EsuBft1046_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1046_3a-0001
Unique Name	EsuBft1046_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_421	contig	Scaffold_421:320390..322348 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FWF2
ProteomeId	EsuBft1046_3
Protein domains	IPR026350
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	195
Hectar predicted targeting category	other localisation
Evalue	7.26e-155
EggNOG OGs	2ET7H@1\|root,2SVKZ@2759\|Eukaryota
Ec32 ortholog description	GxxExxY protein
Ec32 ortholog	Ec-07_007280.1
Date last modified	2016-06-15
Date creation	2016-06-15
Description	PD-(D/E)XK nuclease superfamily
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_3a	EsuBft1046_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_421 320390..322348 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_3a-0001-exon	EsuBft1046_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_421 320390..322348 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_3a-0001-exon	agat-three_prime_utr-451	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_421 320390..321544 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_3a-0001-cds	EsuBft1046_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_421 321545..322348 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1046_3a-0001	EsuBft1046_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_421 321545..322348 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_421:320390..322348-
coding sequence from alignment at Scaffold_421:320390..322348-

spliced messenger RNA

>EsuBft1046_3a-0001 ID=EsuBft1046_3a-0001|Name=EsuBft1046_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1959bp|location=Sequence derived from alignment at Scaffold_421:320390..322348- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTACAGGGGCACGAGGGGCGCCGCCGCAGCAGCAACAGCTGCAGT
GCTTGAAAAGGACGAACATCGCCACGCGCAGTCCGCGGGCGATCTTGTTG
GGTTGTCGAGGGACAGGGTTACAGCTAACCTTGAGCCGAAAACGTCGACC
GCCGCCCAGAATTTCCCAACGAAGGCGACCGCGCCACGAAGAGAAGCGTA
CCGGCAGGAAGAAGCAACATGCGACGAGCTGACAAAAAGGGTCATGGCCT
TACAAGTCGTCGACGACCGCAGCAGTACTCCTGGGAGGAAGATAGAGACC
ATTGCCGAGCTGAAGCAGCAGCTGGAAGGCATGTGCCGGACTGTGTTCGC
GACCCTCGGGCGGCAGCAGACGGAGAGCGCCTACCAGATGGCCCTCAAGA
TCGAGCTCGAGGACCGAGGGGTTGCCGTCCAGCAGGAAGTCAAGATATCC
ATCACCTACAGAGATATCGACATCTCTTCCAGGCGGGTTGACCTGCTGCT
GACCCTCCGCGACGGCTGCACGGCGATCGTCGAGATGAAGGCCGTCTCGA
CACTCACCAAGGGCAACAACCTCAACGCTGTCCACCAGCTCCAGTATTAC
CTCGACGTTTTCGACGTCAACCACGGGTTTCTGGTGAATTTCCCGCACGA
TGCAGGCTTCCCTCCACCACCGAACGGAGGAATTTTCCGGCAGGAACCGA
TCTGCGGAGTGGTGGGCCCGCTGTCCGATGTTCGCGTGCGAGAACGCAAG
GCTAGCAACGTCGGCAACGGGCCGGAGATTGTGTACTTCCGGCGGGTGTT
GTAACATTCTTCTGCGCTCTTGACTCCGCTCTTCGTGGTGGTATTTAGCC
CGTGGTGTTGGTGATCGTGGTAGAAATGCGTTAGGGTGCGGCGCCGAAGG
CCGAAACTTGCGGGAATAGATGGGGAGAGGCAGGTTTTTCGCGGTGTGTT
AGTCTGTGTTTGGGGATCCTTTACAGGCGGGCCGAATAACGAATGGAGTG
GTTTGTGCCTCCGCAGAGACGACGGGGCATGCTCTTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGTGCATGTGATATGTTGTGATGATGTCGACGTGG
TTTTGACATTGCAACTTGTGCGGAGTGAAAATCTCTCACTGCTGTTGCTA
ACGATTTTTGTTCGAAGCATTTGCTCAGGTTACCGATGTAGTATCTGCTG
ATGAGGTTTGCGCACCAGAAACCTAGTCCACGAGGTAAACTGAGGCGCAT
TTGCGAAGAGAAGGCGCTTTTTTAATGAAGCCGGCGTCCAGTAACGTGCT
AGATCATCATAGCGTAGGTACCGGACGCCGGCTTGAGTATAAAAGGGCCT
TGCCCTCGTGAATGTACGACCACTTGATTTTACCTGGTGGACCGGAAGGA
CCCAAGTGCAAACGATGGCATTCATCAGTGCGGCAGCAGCGCATCTATTT
TTCAGGACACCGTGCAGACTGGTGTCAACGTAAATTTGTGCCTCGCAGCA
TTACAAACGTTTTCGGAGGGTCTGCTCGTAGATGCTCGTCCACACCGTTG
TACTTTGTAGATGTTTCCCTCTGTAGTTTATTCATTGCCGTTAGTGCTAG
GGGCCTTCCAACAACGCAAGTGTAGGCGTTATTTTCAAGTGTCGACAGAG
AGAGCATAGATGCAGGGGCAATAGAGGAAACGTGCAACGTATACCTTTCC
ACCGTAGCATGAGTACGTGGCACACGGAGGCACAAAAGCTTTTACTTACG
TTCTTTTTTGCCGATTTCTTTGGGCCATGTTGCTCGGTTAGCCTTTGGCA
GTTTGAAACCTATTGCTGATTATCTGGCTTTATTGGTGATGACGTGGCAA
TTGGCTGGTCTCTAAAGTACGGCCGTACGTATCTGATTCTTGTTTGTTGA
TCTGACTAGACTAATTGTTGCTTACCTTGTTCTTGCGCTGGGAGTGGTGC
AGTTTATTC

