683 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_4a-0001-exon	agat-three_prime_utr-452	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_421 325499..326527 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_4a-0001-cds	EsuBft1046_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_421 326528..326683 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_4a-0001	EsuBft1046_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_421 326528..326683 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_421:325499..326683-
coding sequence from alignment at Scaffold_421:325499..326683-

spliced messenger RNA

>EsuBft1046_4a-0001 ID=EsuBft1046_4a-0001|Name=EsuBft1046_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1185bp|location=Sequence derived from alignment at Scaffold_421:325499..326683- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCCTGCCTGTGTTTGACGGAGATGTCTGTAGACCGGAACCGCCC
TGGCACTTTCCACGTGCGGGTGATCAGTGTCCCACATGTACCGCCCGTGA
CCCACCGAATTTCTACCCAAAGGTCGCCCGTTCTCAAGGAGGGCGCTGAT
CGGTAGCGAGACGGATCAATGCGTGCAAACCGTACCCCTTTGTTGACCTG
CTACTGCTGTATATACAATCCATAACGCCGAATGTGCGATCGCGGCTGAT
CTTCTGCACGATTTTCGTACCACCGCACACACCCACCGGCGTGTAGCTAG
GCATGAAACCTGTATGTAGATGTGTGCGCCACAGGTTGCTGCCAAGCCAG
GAAGATCTGTGTGCCCGGCCATGCCCTCGCGGCAAATTCTTCAAAGGCGA
TCAATCCTGCTGTTGGGCATCGCGCCTCCGGGTGAATGTTGATCGAATGT
TGCGTAGGTGCGCCGTGCGTTTGACAGAGCATTGTTTTTTGTTTTTCTTT
CTCCCATCATTGGACTCTGTCGTCTGCCCCTCTGTCCCCCATCCTCCACT
TCTACCAGCCAGACGACCCAACCGGGGTCACATAGGAGGGGGGGGTTGGA
CCCCCTCCTGCGGTTCCTGCCTGAGATATTTTTATCGCGGGAGGGGTGCA
GCAATCCCTTCCCTCGCGACTTATGATGTCTGCCAAGTTTATTAACAACG
AGCTTTGCAGCGCGTCGCTTCCAACGGAGCCCAGGATTCAACTAGGGTGA
TAGCAGTTGTTGTGTTGCTTACGAATATCCCGACGTGACCCAAGATGAAT
CTTTATCTTTGGTAATGAATCGGTTTTTTAGTGTGGCCGTGTGGCGGTGT
TCCTCGTTTCTGTACACGTAGGGCGGGTGGGCGACCAATAGAGCCAGCTG
ATGTTTCTTGTGAATTGCAGATGTCCTTTCGAGGGCATTTCGATCCTAGC
GAAACAAGCGGGGGTCAGCGCACGAACAGGGCTACATATGTACAAGGGTG
CTTCGCCCGCCCCCCTATCGGGAGGCCAGTCTCGCGTAATACCCGTAGGG
GAACAAAAGGAAAAGTGTTTGAAGTTGGAAGGTGGGAAGGACGTGGGCAA
GTTTACAGAAAACCGGTTGGGTTCGTCGCACCCATGATACGCATATTCTC
TCCGGCATGCTGTGCGACGGAAATATGCAACGCCC

protein sequence of EsuBft1046_4a-0001

>EsuBft1046_4 ID=EsuBft1046_4|Name=EsuBft1046_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=51bp
MSACLCLTEMSVDRNRPGTFHVRVISVPHVPPVTHRISTQRSPVLKEGAD
R

mRNA from alignment at Scaffold_421:325499..326683-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1046_4a-0001 ID=EsuBft1046_4a-0001|Name=EsuBft1046_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1185bp|location=Sequence derived from alignment at Scaffold_421:325499..326683- (Ectocarpus subulatus male Bft15b)
ATGTCGGCCTGCCTGTGTTTGACGGAGATGTCTGTAGACCGGAACCGCCC
TGGCACTTTCCACGTGCGGGTGATCAGTGTCCCACATGTACCGCCCGTGA
CCCACCGAATTTCTACCCAAAGGTCGCCCGTTCTCAAGGAGGGCGCTGAT
CGGTAGCGAGACGGATCAATGCGTGCAAACCGTACCCCTTTGTTGACCTG
CTACTGCTGTATATACAATCCATAACGCCGAATGTGCGATCGCGGCTGAT
CTTCTGCACGATTTTCGTACCACCGCACACACCCACCGGCGTGTAGCTAG
GCATGAAACCTGTATGTAGATGTGTGCGCCACAGGTTGCTGCCAAGCCAG
GAAGATCTGTGTGCCCGGCCATGCCCTCGCGGCAAATTCTTCAAAGGCGA
TCAATCCTGCTGTTGGGCATCGCGCCTCCGGGTGAATGTTGATCGAATGT
TGCGTAGGTGCGCCGTGCGTTTGACAGAGCATTGTTTTTTGTTTTTCTTT
CTCCCATCATTGGACTCTGTCGTCTGCCCCTCTGTCCCCCATCCTCCACT
TCTACCAGCCAGACGACCCAACCGGGGTCACATAGGAGGGGGGGGTTGGA
CCCCCTCCTGCGGTTCCTGCCTGAGATATTTTTATCGCGGGAGGGGTGCA
GCAATCCCTTCCCTCGCGACTTATGATGTCTGCCAAGTTTATTAACAACG
AGCTTTGCAGCGCGTCGCTTCCAACGGAGCCCAGGATTCAACTAGGGTGA
TAGCAGTTGTTGTGTTGCTTACGAATATCCCGACGTGACCCAAGATGAAT
CTTTATCTTTGGTAATGAATCGGTTTTTTAGTGTGGCCGTGTGGCGGTGT
TCCTCGTTTCTGTACACGTAGGGCGGGTGGGCGACCAATAGAGCCAGCTG
ATGTTTCTTGTGAATTGCAGATGTCCTTTCGAGGGCATTTCGATCCTAGC
GAAACAAGCGGGGGTCAGCGCACGAACAGGGCTACATATGTACAAGGGTG
CTTCGCCCGCCCCCCTATCGGGAGGCCAGTCTCGCGTAATACCCGTAGGG
GAACAAAAGGAAAAGTGTTTGAAGTTGGAAGGTGGGAAGGACGTGGGCAA
GTTTACAGAAAACCGGTTGGGTTCGTCGCACCCATGATACGCATATTCTC
TCCGGCATGCTGTGCGACGGAAATATGCAACGCCC

Coding sequence (CDS) from alignment at Scaffold_421:325499..326683-

>EsuBft1046_4a-0001 ID=EsuBft1046_4a-0001|Name=EsuBft1046_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=156bp|location=Sequence derived from alignment at Scaffold_421:325499..326683- (Ectocarpus subulatus male Bft15b)
ATGTCGGCCTGCCTGTGTTTGACGGAGATGTCTGTAGACCGGAACCGCCC
TGGCACTTTCCACGTGCGGGTGATCAGTGTCCCACATGTACCGCCCGTGA
CCCACCGAATTTCTACCCAAAGGTCGCCCGTTCTCAAGGAGGGCGCTGAT
CGGTAG