protein sequence of EsuBft1046_3a-0001

>EsuBft1046_3 ID=EsuBft1046_3|Name=EsuBft1046_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=267bp
MAYRGTRGAAAAATAAVLEKDEHRHAQSAGDLVGLSRDRVTANLEPKTST
AAQNFPTKATAPRREAYRQEEATCDELTKRVMALQVVDDRSSTPGRKIET
IAELKQQLEGMCRTVFATLGRQQTESAYQMALKIELEDRGVAVQQEVKIS
ITYRDIDISSRRVDLLLTLRDGCTAIVEMKAVSTLTKGNNLNAVHQLQYY
LDVFDVNHGFLVNFPHDAGFPPPPNGGIFRQEPICGVVGPLSDVRVRERK
ASNVGNGPEIVYFRRVL

mRNA from alignment at Scaffold_421:320390..322348-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1046_3a-0001 ID=EsuBft1046_3a-0001|Name=EsuBft1046_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1959bp|location=Sequence derived from alignment at Scaffold_421:320390..322348- (Ectocarpus subulatus male Bft15b)
ATGGCGTACAGGGGCACGAGGGGCGCCGCCGCAGCAGCAACAGCTGCAGT
GCTTGAAAAGGACGAACATCGCCACGCGCAGTCCGCGGGCGATCTTGTTG
GGTTGTCGAGGGACAGGGTTACAGCTAACCTTGAGCCGAAAACGTCGACC
GCCGCCCAGAATTTCCCAACGAAGGCGACCGCGCCACGAAGAGAAGCGTA
CCGGCAGGAAGAAGCAACATGCGACGAGCTGACAAAAAGGGTCATGGCCT
TACAAGTCGTCGACGACCGCAGCAGTACTCCTGGGAGGAAGATAGAGACC
ATTGCCGAGCTGAAGCAGCAGCTGGAAGGCATGTGCCGGACTGTGTTCGC
GACCCTCGGGCGGCAGCAGACGGAGAGCGCCTACCAGATGGCCCTCAAGA
TCGAGCTCGAGGACCGAGGGGTTGCCGTCCAGCAGGAAGTCAAGATATCC
ATCACCTACAGAGATATCGACATCTCTTCCAGGCGGGTTGACCTGCTGCT
GACCCTCCGCGACGGCTGCACGGCGATCGTCGAGATGAAGGCCGTCTCGA
CACTCACCAAGGGCAACAACCTCAACGCTGTCCACCAGCTCCAGTATTAC
CTCGACGTTTTCGACGTCAACCACGGGTTTCTGGTGAATTTCCCGCACGA
TGCAGGCTTCCCTCCACCACCGAACGGAGGAATTTTCCGGCAGGAACCGA
TCTGCGGAGTGGTGGGCCCGCTGTCCGATGTTCGCGTGCGAGAACGCAAG
GCTAGCAACGTCGGCAACGGGCCGGAGATTGTGTACTTCCGGCGGGTGTT
GTAACATTCTTCTGCGCTCTTGACTCCGCTCTTCGTGGTGGTATTTAGCC
CGTGGTGTTGGTGATCGTGGTAGAAATGCGTTAGGGTGCGGCGCCGAAGG
CCGAAACTTGCGGGAATAGATGGGGAGAGGCAGGTTTTTCGCGGTGTGTT
AGTCTGTGTTTGGGGATCCTTTACAGGCGGGCCGAATAACGAATGGAGTG
GTTTGTGCCTCCGCAGAGACGACGGGGCATGCTCTTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGTGCATGTGATATGTTGTGATGATGTCGACGTGG
TTTTGACATTGCAACTTGTGCGGAGTGAAAATCTCTCACTGCTGTTGCTA
ACGATTTTTGTTCGAAGCATTTGCTCAGGTTACCGATGTAGTATCTGCTG
ATGAGGTTTGCGCACCAGAAACCTAGTCCACGAGGTAAACTGAGGCGCAT
TTGCGAAGAGAAGGCGCTTTTTTAATGAAGCCGGCGTCCAGTAACGTGCT
AGATCATCATAGCGTAGGTACCGGACGCCGGCTTGAGTATAAAAGGGCCT
TGCCCTCGTGAATGTACGACCACTTGATTTTACCTGGTGGACCGGAAGGA
CCCAAGTGCAAACGATGGCATTCATCAGTGCGGCAGCAGCGCATCTATTT
TTCAGGACACCGTGCAGACTGGTGTCAACGTAAATTTGTGCCTCGCAGCA
TTACAAACGTTTTCGGAGGGTCTGCTCGTAGATGCTCGTCCACACCGTTG
TACTTTGTAGATGTTTCCCTCTGTAGTTTATTCATTGCCGTTAGTGCTAG
GGGCCTTCCAACAACGCAAGTGTAGGCGTTATTTTCAAGTGTCGACAGAG
AGAGCATAGATGCAGGGGCAATAGAGGAAACGTGCAACGTATACCTTTCC
ACCGTAGCATGAGTACGTGGCACACGGAGGCACAAAAGCTTTTACTTACG
TTCTTTTTTGCCGATTTCTTTGGGCCATGTTGCTCGGTTAGCCTTTGGCA
GTTTGAAACCTATTGCTGATTATCTGGCTTTATTGGTGATGACGTGGCAA
TTGGCTGGTCTCTAAAGTACGGCCGTACGTATCTGATTCTTGTTTGTTGA
TCTGACTAGACTAATTGTTGCTTACCTTGTTCTTGCGCTGGGAGTGGTGC
AGTTTATTC

Coding sequence (CDS) from alignment at Scaffold_421:320390..322348-

>EsuBft1046_3a-0001 ID=EsuBft1046_3a-0001|Name=EsuBft1046_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=804bp|location=Sequence derived from alignment at Scaffold_421:320390..322348- (Ectocarpus subulatus male Bft15b)
ATGGCGTACAGGGGCACGAGGGGCGCCGCCGCAGCAGCAACAGCTGCAGT
GCTTGAAAAGGACGAACATCGCCACGCGCAGTCCGCGGGCGATCTTGTTG
GGTTGTCGAGGGACAGGGTTACAGCTAACCTTGAGCCGAAAACGTCGACC
GCCGCCCAGAATTTCCCAACGAAGGCGACCGCGCCACGAAGAGAAGCGTA
CCGGCAGGAAGAAGCAACATGCGACGAGCTGACAAAAAGGGTCATGGCCT
TACAAGTCGTCGACGACCGCAGCAGTACTCCTGGGAGGAAGATAGAGACC
ATTGCCGAGCTGAAGCAGCAGCTGGAAGGCATGTGCCGGACTGTGTTCGC
GACCCTCGGGCGGCAGCAGACGGAGAGCGCCTACCAGATGGCCCTCAAGA
TCGAGCTCGAGGACCGAGGGGTTGCCGTCCAGCAGGAAGTCAAGATATCC
ATCACCTACAGAGATATCGACATCTCTTCCAGGCGGGTTGACCTGCTGCT
GACCCTCCGCGACGGCTGCACGGCGATCGTCGAGATGAAGGCCGTCTCGA
CACTCACCAAGGGCAACAACCTCAACGCTGTCCACCAGCTCCAGTATTAC
CTCGACGTTTTCGACGTCAACCACGGGTTTCTGGTGAATTTCCCGCACGA
TGCAGGCTTCCCTCCACCACCGAACGGAGGAATTTTCCGGCAGGAACCGA
TCTGCGGAGTGGTGGGCCCGCTGTCCGATGTTCGCGTGCGAGAACGCAAG
GCTAGCAACGTCGGCAACGGGCCGGAGATTGTGTACTTCCGGCGGGTGTT
GTAA